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[+] Show/hide bicluster #141 rows and columns.
bicluster 141
Methanococcus maripaludis S2
11x58
[+] Show/hide bicluster #141 rows (genes).
bicluster 141 genes
Methanococcus maripaludis S2
11
[+] Show/hide bicluster #141 rows (short gene names).
bicluster 141 short names
Methanococcus maripaludis S2
11
short_name
[+] Show/hide bicluster #141 rows (long gene names).
bicluster 141 long names
Methanococcus maripaludis S2
11
long_name
[+] Show/hide bicluster #141 rows (NCBI RefSeq gene IDs).
bicluster 141 NCBI RefSeq IDs
Methanococcus maripaludis S2
22
[+] Show/hide bicluster #141 gene upstream sequences.
bicluster 141 upstream sequences
Methanococcus maripaludis S2
11
upstream
[+] Show/hide bicluster #141 columns (arrays; conditions).
bicluster 141 arrays
Methanococcus maripaludis S2
58
[+] Show/hide bicluster #141 ratios.
bicluster 141 ratios
Methanococcus maripaludis S2
11x58
GENES H_vs_Leu_3000070032B.4 H_vs_Leu_3000070033B.4 H_vs_Leu_3000070260A.1 H_vs_Leu_3000070260B.1 H_vs_Leu_3000070261A.1 H_vs_Leu_3000070261B.1 H_vs_PO4_3000070035A.4 H_vs_PO4_3000070035B.4 H_vs_PO4_3000070247B.3 H_vs_PO4_3000070248B.3 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070253A.1 H_vs_PO4_3000070253B.1 H_vs_PO4_3000070254A.1 H_vs_PO4_3000070254B.1 S2_vs_S40_BR2_3000070262A S2_vs_S40_BR2_3000070263A S2_vs_S40_BR2_3000070263B S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272A S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR3_3000070252A leu_vs_PO4_BR3_3000070252B leu_vs_PO4_BR4_3000070256A leu_vs_PO4_BR4_3000070256B leu_vs_PO4_BR4_3000070257A mma_0070m_0.2 mma_0492m_0.598 mma_0649m_0.885 mma_0783m_1.23 mma_0849m_1.4 mma_0912m_1.56 mma_1444m_1.58 rapid_H_vs_slow_H_3000070037B.3 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069787Blow.2 rapid_PO4_vs_slow_PO4_3000069789B.3 rapid_PO4_vs_slow_PO4_3000069789Blow.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024B.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0228 1.17083992518157 -0.473808990560803 -0.561522485520112 -0.189905610592425 -1.38971455767397 -1.63467185558148 0.240042214071688 0.421015400203906 0.814270993617357 -1.14872428268526 -2.00366341841896 -0.93737401373935 -0.382414946638621 0.204812702241628 -0.264715979944655 0.00355984136842652 0.0300339700355336 -0.0300339700355336 -0.207346536597662 -0.61124045874898 0.93705170916643 -0.155387986978135 -0.834258419453685 1.40492168546494 1.49114066995482 -0.916896060115128 -1.47189982223475 0.546517962096093 -1.75637154787465 0.671292590145222 0.550649207573622 -0.503182606643148 -0.305022783600832 0.651337945141785 1.53340681922712 -0.295878363144564 -0.693937974956494 -0.107341917791981 -0.875249483534616 1.85336830495321 0.678800012190958 -0.461224259795715 0.317985956681226 0.205787090033416 -0.170749868318525 0.850714354783546 -0.539717233980955 2.06597374901181 3.05159066941448 0.72568837671788 1.23898904054851 0.132500003082852 0.5688331521563 -0.727003224933906 1.06323576548705 0.647727270903093 -0.648419800034888 1.34145271845334
MMP0641 1.43478752497295 -1.06654622103304 0.967747311431624 0.706827042868618 -0.72316663135676 -0.756569329623647 -0.147864795527625 0.109635591261290 0.248821399337607 -0.623685214923311 -0.00396605845726673 -0.211192797714188 0.518714470006738 0.666268019734654 -0.0423045601002754 0.0128967834869413 -0.494415922952777 -0.548787514590771 -0.0732037525181659 -1.43565905240422 0.569038200733144 1.55675671818777 -1.08851274708652 1.39429416120671 1.42202131371486 -1.35790250570931 -1.24407940504333 1.32068931088186 -0.49387232639413 0.339276302822227 0.408496372708604 -0.450027431554878 -0.339276302822227 0.779811153006726 0.282903747390631 -0.0559860321113488 0.0559860321113488 0.117473199865389 0.169676168726959 -1.76024776617308 -2.34815892308623 1.269849927328 0.975170790745527 -0.935529341393992 -0.783525470215813 -1.07808570698439 -0.988340590086023 -0.596152372491395 -0.48215126592009 0.155516159402137 0.307800425634739 0.346584496239187 -0.806895950924935 -2.7213461782055 -1.16706766338143 1.39360105027621 0.073631790696736 1.13285049928358
