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[+] Show/hide bicluster #118 rows and columns.
bicluster 118
Methanococcus maripaludis S2
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[+] Show/hide bicluster #118 rows (genes).
bicluster 118 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #118 rows (short gene names).
bicluster 118 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #118 rows (long gene names).
bicluster 118 long names
Methanococcus maripaludis S2
15
long_name
[+] Show/hide bicluster #118 rows (NCBI RefSeq gene IDs).
bicluster 118 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #118 gene upstream sequences.
bicluster 118 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #118 columns (arrays; conditions).
bicluster 118 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #118 ratios.
bicluster 118 ratios
Methanococcus maripaludis S2
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GENES H_vs_Leu_3000070033A.4 H_vs_Leu_3000070033B.4 H_vs_Leu_3000070260A.1 H_vs_Leu_3000070261B.1 H_vs_PO4_3000070034A.4 H_vs_PO4_3000070247A.3 H_vs_PO4_3000070247B.3 H_vs_PO4_3000070248B.3 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070250A.2 H_vs_PO4_3000070253A.1 H_vs_PO4_3000070253B.1 H_vs_PO4_3000070254A.1 H_vs_PO4_3000070254B.1 S2_vs_S40_BR2_3000070262A S2_vs_S40_BR4_3000070273A S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR3_3000070251B leu_vs_PO4_BR3_3000070252A leu_vs_PO4_BR3_3000070252B leu_vs_PO4_BR4_3000070256A mma_0070m_0.2 mma_0334m_0.402 mma_0492m_0.598 mma_0649m_0.885 mma_0783m_1.23 mma_0849m_1.4 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070036B.3 rapid_H_vs_slow_H_3000070037A.3 rapid_H_vs_slow_H_3000070037B.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_PO4_vs_slow_PO4_3000069786A.2 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069789B.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000069790Alow.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024B.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0082 -2.1714405498431 -2.15484836727232 2.14414321008733 -1.08914231539771 0.482722732792759 -0.528825228948266 -0.758707028103618 0.0494213239993319 -0.220219144665766 -0.145873649926021 0.150666565732096 0.157898663005646 0.440954708144142 0.613880057783188 0.439824396031938 -0.790817115207183 -0.689393111493094 -1.08911149071980 1.17560526397215 1.22562642107912 -1.41309923292609 -1.23359747884744 0.652660223604838 0.747269896058823 0.0351862559159066 0.0571355943428531 -0.0413085793896548 -0.0351862559159066 -1.51445306667403 0.243209137063114 -0.0251823531534540 -0.0257959812527883 0.0251823531534540 0.0989593315580435 0.124118083630754 0.572062580608734 0.851238605704276 -0.695480481905627 -0.726875141025178 -0.85638199109054 1.26365065036519 1.19781640778091 1.49826572277616 1.26589811438231 1.16025602473858 -0.83481349045069 -0.0902742962538365 0.54661798231275 0.604961429623223 0.528334503360099 0.597625427731949 -0.881073657011742 -0.402671974163554 0.908642134597121 1.06277687202858 0.85742249850459
MMP0083 -1.96102163736549 -1.91272215754303 1.14316700808910 -1.29060537754854 -0.392291495484583 0.0367928483780434 -0.464220131159033 0.234659146964987 -0.0161396277238078 0.0760285597032354 -0.283144916334241 -0.0459523799369705 0.0161396277238079 0.0796290237426283 0.736223530943627 -1.10091906175548 -0.938442710703674 -1.64813940205567 0.810897824244684 0.89191258659246 -1.34980206213049 -1.36755909914293 0.736221312039121 0.756841804657089 -0.0384828760964503 -0.0551597357279532 0.0384828760964503 0.084405557692536 -1.22859852123985 0.238619715629814 -0.0429153551403566 -0.0238275013982100 0.02382750139821 0.156580723473952 0.119956173404370 0.391576531906848 0.435135439699224 -0.97731633554878 -0.937162613136704 -0.891468111082712 1.06377025277835 0.759508419576707 1.36090404563319 1.37581570533768 1.57486047677686 -1.19743459788734 -0.595105342763448 0.416570326296653 0.423303676030968 0.469793181232432 0.575904424562084 -1.16858096721266 -1.40794440519629 1.08158251713039 1.03395563347220 1.01337200446565
