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[+] Show/hide bicluster #80 rows and columns.
bicluster 80
Methanococcus maripaludis S2
12x57
[+] Show/hide bicluster #80 rows (genes).
bicluster 80 genes
Methanococcus maripaludis S2
12
[+] Show/hide bicluster #80 rows (short gene names).
bicluster 80 short names
Methanococcus maripaludis S2
12
short_name
[+] Show/hide bicluster #80 rows (long gene names).
bicluster 80 long names
Methanococcus maripaludis S2
12
long_name
[+] Show/hide bicluster #80 rows (NCBI RefSeq gene IDs).
bicluster 80 NCBI RefSeq IDs
Methanococcus maripaludis S2
24
[+] Show/hide bicluster #80 gene upstream sequences.
bicluster 80 upstream sequences
Methanococcus maripaludis S2
12
upstream
[+] Show/hide bicluster #80 columns (arrays; conditions).
bicluster 80 arrays
Methanococcus maripaludis S2
57
[+] Show/hide bicluster #80 ratios.
bicluster 80 ratios
Methanococcus maripaludis S2
12x57
GENES H_vs_Leu_3000070032A.4 H_vs_Leu_3000070032B.4 H_vs_Leu_3000070033A.4 H_vs_Leu_3000070239B.3 H_vs_Leu_3000070258A.2 H_vs_Leu_3000070258B.2 H_vs_Leu_3000070259A.2 H_vs_Leu_3000070260A.1 H_vs_Leu_3000070260B.1 H_vs_Leu_3000070261A.1 H_vs_Leu_3000070261B.1 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070254A.1 S2_vs_S40_BR1_3000069792A S2_vs_S40_BR1_3000069792B S2_vs_S40_BR1_3000069793A S2_vs_S40_BR1_3000069793B S2_vs_S40_BR2_3000070262A S2_vs_S40_BR2_3000070262B S2_vs_S40_BR2_3000070263A S2_vs_S40_BR2_3000070263B S2_vs_S40_BR3_3000070265A S2_vs_S40_BR3_3000070265B S2_vs_S40_BR3_3000070266A S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272A S2_vs_S40_BR4_3000070272B S2_vs_S40_BR4_3000070273A S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR3_3000070251B leu_vs_PO4_BR3_3000070252A leu_vs_PO4_BR4_3000070256A leu_vs_PO4_BR4_3000070256B leu_vs_PO4_BR4_3000070257A mma_0334m_0.402 mma_0492m_0.598 mma_0783m_1.23 mma_1444m_1.58 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069789B.3 rapid_PO4_vs_slow_PO4_3000070023A.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024A.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0066 -1.83176570549183 -1.78393253586742 2.60468452677122 -1.02689890183155 -1.92404245840148 -2.11917426797567 1.15384364562011 -0.0466159532451085 -0.000683476885615929 -0.39171154773883 -0.311395037595371 -0.0646772588882927 -0.781340168403349 -1.28603262375941 -1.24711382173060 1.21250192523860 1.00979060037095 -1.06564505967978 -1.11895347294405 0.308606891364571 0.470306053173195 -1.71827769862018 -1.37777349708939 0.404137202602881 0.557222971490054 -0.308606891364571 -0.357606234337103 0.876087384558823 0.872308274837334 1.37457887825414 1.43919457630233 -0.979823417910619 -0.979897739081267 1.12639994426660 1.15523612928470 -0.415804377497524 -0.611275063789784 1.17011474626908 -1.30153001596220 0.199425486679439 0.105073333961465 -0.105073333961465 0.57177187819661 0.453649294515903 -0.0521301319714855 -0.123198926119878 0.314341108961295 0.403598806677943 0.42711293577658 0.448085051893861 0.814175934678279 -0.0832304237293814 0.183850475282574 0.0303687817241915 -0.315666761741084 -0.165381967676885 -0.385537111282209
MMP0680 -1.46517503917386 -1.59451620540017 0.64279620469272 -0.530828030618107 -0.353375842004089 -0.0517695299390079 0.68264376638582 0.0517695299390079 0.261473263360805 0.166556211141078 0.347187996004527 -0.150606056421737 -0.250373375987706 0.154636283329008 -0.329264672847534 0.21690406068357 -0.4925653017668 0.140172271068359 -0.140172271068359 0.347607648036606 0.622328844348276 -1.47891699937130 -0.692950784089291 2.06859801513809 1.87471608237774 -1.44841868317673 -0.566962026079682 -0.58742177089941 0.909652847398743 1.19692292612120 1.72214752312349 -1.44393883145485 -0.915480799172393 0.43995727824709 0.713814518421289 -0.603259645657605 -0.289492827130254 1.25445517664996 -0.784596001118622 0.37353693767248 0.289492827130254 -1.04121761921455 -0.30062274515721 -0.80070107362666 -0.758753713837282 2.16714317290941 -0.610924356886981 -1.58865522502349 -1.02901362333010 -1.25176646187136 -1.13556761323521 -1.53436588664569 -1.20502116536871 -2.04483574815831 1.62299341551707 1.23561649638479 1.26295804660080