MMP1032 1.06436206102177 -0.717510522371458 0.251907440369065 0.42555546995179 -0.971681289238952 -0.84641498624464 -1.16009663776039 -0.729966735576071 0.174824166660952 -0.910007767700314 0.101895249166806 0.186157612575441 0.331671980609362 0.466292017651091 -0.680976214534466 -0.213417035826691 0.23938385913208 -0.303854796620301 -0.23938385913208 -0.744705482040883 1.11273909705956 -0.573593524831671 0.141080856757737 1.93256526775192 1.95310666591239 -1.56751830214611 -1.24754100633234 0.809192333101944 -0.244931558363875 -0.135950117569638 0.135950117569638 -0.290304824382692 -0.158901426544118 -0.272930222804047 0.297203765745063 0.228755780968805 0.137898710730766 -0.0527965029070371 -0.106857331647521 -1.69999507667555 -2.33320433201974 1.53710746753359 -0.341625675798479 0.0963123427308894 0.296490681922529 0.352292488609595 0.349420692828847 -0.517884645508428 -0.413107642575817 0.240682374801239 0.434792103703375 1.05124769898865 -0.139550358352594 -2.47018063440800 -0.0783214468256696 0.91958826219118 -0.84066519555404 0.71986696706809
MMP1113 1.52625918816796 -1.07079999247647 0.363452523679768 0.594642199377143 -1.03858300528236 -0.621216507919525 0.527113815121626 0.566063351666205 0.00754092061180413 0.315784467875365 -0.788805754792653 -0.809033162466108 0.243858376985773 0.220435971408742 0.410956330003498 0.560045267648419 -0.62340404617853 0.290304106396491 0.159232557963047 -0.37740535208059 1.51833081709682 0.229209509489581 -0.845174988032918 1.42087306375674 1.54768028528463 -1.21265206942269 -1.00514874592612 0.749776393936105 -1.02626613801856 0.941941693437813 0.839726060542827 -0.60992301082488 -0.497138488042162 0.497138488042162 1.15561760108520 -0.150083061711578 0.116828932859916 0.393702516690938 0.362059821395964 -0.994913727295444 -2.13873856462488 1.41805507121586 0.357029261829846 -0.266204006354643 -0.125583707327811 -0.00754092061180408 -0.779470375209998 -0.127070628797468 -0.498859285639634 -0.805766600827472 0.859063605013441 1.09637069083874 -0.839836840548718 -2.48022845311419 -0.120468622976807 1.77101872812395 -0.61940458427622 1.50196956639718
MMP1314 1.20863347442937 -0.207589061157599 -0.744355421040811 -0.388931522725161 0.929056291318281 0.699069457307168 -0.0635553433717105 -0.0806408125844099 0.661866821410955 0.89741977444942 -0.535737570096468 0.210590569214093 0.984262191394052 1.11700610518082 -1.03035488540879 -1.01774884868536 0.0551556750869499 -0.180735479250044 -0.243884924640621 -0.505415491949636 1.14978190308478 -0.0787426670864275 -0.72633869625313 0.773936464144215 0.762794590248464 -0.71559207354488 -1.08168910180219 0.53685682917748 -0.875450875064409 0.56819608572273 0.895826074628948 1.25725062292442 1.26005024762915 -1.83338401734625 0.285820502608409 0.08359772153336 0.0102806954080820 -0.0102806954080820 -0.0902941243878935 -2.7668377602131 -0.591107791720222 -0.238690901803650 -0.285012594109033 0.277873908122013 0.926103148836276 1.02480467741624 NA 1.09340540735122 3.97169288721885 -1.35206242948369 -0.415844977428039 0.716217530025203 0.726123599828793 -1.05828474525195 1.33233526517194 0.216936862133959 -0.711801469565945 0.755470464734812
