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[+] Show/hide bicluster #120 rows and columns.
bicluster 120
Methanococcus maripaludis S2
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[+] Show/hide bicluster #120 rows (genes).
bicluster 120 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #120 rows (short gene names).
bicluster 120 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #120 rows (long gene names).
bicluster 120 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #120 rows (NCBI RefSeq gene IDs).
bicluster 120 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #120 gene upstream sequences.
bicluster 120 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #120 columns (arrays; conditions).
bicluster 120 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #120 ratios.
bicluster 120 ratios
Methanococcus maripaludis S2
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GENES H_vs_Leu_3000070239A.3 H_vs_Leu_3000070239B.3 H_vs_Leu_3000070240A.3 H_vs_Leu_3000070258A.2 H_vs_Leu_3000070258B.2 H_vs_Leu_3000070259A.2 H_vs_Leu_3000070259B.2 H_vs_PO4_3000070034B.4 H_vs_PO4_3000070035A.4 H_vs_PO4_3000070247A.3 H_vs_PO4_3000070247B.3 H_vs_PO4_3000070248A.3 H_vs_PO4_3000070248B.3 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070250A.2 H_vs_PO4_3000070250B.2 H_vs_PO4_3000070254B.1 S2_vs_S40_BR1_3000069792B S2_vs_S40_BR2_3000070262A S2_vs_S40_BR2_3000070262B S2_vs_S40_BR2_3000070263A S2_vs_S40_BR2_3000070263B S2_vs_S40_BR3_3000070265A S2_vs_S40_BR3_3000070265B S2_vs_S40_BR3_3000070266A S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272B leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR3_3000070251B leu_vs_PO4_BR3_3000070252A mma_0070m_0.2 mma_0334m_0.402 mma_0492m_0.598 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070036B.3 rapid_H_vs_slow_H_3000070037A.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070038B.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_H_vs_slow_H_3000070041A.1 rapid_H_vs_slow_H_3000070041B.1 rapid_PO4_vs_slow_PO4_3000069786A.2 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069789A.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023A.1 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0002 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.0388880033023453 0.059303171879772 -0.0388880033023453 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0091 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.505466324348884 -0.00622785681015942 -0.107725090770325 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0133 0.737371573421536 0.354756484832275 -0.723290650231205 -0.883680830584373 -1.13203081850471 1.09808828054088 0.819851675311632 0.65635909526959 -0.193797778924710 -0.0224468520435101 0.181787549229521 -0.389248530486543 -0.0969737550037332 -0.469801377311043 -0.392612529972721 0.78378073940154 0.775716894399262 0.214393888361215 -1.15496757856170 -1.13947769913626 -1.13487298816890 1.10878649079945 0.65571210947488 -0.650270871209405 -0.00118897004603029 1.12884053814342 1.00419919631727 -0.571427039415211 -0.890962848591345 -0.865266218877095 -0.466927049577991 -0.650424552719632 0.0633496241309257 0.124825253816568 0.687791980627536 0.263888351369294 0.455113043713031 -0.0935839953582564 -0.0436903185742395 1.56547932836031 1.30925855732291 -1.1680947074948 -0.339327166802379 0.0662664498022352 0.444617032554123 0.572706753291654 -0.162420091737675 -0.242720681940637 1.03407912314749 1.10975502382927 1.55263172261973 -1.21442376912475 -1.82449349605441 -1.22003059004636 -0.355992229317914 -0.348080788787550 -0.646644050765433 -1.20287710632648 0.113022882647205