MMP0249 -0.811963816598904 -1.31663128958051 0.94460010604515 -0.494248095703941 0.857702864472747 0.424780770389861 -0.00139334863935538 -0.513621938395348 -0.627687999367042 1.25358783182986 0.95137836851029 0.763809714701825 0.423026330807776 0.669732927900826 0.396985063131245 0.0711365186117539 -0.9728468256303 -1.27302789825896 0.881669671328971 0.736968757475802 -1.34917735954748 -1.40921100862470 0.673550926907699 0.640442252037172 -1.42875352036325 -1.36155661084799 0.910101625390352 0.924587464529393 -0.67874858112477 0.47536765736609 -0.934778584750453 -0.066684841714682 0.635649437630308 -0.0297700186226259 0.0297700186226259 -0.198867144748910 -0.635903631568009 0.88361392668885 1.25823098857072 -0.997665837614486 1.45606680698427 1.46059819622014 0.775809443839805 0.712924562544558 0.997610846805907 -0.830561915306527 -0.661502892306924 -0.0545446117756167 -0.131033271346908 -0.42094244891474 -0.407121479683727 -0.744707088148575 -1.96351014562729 1.02730564670485 0.477497591394387 0.702106557454109
MMP0596 -1.64770052878765 -1.52380345405089 1.36563609558879 -1.60334888784598 0.472058388912616 0.663764187873798 0.384987767735812 -0.721622667320108 0.34634277207584 -0.583854565967769 0.36307589523564 0.236935143635032 -0.829258335027422 -0.628896589481466 0.381607179219052 -0.730420494507374 -0.381607179219052 -0.971029834892136 1.08582344481752 1.16911780927277 -1.07277892304611 -1.13015633643314 0.660575411929468 0.673408951918342 -0.333236758887702 -0.417920227687087 0.333236758887702 0.38207790800916 -1.35196784841785 0.673565822659411 -0.249330712907674 -0.00572117185938526 0.04725074973153 0.100120507539242 0.00572117185938526 -0.856076821308551 -1.19190653629953 0.75601400708934 1.01256714187050 -0.573641291431631 0.900759109001804 0.84760354815523 -0.416107025549065 -0.438200484427946 -0.467676153185272 1.09787898571943 1.25353074223019 -1.08114088987155 -1.1744580792379 -0.82888341978749 -1.07208368899014 0.166643877739948 0.162342530301158 -0.244931172879150 0.114057849267674 -0.272930212317654
MMP0971 -1.07617364383756 -1.57411112225664 0.54924571402982 -0.610471059097431 0.209248930076805 0.181476528574477 -0.57408828420131 -0.0425609027881312 0.192578495652388 -0.302530723128619 0.270962734862313 -0.00516783459025568 0.427118939855415 0.55174290209868 0.503863677648669 -0.279552960693971 -0.673622107247532 -1.93298346259394 0.188977366548549 0.0824479689453216 -1.28483618162468 -1.35164132776584 0.771349761354601 -0.00565746576646564 0.480754153377768 0.0056574657664655 0.0294798111493336 -0.711109987210351 -1.4531272655374 0.523554615511812 -0.446117314504364 -0.135771126876495 0.135771126876495 0.447396565071668 0.398614476771821 -1.71370551170817 -1.67641802939095 1.27968801513942 1.16564479353274 -0.8853017092881 0.792154940398286 0.689439626914967 0.829984942512717 0.790608385746207 1.25185207508711 -1.42596727965913 -1.48550647608093 0.340242118323485 0.499783728381751 0.0499892022009673 0.00516783459025568 -1.57639028923752 -1.82116329951968 0.636314078188221 0.477458086542729 0.582827745854688