MMP1325 1.29017247369027 -1.17274274145277 0.894362003443994 0.779308909126375 -0.784427094008551 -0.702003347518416 -0.264051254401978 -0.18433948398827 0.0929005001495787 -0.285057118290772 0.0454810277862815 0.0265162016349517 0.766700680244379 0.798991156792458 -0.284626068850472 -0.275653794233526 0.648061640420814 -0.672751761846912 -0.648061640420814 -1.14366107549478 1.20432234392427 -0.753713330601177 -0.630158927285836 0.675462525354918 0.659335204033385 -0.889507639977686 -0.834666230978924 0.722537454345827 -1.68099560063075 1.57286362429960 1.62198451229358 -0.0269784032909800 -0.121242398508724 0.0776977275096968 0.657500794240173 -0.132146914073682 0.132146914073682 0.163474120315977 0.165225749052106 -1.31382260760026 -2.41202645481672 0.584070209724527 0.310738330684083 -0.0797764385009671 -0.0184841233393328 -0.0426347645144977 0.0125632708446148 0.233481503772486 0.273831408621606 -0.0573037211092746 0.0265698049407936 0.0317506805659057 -0.180531860524395 -0.917568532701753 -0.302696766629804 0.578272137475114 -0.0125632708446148 0.561684483860932
MMP1366 1.67836483069942 -1.19686197182425 1.28282343858375 0.86250161038021 -0.671318668332648 -0.879235842149072 -0.353720485221794 -0.208099730266343 0.104108459214273 -0.08692525489791 -0.0574689541841316 0.040861805616801 -0.0176038336997823 0.191439977770912 0.141082713319580 0.0798846064091628 -0.371194330943968 0.0966914833893367 0.0698138974376204 -0.0698138974376205 1.95147013849198 0.573079090434146 -1.02801581856687 1.21045578101645 1.32657097124598 -1.31650271077247 -1.41138939696442 1.16832255927283 -0.444083670987098 0.47319196102941 0.444083670987098 -0.81391145503502 -0.752498013873174 0.800280199076703 0.253016420139636 -0.0600786153441489 0.0600786153441489 0.111084403000412 0.125666911502396 -1.22050977267515 -2.65249891072976 1.08175981129065 1.03775934259986 -0.852228760306454 -0.792016927992613 -0.587970584476358 -0.633694930152673 -0.277329143645611 -0.0971173931787146 0.398569326531746 0.864492334983812 0.901805376744418 -0.650561468267095 -1.73175087514745 -0.439820151616393 1.20697267827983 0.61508606360219 1.50396749048290
MMP1368 1.82514002372002 -1.10038816396743 0.68553762725921 0.745614119270988 -0.521584950734647 -0.413892175802275 -0.0770015083759059 0.0580175783887483 0.0472830129693790 -0.307918237820582 -0.15522258621705 0.0827940450148811 0.314465464367499 0.196885731176989 -0.228560818997556 -0.052048089039464 -0.208720757138332 -0.216915816073497 -0.307394273166992 -0.619113453409957 0.723790305005892 -0.00607165426603826 -1.33771308978552 1.19480471095534 1.51655135594641 -1.30541852782929 -1.17726817713007 0.661908999976353 -0.82425320293526 0.531584800486752 1.06150846269786 -0.188562915867294 -0.19693308124459 0.860354507066314 0.251749485847892 -0.0734983092589687 0.0734983092589687 0.130965325029614 0.174404958997975 -1.10880958550492 -2.66908108118102 1.41599656242727 1.14471422877517 -0.825644204893128 -0.752810252667651 -0.876169495636564 -0.958049302217297 -0.637620777164658 -0.737790792719296 0.64972593140635 0.683865031933854 0.711686861197492 -0.807019361233136 -2.17340652429087 -0.917620670993282 1.84457973785753 0.520157660145182 1.69667815743033