MMP0292 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.661285941218245 0.229438158193093 0.133377289626178 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0343 0.146989261576012 -0.289565813873197 -0.628967673784872 -0.385966347787576 -1.67275456380972 1.7947705243637 1.28608588438609 1.70607247160033 -0.264628310784699 1.31061394399203 0.998174598218831 -0.662040141273287 -0.531541663394434 -1.34234705512944 -0.76732072600813 -0.849131543616887 0.619703512585651 -0.0806006063000758 -1.66123495304328 -0.0244399588943922 -0.398743668427252 0.673424916929142 -0.501631108756673 -1.47305706251295 0.0244399588943922 1.14708633888172 0.573224511360468 0.8006318214793 0.32257558762297 0.446732024525667 0.0769660981049567 -0.253091001175444 -0.228858725670071 0.612613543417844 0.618110046471423 -1.69615955383746 1.76324251834841 -0.205235002278962 -0.155517808226156 0.860271223364631 1.19255227643183 -0.88321809773278 0.113853159884265 0.619055083245459 -0.074633998361542 -0.372866928446979 -0.368009994386180 -0.268836756398671 0.675198708623613 1.74853631549865 0.90896330481103 -0.159908594820835 -1.81840535858958 -0.513002784550965 -0.142679832275999 1.51040787644297 0.480742258998040 0.321672266160448 -0.718692828456768
MMP0562 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.414610380617429 0.518710613866051 0.0649030916081757 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0663 3.27796439889584 2.55883870181207 -1.06502614160037 -0.726081488582739 -0.555633990566205 0.822622973817659 0.524289416601465 0.890031654297707 0.199130293827687 -0.887584713022326 -0.703018229094471 -0.600074368695935 0.142494430543032 -0.489523492070271 -0.301373695948785 -0.645155808665214 0.0738530199045587 1.24511473917962 0.0724706162671405 -0.235890778230151 -0.635322482515026 -0.322594730448152 0.134558587031304 -1.01074137915214 0.308958171310944 0.0468970815335829 0.210183191739099 -0.0468970815335829 0.000906182276614797 -0.138340604012706 0.260181445002514 0.218733090594201 0.0480590009353105 0.097258077462209 -0.000906182276614804 -0.337642305540098 0.881104061726131 -0.0427565236302476 0.102855412919867 0.495869279705489 0.360648513233019 0.585954648798214 -0.670259898517898 -0.119555360612598 0.252376400896366 1.06851690093201 0.610809799635349 0.678575385707329 0.214127038077362 0.676344608131724 -0.576048829512353 1.49110616885912 -1.21785125192871 -0.368102154532839 0.0586273189485635 -0.31414731301956 -0.0586273189485635 -1.23889768146682 0.291550661859745
MMP0675 -0.71139582268986 -1.03780583696979 1.48032602114377 -0.121417020610039 -0.580546693900107 0.15975036041193 0.207869611509097 -0.456715760267009 0.608562747073638 0.742799421614299 2.63269916337454 -0.739155566232211 0.312167343591872 -0.56723980776852 -0.07355801629476 -0.947292394344042 0 -0.360560585095161 1.74473733967809 -0.499215170634372 -0.553870262795967 -0.446434935291747 -0.387616739095124 -0.332614822118968 -0.668028878301083 -1.73323158651647 -1.07689320121079 0.877742190050099 -0.863868587367012 0.0998053712445535 0.340980697913472 0.285232256651702 0.297470950754223 0.0309235608990011 -0.0309235608990012 -0.244991558404125 -0.517177649093711 -0.0579340965823813 0.0685693413656204 -0.138663376055987 -0.190637514933280 -1.24894255270127 0.500469335684822 0.0812710037411184 0.495703042319824 0.83109851939383 -0.300181710352942 -0.134060662062076 0.563436884217187 0.515832610192404 NA 1.51681142873822 2.1856450897373 1.99885290813307 1.50000181699590 NA -0.902953807615437 0.581369311976093 0.341341551929876