MMP1322 -1.08075328940958 -1.11239765231299 0.884253786158976 -0.468263525298656 0.396918327976051 0.0419085869388975 -0.0730198598366538 -0.0330417074847372 0.190826157531907 -0.091181452034759 0.740923945502536 0.778324394505507 -0.641513983659757 -0.645061783423658 0.486466848712082 -0.493649831221429 -0.486466848712082 -0.577195211350224 0.679105787487507 0.684064591093239 -0.672923488321812 -0.696524350845873 0.762784235526769 0.842383643708115 -1.7469670760351 -1.69715372918555 1.54388952162304 1.66865269648281 -0.208703760463788 0.880427606270714 -0.65462800440632 -0.151068001016843 0.151068001016843 0.275895364475492 0.297234858159181 -0.582658393010174 -0.489379832455266 0.928679076239121 0.845058952496277 -0.747090603751126 1.29235966728652 1.29383453744543 0.903686922495754 0.747834351286085 0.638924750322915 -0.113959313194276 0.422307168103817 -0.148039836345826 -0.227725024770149 -0.085405306900207 -0.101313395604097 -0.0285509136548235 -0.213903374817263 0.679869683754315 0.66243773063031 0.632014411129904
MMP1365 -0.93325931662539 -1.16224170798075 1.25874079812054 -1.32406224672888 0.560187713541186 0.271661964599227 0.743607799387776 -0.808896912578955 0.0919305466816511 0.852433211860025 0.605146383351477 0.507966853279465 0.232018253769572 0.399470608668469 1.33017891927705 -0.511088623719033 -1.14580678804929 -1.42508529267300 0.911784904321712 0.806191317677731 -1.1487063750658 -1.19754192024884 0.774725414678963 0.829701260774948 -0.332832045314527 -0.269218490984081 0.269218490984081 0.286939094219379 -0.654912600128329 0.203982822438608 -0.316648195130025 -0.0338831801890574 0.0338831801890574 0.112893286459505 0.129303077761829 -0.833400550972947 -1.13373819565995 0.832149878203062 1.10984903361203 -1.30620189014821 0.806962307600084 0.7461468840474 0.807772414235672 0.613015999111074 0.885779415058417 -1.24492769112813 -1.14586642778082 0.137229152976043 0.282531743430907 -0.218006858959219 -0.107286388633745 -1.15746455962157 -2.07449582109059 0.962561225096878 0.538795612484073 0.685954552108424
MMP1405 -1.66731995716163 -1.49283724209465 0.804758837102627 -1.31344454241471 1.24819723597689 0.217731000055362 0.381129398417375 -1.30014189314842 0.106543534748630 -0.607991602832251 0.154234668340215 0.133988164512664 -0.181658749221884 -0.219627304396575 0.423535809342543 -0.274703413550013 -0.191067984019148 -0.320608338910235 1.85045556035794 1.89472353362944 -0.795102605625786 -0.838141540698196 1.12550887571478 1.2497410315824 -0.111127363314506 -0.0998534417695815 0.325199658245109 0.0998534417695815 -0.690675098529505 0.461876511262577 -0.472741502860929 -0.0643893712618128 0.106648470162771 0.0997291860396105 0.0643893712618128 -1.15132714256346 -1.07014785288335 1.54554209303799 1.43052972115729 -0.977414686215558 1.78116129428567 1.77386646877486 0.543021218084717 0.587856712611245 0.722435046967265 -0.361353869031775 0.187589786507926 -0.205705267251973 -0.325794979785452 -0.0290214093827076 -0.160792192029327 -0.834541513750566 -0.941268960501205 0.833309416628291 0.728211295216724 0.815754856002805