MMP1408 1.37190902803678 -0.932678592982872 1.30546406730468 1.44638537309103 -1.35514852271651 -1.42742894586898 -0.203223683174417 -0.00341270290683192 0.141037559673449 -0.315106005412933 -0.0492258523178488 -0.00735228643465342 0.876611484473043 0.889951669874432 0.396076458482812 0.455171248534628 -0.0234026101900937 0.0234026101900937 -0.182896544015304 -0.639022785919026 0.881648798769573 0.211429978943482 -0.703638418709049 1.15563772296957 1.18877806743050 -1.39668325652312 -1.24542082340649 1.23224598753668 -0.252686342630696 0.252686342630696 0.300444111506925 -0.81697630222147 -0.861611721844145 1.17002387228098 0.238324698973056 -0.0465960219764934 0.0465960219764934 0.112219457645747 0.0907734482569293 -1.79877558085880 -2.37321742855740 0.834045117192442 1.05475316778102 -0.685899268827116 -0.799016287828265 -0.58157648064603 -0.970419837227045 -0.558434372696841 -0.487201237585486 0.621679998720025 0.821251529820402 1.00249454603568 -0.792641279893111 -2.04464198409726 -0.914385063607511 1.54717852293266 0.795195663626953 1.57784543871317
MMP1414 1.72436052528080 -1.40043110936373 1.31680932894745 1.17454184985478 -1.15041699848461 -1.03240865072313 -0.413249685323016 -0.429219875880225 0.0718531314769875 0.169762645859193 -0.0449469288758081 -0.052976831588404 0.45225097036994 0.468608093084859 0.387894434251542 0.343234431026656 0.308175389983804 -0.177892066123693 -0.154520205583268 -0.680377803725427 1.14094028514062 -0.359651926121606 -0.851631948628084 1.14817385402706 1.04110188254709 -1.56039968936505 -1.48471566518013 1.24665292549445 -0.390609753858924 0.276468505719743 0.361521271764165 -0.95085126062211 -0.953890577307467 0.845402976512002 0.341076219393866 -0.084992626099228 0.084992626099228 0.168781251423994 0.135904658847884 -0.845626258226346 -2.70401373932979 0.659700699461828 1.02006838823162 -0.906785700209733 -0.79915633039951 -1.24223244263358 -1.28641408885516 -0.419134670179775 -0.505166483722852 0.203618392322103 0.155514843775007 0.142810988547263 -0.857842710120548 -2.62374511094555 -1.33805301061971 1.34275658803320 0.0449469288758081 1.05173679174277
MMP1416 1.64483555086515 -1.42323927421471 1.53600185547921 1.45697770204035 -1.38630687885691 -1.28476565397152 -0.371681836386935 -0.37322593765015 0.0219426940396746 -0.268879711041182 0.0881836873638703 0.156281898409876 0.175136235597422 0.323189019328942 -0.194296713445240 -0.0219426940396746 0.233351880357140 0.00211219714820805 -0.00211219714820805 -0.258174225880359 1.94683838278516 -0.0806557538102726 -0.95676602195922 1.06895640546434 1.06911736754542 -1.44867887334166 -1.41269882279918 1.15616697307088 -0.25595424872038 0.251043863570567 0.328118875310588 -1.02169508686283 -0.943001186874846 0.99246524732088 0.441511105609782 -0.0847598805420667 0.0847598805420667 0.153318358431924 0.172174228185343 -0.470161043633181 -2.70677840977292 0.597130350947782 1.04876291571868 -0.577615510849701 -0.527351043094481 -0.551591497973381 -0.524609810409813 -0.262376332050994 -0.166942858736643 0.368773221912874 0.480004301257837 0.439485798847904 -0.514040880793772 -1.83990133431071 -0.727457191002078 1.23577319120641 0.438572305600785 1.06934715954047
[+] Show/hide bicluster #141 motif PSSM #1. bicluster 141 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 1 0
2 0 0.166667 0.833333 0
3 1 0 0 0
4 0 0 0.666667 0.333333
5 0 0 1 0
6 0 0 0 1 [+] Show/hide bicluster #141 motif PSSM #2. bicluster 141 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0.888889 0 0 0.111111
2 1 0 0 0
3 0.666667 0 0 0.333333
4 0.333333 0.111111 0.111111 0.444444
5 0.333333 0.444444 0.222222 0
6 1 0 0 0
7 0 0.222222 0.777778 0
8 0.444444 0.444444 0 0.111111
9 0.333333 0 0.111111 0.555556
10 0.111111 0 0.666667 0.222222
11 0.666667 0.111111 0 0.222222
12 1 0 0 0
13 0.777778 0 0 0.222222
14 0.444444 0.555556 0 0
15 0.555556 0.111111 0 0.333333
16 0.444444 0.333333 0 0.222222
17 0 0.555556 0.111111 0.333333
18 0 0.444444 0.333333 0.222222
19 0.666667 0 0 0.333333
20 0.555556 0 0 0.444444
21 0.888889 0.111111 0 0 |