MMP0790 0.284456773229566 0.670538946690575 -0.0780443820229521 0.745948484032159 0.366074267046428 0.165465500552066 0.235688178659253 -0.993191342332575 -0.613944785991965 -0.170263883738716 -1.42605206877902 0.633618325415221 -0.204504867085230 0.59652468623804 0.0222073873471259 0.702777121304403 0.343527291605929 0.423349620219177 0.05562121762834 0.893334005157597 0.215466197102123 -0.4809341065584 -0.347168806731172 1.7666787533051 1.39122845845203 -0.535603829696922 -0.0556212176283399 0.961739908418653 -1.43213609312196 -1.43800410385370 0.826977742885437 0.168410006668495 0.0945027005720585 0.456534393542875 0.36675072851926 -0.627962270474468 -1.00737632473821 -1.66645764358289 1.08932809083080 -0.587031237557429 -0.516650280889857 -0.275308616771475 -0.60210795639274 -0.563995342487947 -0.600067926513747 -0.330765898032242 0.0624470301238411 -0.0997652528510206 NA NA NA 1.37329485488785 NA 1.15893081745873 NA 4.55483163747544 0.54400986376316 -0.446297049176075 -1.49589029339194
MMP0819 -0.0553440791361218 0.402091858587204 0.858766932462525 0.507301243910844 0.784063388157714 0.0524378473468068 0.586759776202276 -1.05864610326622 -1.88050090797432 -1.16116029771807 1.39931216777467 -0.801721224941753 0.206734826246541 -0.590371466296324 -0.0140170105160943 0.724451252232235 1.54916890364744 2.37022499185511 0.353147503456755 -0.712898714442335 0.0118312350029889 0.521546886107689 0.846520748883302 -0.0118312350029889 0.718550456103266 -0.05765794524918 0.135481868213248 1.03857194801708 -1.09754283344889 -0.850240197982582 0.804973136612012 0.432323657800272 0.498332159879974 -0.228746597041969 0.0897724771670965 -1.03159285540350 -1.72564542490051 0.548318655232469 -0.208862051981495 -1.33932190768349 -0.199984112872073 -2.59626316199314 -0.961839805601334 -0.842086080220448 -1.43291401066193 0.0140170105160942 -0.80649497676364 0.097703077450371 NA NA NA -0.274303783926806 NA 0.856486205695545 NA NA 0.61252812409285 0.0999341787091093 NA
MMP1023 -0.171721619782349 -0.343295746953806 -0.435035676472134 -0.106159150981658 0.0513716558137384 0.78126471448725 0.500797561840789 -0.35907497069599 0.0510548666946559 -1.15248753467253 -1.31944561178035 0.225781330801865 0.210601189697754 0.200542895302926 0.287984976701770 0.410449802730261 0.283798662686534 -1.49763590648426 0.179716706738691 -1.33584984996441 -0.739190739215037 2.17513546207284 1.92574136938735 0.565825732600372 0.947039263237978 -0.253159341519818 -0.191244377649002 -0.95962153683383 -0.92335716970545 -1.08529435519397 1.25808881551328 1.01241451788175 -0.605924780623434 0.887730257755047 0.724550125629303 0.137233249115421 -0.158926746735070 -1.04536767876709 0.184385885775155 -1.73419015757799 -1.51218258532838 1.03932396075941 -1.30719573576147 -1.10936243861073 1.21013117432703 1.10505338805368 -1.99016794086942 -1.84957875173231 0.81542137362814 0.989598114355113 1.02959381870916 -0.658884183506588 -1.01833011830972 -0.697312598312976 -1.4753688134322 1.82179322195842 -0.561939047964168 -1.62305183676772 0.0434913735962357