MMP1409 -1.73331770495970 -1.6420571916715 2.43807194372309 -1.46925952280941 0.189732449574591 -0.47753227001266 -0.567347978837874 -0.100977938743153 0.324459067237581 0.182128627972028 0.560382832898971 0.400428520535289 -0.161416446686280 -0.114014966150152 -0.0143868524056401 0.0641481465893448 0.0143868524056402 -1.7556472255163 0.169699806893144 0.235926257924782 -0.570374852016645 -1.61807545835151 0.699483466111333 0.716076487730882 -0.174898234095431 -0.169699806893144 0.325693766398921 0.326623996688745 -1.51777421018450 0.184407798211741 -0.395884125249182 -0.0497450831847717 0.0497450831847717 0.0516562352539318 0.106895880637539 -0.769997234782163 -0.777620244939122 0.741692463378857 0.670938522618923 -1.34645812029524 1.09957892172111 1.10416565367568 NA 1.10284674959517 0.691346537930934 -1.31485038689748 -0.653367514571801 0.10346085567191 0.277324324368731 0.0201871598697556 0 -1.16444659907400 -1.00693980163917 0.59468663600907 0.763668408962963 0.574495067351196
MMP1410 -1.15897925019371 -1.22806547047430 2.09123479246974 -1.85226395279 0.466359238859189 0 -0.212443877410802 -0.477053886944502 0.332209842097632 0.241288703527519 0.820315021041543 0.820979495465553 -0.62884032542227 -0.632447078806086 -0.0511260201953023 -0.214542772382657 -0.596230646354936 -1.03645850953826 0.672983475219068 0.606330769231761 -1.61819156520570 -1.62978154129195 0.780594777256413 0.787520128142297 -0.112794449543667 -0.331857214487425 0.203887216464353 0.112794449543667 -1.30738730911541 0.270618187670114 -0.467684822655482 -0.0530255379820254 0.0530255379820254 0.197467863667829 0.130906136977529 -0.697889268653829 -0.728180634152514 0.500574208995655 0.554961723881831 -0.91826744793551 1.06365695697113 0.98415233552256 NA 1.07954427908645 1.16020043653297 -0.982796945653283 -0.726177160157049 0.365464046585564 0.335485459307149 0.314792282688152 0.267361822889055 -0.947939558474922 -1.43980352191324 1.10565773906300 0.980645561929881 0.975930933125132
MMP1412 -2.06454893420542 -1.89502382959585 2.12161992952798 -1.46028802416151 0.304307980538831 -0.757148348474547 -0.647946464244661 -0.401032329078003 0.140706259861652 0 0.494662364108769 0.339460752880465 0.333884766044451 0.229457922200605 0.443052209452790 0.000850952153277428 -0.330700407875451 -1.33189220845202 0.777133331051119 0.763230509505434 -1.39866311977088 -1.40239307344536 0.664301210898508 0.8650478762927 -0.345022403629437 -0.316548831821005 0.316548831821005 0.356455337134496 -0.900217671952472 0.314359993089544 -0.461948180235152 -0.0608232165855534 0.0608232165855534 0.105830025583362 0.0831606317994291 -0.788187374803502 -0.671058107007828 0.593242340995122 0.573043440111296 -1.24530847200415 0.784608708843948 0.77233827766574 NA 1.02552694949772 0.598300130231163 -1.58073380560226 -0.88500680786366 0.184090122245947 0.354363350800576 -0.198829204537007 -0.172993636276843 -0.88963138492635 -0.856844154924532 0.470859745837069 0.687845409725585 0.464001093774087
MMP1414 -1.20335937382303 -1.40043110936373 1.31680932894745 -1.03240865072313 0.229205028353414 0.148088469704001 0.0718531314769875 0.169762645859193 -0.052976831588404 -0.272041846231614 0.45225097036994 0.468608093084859 0.387894434251542 0.343234431026656 0.308175389983804 -0.287953721269339 -0.359651926121606 -0.851631948628084 1.14817385402706 1.04110188254709 -1.56039968936505 -1.48471566518013 1.24665292549445 1.27294210545247 -0.390609753858924 -0.276468505719743 0.276468505719743 0.361521271764165 -0.95085126062211 0.341076219393866 -0.427125417601295 -0.084992626099228 0.084992626099228 0.168781251423994 0.135904658847884 -0.741450913590326 -0.80739152322926 0.760903534021724 0.659700699461828 -0.854244604997186 1.14413344846839 1.07268228409967 1.05817566270967 1.02006838823162 1.11410901105624 -0.79915633039951 -0.419134670179775 0.203618392322103 0.193220542956996 0.155514843775007 0.142810988547263 -0.857842710120548 -2.62374511094555 1.34275658803320 0.0449469288758081 1.05173679174277