MMP1137 0.284887165311856 -2.14870587966512 0.679905755555545 1.43654774871703 1.20448266244794 1.37658396169881 1.13623628490638 -0.324252207274525 -0.422126052524271 0.071690133031395 0.511604855465554 1.10643065275990 0.808598414184198 -0.541743230905314 -0.581963845464043 1.16630843072844 -0.071690133031395 0.589506577591858 -0.425510815596997 -0.694430287172476 0.29366940612775 0.464636936657542 1.97522614027184 -0.0528810933032969 -0.553410893518556 -1.61307354615200 1.78860687844394 0.64829138689903 -0.96822718168746 -1.581991419125 -0.641016759421035 -0.0865209914160225 0.462663451806092 1.14840744555864 -0.854827132361819 0.733547772779617 0.96320565078281 0.258092307962388 0.0788459958625789 -0.137440424909286 -0.0770536021277605 0.266392681889858 -0.449306293255295 -0.470340430449447 -0.261176593840628 -0.224066146795343 -0.521571171751877 -0.836660525312032 NA NA NA NA NA NA NA NA NA NA 3.68758644405568
MMP1167 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.76521307672332 0.559769090817606 0.0583566153212971 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1188 -0.935366304294938 -0.202600017324043 0.110953327627451 -0.139172200731464 -0.249686190406794 0.517775534032294 0.265567656031326 -0.112789671624662 0.225790631262626 1.00170278267739 0.573840511141746 -0.464550763418703 -0.725447076156247 0.145873169104079 -0.180705684200473 1.07046649077159 0.618111478075957 -0.537734343607066 -1.45799240586656 -0.342714499893243 -0.0656848152920171 0.313821390065182 0.675582569229982 -0.304370159808135 -1.04412251694801 1.63747510812025 1.462933191842 -1.51118370016029 -0.903652963068383 -0.596750261440898 -0.479063913280730 -0.108924175854606 0.312236261468386 -0.110820343367905 -0.191844647193365 0.108924175854606 0.419484131240677 -0.171007143189334 -0.0659012783669796 -0.593344795471 -0.702608525015209 0.946986332097646 0.244342668509636 -0.224672805042633 -0.13748846687223 -0.0832803908384543 -1.18447599448772 -1.00081746748269 0.4567823013739 0.66834121821649 0.940321366452376 -1.14582742414902 -1.16355294211839 -1.05516599312915 0.0135193704479647 -1.09945409393169 -1.39531194582983 -2.12837518124684 0.618801614612558
MMP1612 0.825623144417347 0.931497157980569 -0.366991500550704 0.501243684306745 0.329381782524199 0.660145583714966 0.99452895159856 -1.11190701644783 1.15870454668870 0.168876336223071 -0.589452901965841 0.724731704138583 1.15538011835786 -0.677006233867003 -0.59688489693359 1.02561630603744 0.944769074406827 1.07352191740053 1.30747931067209 -0.687617093847263 -1.87989094628153 1.36348057359248 1.37876632153643 -0.590535551406842 0.0439758981377125 0.555907222791544 0.882390209628119 -0.0439758981377125 -0.840605138073176 -1.37251122880666 -0.264611098352107 -0.181335243937616 0.93073165753214 -0.524464578352657 -0.380977391032727 1.28723047973433 1.95257339075929 -0.258319726653129 -0.0443797337174306 -0.267530662861134 -0.304056342305347 0 -1.11596460912833 -0.971905554887718 1.15212341493901 0.98929327446154 -1.17498014115089 -0.991441720201458 1.58721000524100 1.36106884530734 2.37656330929445 -0.437901464757663 -0.567892827849979 -0.400550307026807 0.0168447376282325 -1.47888977604014 1.97031222150909 1.75711723367415 -0.415482408617561
MMP1649 0.792952184931512 0.514957973577452 -0.119792221778047 0.750005689360197 1.37797550711248 0.356406705049461 -0.303893101736525 -1.38641107467204 0.43144623710074 0.141906418953348 -2.07118932273077 1.58462483273710 -0.883297300843895 0.981788579732542 0.229123393788042 1.06175709893422 0.576556249249252 0.79628136851984 0.350445641678065 -0.0137614518388531 -0.42360799415444 0.0247521755765938 0.320576948172281 0.368353758585743 -0.161343407064389 0.35625055564686 0.0137614518388531 -0.395677403904347 -1.94480955461868 -1.36062822764026 0.211793550507316 -0.458501613672951 -0.613823977540057 0.96798783753767 0.742805040738872 0.563472369047747 0.312136599248855 -0.312136599248855 0.599585509164109 -0.394126161986947 -0.542506376784813 -0.761282263433694 -0.564672018017687 -0.945247296259329 0 0.172188842028803 -0.153366989565042 -0.392397331763593 NA NA NA -0.499070148446816 NA -1.56793768999100 -1.60027601353683 NA 0.856887489457286 -2.50637989667289 NA