MMP1416 -1.27610677959732 -1.42323927421471 1.53600185547921 -1.28476565397152 0.162076894769018 0.191581370107323 0.0219426940396746 -0.268879711041182 0.156281898409876 -0.513121150850772 0.175136235597422 0.323189019328942 -0.194296713445240 -0.0219426940396746 0.233351880357140 -0.132934180885342 -0.0806557538102726 -0.95676602195922 1.06895640546434 1.06911736754542 -1.44867887334166 -1.41269882279918 1.15616697307088 1.26017771010633 -0.25595424872038 -0.251043863570567 0.251043863570567 0.328118875310588 -1.02169508686283 0.441511105609782 -0.493685114150795 -0.0847598805420667 0.0847598805420667 0.153318358431924 0.172174228185343 -0.568581274857749 -0.575279484850093 0.571579230761556 0.597130350947782 -0.740513060540365 1.15509307597962 1.23537278730314 1.05757866250991 1.04876291571868 1.07841006135763 -0.527351043094481 -0.262376332050994 0.368773221912874 0.314935804236242 0.480004301257837 0.439485798847904 -0.514040880793772 -1.83990133431071 1.23577319120641 0.438572305600785 1.06934715954047
MMP1419 -2.00089308045962 -1.99092415974999 1.45494649693239 -0.612445134529031 0.444038541546991 -0.699909423775486 -0.440772283194143 0.0100888260669300 0.259504281973336 -0.251749290928533 -0.0100888260669300 -0.0833505995261668 0.406481696647006 0.48737621397182 0.539915619261232 -0.126450168287868 -0.103667057823530 -1.12184144566281 0.79482376896317 0.923894661571419 -1.39219487458063 -1.17479458229609 1.07263663252822 1.54322110691150 -0.321639439977437 -0.256598919979666 0.256598919979666 0.387985501561643 -1.17615678477192 0.463381094858893 -0.510140808318599 -0.108959988038426 0.0490046177358749 0.135296547961281 0.146083039239457 -0.924025055584733 -0.878793461741473 1.05312281142846 0.912190115392573 -1.13131403598566 1.12600883007348 1.19473700947890 0.917471344053558 0.84115266908374 0.5657906132667 -0.94607074684744 -0.281449963814406 0.238389287281957 0.359696252385575 0.0817467762327114 0.221984237677862 -1.08507450492374 -0.649740099048438 0.720878637187083 0.85675351615604 0.752992393927933
MMP1543 -1.01703142352333 -1.04922029834346 1.23876672724630 -0.720482142852237 0.605983322717388 0.246765014474760 -0.00497304501036867 -0.237734083863484 0.00221592160906130 -0.271109905374556 0.675789990675245 0.839980874718307 -0.198465474249258 -0.082555516751482 -0.278858458595829 -0.433267226996796 -0.413443263315233 -0.709582653772097 1.02402736831092 0.95714027562851 -1.96926848250944 -1.68919316437921 1.00405597596820 0.94600176219548 -0.464368873396073 -0.556866374757838 0.464368873396074 0.491510098663754 -0.649479452748663 0.189828021338098 -0.239825523064277 -0.0187923481448156 0.0191652650463427 0.0481195987577737 0.0187923481448155 -1.09946839988747 -1.17482167593434 1.22485992330048 1.16636689985303 -1.50031817378206 1.98479629772264 2.14000560409636 0.914091914039852 0.776210402852211 1.07562263112061 -0.165101864414421 0.383316926894569 0.00150000950696288 -0.00150000950696288 0.00308465529733828 0.167436639795633 -0.0199239266115168 -1.56850168061197 1.06264881335865 -0.0178994659026083 0.814532113374513
[+] Show/hide bicluster #118 motif PSSM #1. bicluster 118 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 1 0 0 0
4 0 0 1 0
5 0 0 1 0
6 0 0.5 0 0.5 [+] Show/hide bicluster #118 motif PSSM #2. bicluster 118 motif PSSM #2 Methanococcus maripaludis S2 18x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0 0 1
4 0 0 1 0
5 0.5 0 0.5 0
6 0.5 0 0.5 0
7 1 0 0 0
8 1 0 0 0
9 0 0 1 0
10 0 0 1 0
11 0 1 0 0
12 0 0 1 0
13 0 0.5 0 0.5
14 0.5 0 0.5 0
15 0.5 0.5 0 0
16 0 0 1 0
17 0 0.5 0.5 0
18 0 1 0 0 |