MMP1651 -0.455863251011639 -0.319906609634369 0.212800672844187 -0.678521911564264 -0.0270734367813911 0.211495797213622 1.05030267484536 -0.715286617670926 -0.534527162669271 0.165765588211583 0.0495465787963618 -0.540362567360092 0.122889068956234 -0.991664685907315 0.0372469002388086 -0.257488295659112 0.315750423488198 -0.525228321977237 1.58660533600444 -0.319713149535380 0.655576584672801 -0.266484185506402 -0.65721335500657 -0.0386942747682839 -0.525441898956249 -0.0377791980436726 0.0377791980436726 1.22211648442255 -0.902500419790838 -0.847809240337172 -0.336277929202472 0.00522815896440379 0.487182179961732 -0.381636731713458 -0.0678905578218734 0.35832871501347 -0.249691428329840 0.982462157452945 0.860234893169601 0.345468100484479 0.554175462619604 -1.14447432959888 -0.175423508713797 -0.202211322960201 0.481334768526514 0.613431683472458 -0.810983587179967 -0.745126900285023 1.04746444812133 0.809685679014807 0.926205184128385 -1.23944016060384 -2.04248967125454 -0.992165983166915 -1.39249306186957 0.692548213163345 -1.18670606139513 -0.96691326188033 2.80482366361281
MMP1652 -1.29955403773762 -1.50594326256842 1.15602854793678 -1.11633250843455 -1.20794585838222 0.879270395916547 0.796009994015456 -1.12870605354448 0.60358164793474 -0.0293967885492763 0.0984837199468606 -0.0244198217155189 0.0244198217155190 -0.979433340384262 -0.837550199819388 0.797658402188272 0.747120279844757 -0.643545706951152 0.758927252630452 1.21133079535677 1.23080211240615 -0.730446140172026 -0.773731846471743 -0.904208494148142 -0.383504440767701 0.160156304980340 0.668698445992875 1.47215389367477 -0.771760332302802 -0.83334853145449 0.39417429333162 0.385803332231592 -0.332086662730835 0.157374102840487 0.232073628656411 -0.157374102840487 -0.722694973924696 -0.651595235524606 -0.198194156808431 0.837821433546219 0.831809621636907 -1.19718511241626 -0.913953596758908 -0.971226664843885 0.898009802614825 0.937664316780637 -1.05891116317196 -1.01365785780739 0.745543309850433 0.824709680822793 0.949567813051326 -0.91388862518994 -0.918762764172374 -0.822437231354236 -0.989314889129307 0.863366616586167 -1.30899384113305 -1.21469140136707 1.19037684174674
Mma-sR02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.124882575945290 -0.275561689466147 0.212009954511772 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
RNA_6 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00173428056355217 -0.262801314730272 0.311129933101259 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
[+] Show/hide bicluster #120 motif PSSM #1. bicluster 120 motif PSSM #1 Methanococcus maripaludis S2 17x4
POSITION A C G T
1 0 0 1 0
2 0.5 0 0.5 0
3 0 0 1 0
4 0 1 0 0
5 0 0 0 1
6 0 0.5 0 0.5
7 0.5 0 0.5 0
8 0 0.5 0.5 0
9 0 1 0 0
10 0.5 0 0.5 0
11 1 0 0 0
12 0 0 1 0
13 0 0 1 0
14 0 0 1 0
15 0 0 1 0
16 0 0 1 0
17 0 0.5 0.5 0 [+] Show/hide bicluster #120 motif PSSM #2. bicluster 120 motif PSSM #2 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 1 0 0
2 0 0.5 0.5 0
3 0 0 1 0
4 0 0.5 0.5 0
5 0 0 0 1
6 0 0 1 0
7 0 0 0.5 0.5
8 0.5 0 0 0.5
9 0.5 0 0 0.5
10 0 1 0 0
11 1 0 0 0
12 0 1 0 0
13 0 1 0 0
14 0 0.5 0 0.5
15 0 1 0 0 |