MMP0689 -2.22344446672073 -2.32175268823041 1.57543089737697 1.07017585527508 -0.554878568783586 -0.677774082384505 1.24063266564263 0.629607635787562 0.558491780889051 0.168453925491157 0.509535673338506 1.02135381352923 -0.79094874740716 -1.63949790300500 -1.43372174159022 -0.0173664407682316 0.573815563190464 -1.17835087432798 -1.34510285206713 0.771206900078933 1.04768745367656 -1.12589986783126 -1.79923631548243 0.406604625791537 0.244658711175386 0.0173664407682316 -0.711173769563082 0.900864147455776 0.601486891988 1.24976386427605 1.32918403368869 -1.22723373992144 -1.31184032991587 1.10859675812307 1.12628675622506 -0.400093702808816 -0.312108878728161 1.15214060480927 -0.932913485330499 0.521722105582331 0.312108878728161 -0.508819467684086 0.00833815278722038 0.216165406073316 -0.00833815278722049 0.314343540336715 1.30358728084642 1.33635658183917 1.26551576804747 -0.197393786626275 -0.244001658968057 0.43557927974387 0.0178431891197482 -0.00254417993367332 0.0469359189934395 -0.392051845764593 -0.583958150254909
MMP1382 -1.89425317339176 -1.91499173847575 1.78469179857337 -2.07382087114004 -1.60707052351212 -1.57785186284009 1.16926232839682 -1.36417950533323 -1.14735145058585 1.24689103303680 1.30834804841031 -0.96003816626994 1.42780424698242 -1.37984284974707 -1.54437005947428 0.261608062718972 0.350594500907603 -1.17352202669266 -1.11772305381292 -0.0414348235693697 0.0414348235693697 -2.01446048879107 -1.76141052987982 0.473130199112073 0.822399817665826 -0.192571187294239 0.250111293557924 0.815395275462323 0.906914742935052 1.53674747543456 1.51956703964927 -0.7015326691258 -0.645532501036865 0.988553889537757 1.01323215395668 -0.0435005311795489 -0.329791629166139 1.40452366043473 -1.44510687878271 -0.124666201872480 0.135800945477463 -0.053507956298097 -0.240578579697115 0.069895514796607 -0.069895514796607 1.57734458089381 -0.562769498752401 -0.530609069365408 -0.424514471643222 0.222988278106282 0.218330458123198 0.0502551506640181 0.101924558430748 0.135859985257548 -0.137804307942704 -0.131456007023293 -0.0964350612169283
MMP1384 -2.04975180892215 -2.02558133033766 1.90079391494255 -1.47075608351082 -1.40825753861038 -1.46271983399346 1.30492951609456 -0.732054975519157 -0.715908158318768 1.20930080988126 1.16809659250156 -0.777612670842993 1.49023608185763 -1.17905580167929 -1.17184921162798 0.967142233971096 1.02792494503319 -0.821348816097115 -0.764159218078198 0.345406500563495 0.317126514501815 -1.84581905803062 -1.92400663405886 0.00187152160431701 -0.00187152160431701 -0.336122763992609 0.149209463527471 1.02338138842825 1.04888728610383 1.39100552162053 1.32873481549367 -1.31248884517180 -1.29069016410218 0.96463093389618 1.06414043523824 -0.559687274964803 -0.5963589920083 1.41810636084865 -0.921149389088436 0.0726660060235283 0.142974428641512 -0.189895024621703 -0.217847667468820 0.071215297759944 -0.071215297759944 1.64964996980033 -0.402358784634995 -0.356955967900112 -0.386250471796255 0.182944905105529 0.184966135584377 0.0744090817672211 0.0338964975128009 0.104867189778949 -0.0557298000409347 -0.078325903167893 -0.090591788289906
MMP1644 -1.18489915700948 -1.05498288316338 1.71190705068681 -0.923912916738165 -1.14483938604473 -1.18160870742966 1.14377655134388 -0.511546308524589 -0.293849010348754 0.405303567225641 0.528744129635376 0.1229397699474 0.108333577509596 -1.26174730505109 -1.18503561933234 0.930708435895627 0.952055083662792 -1.6539933791008 -1.26899794704382 0.816671400527102 0.839789612685553 -1.21465155309512 -1.05881108338160 0.545022051267203 0.301808947598589 -0.301808947598589 -0.318995515105525 0.925849733475934 0.866104788918635 1.59599059006758 1.52049100350672 -0.71574670809901 -0.66345979482425 1.26282449545878 1.01125882146249 -0.626716366036074 -0.599795097617363 1.33699873947839 -1.12690945315697 -0.160677024553662 -0.151632093949485 0.257167528511942 0.306926483604878 0.191648931077225 0.248844332139022 -1.94305487496051 -0.340554765804263 -0.420972104718975 -0.323133979627821 -1.08963698973572 -0.7243268531519 -1.29158837322529 -1.16173504747469 -1.28726191136191 1.84294422190417 1.98728026345522 1.84752791738821
MMP1683 -1.92104607850549 -2.10766412089493 1.87021648515076 -1.76502700871975 -1.25892364428964 -1.13185008556575 0.462896636601307 -0.0604339947849836 0.0824884012927657 0.173090046625950 0.499902826520887 -0.48591760021838 0.193916453298859 -0.985080524991459 -0.927458331015619 0.148339312639249 0.3213563723638 -1.17132484032058 -0.960320554146407 0.235602659178344 0.280105808612254 -1.46761623792103 -1.15598635865497 0.156301793870687 0.535671928635817 -0.148339312639249 -0.239122971334612 1.94386893715938 1.76913181518399 2.16470260407398 2.01765750112495 -0.69215997118334 -0.444634119595402 1.13565265815919 1.31057466338218 -0.370905438253531 -0.347238792141553 0.867160727494207 -0.87582747806222 -0.753112242380785 -0.431491295218509 0.347238792141553 0.0690083366448136 0.186417412350921 -0.339022095508882 2.57418720604141 -0.188782796084297 -0.0338778234451216 -0.0548585243181909 -1.15016036231935 -0.332880531770623 -1.50729654901647 -1.43893309824325 -1.49922116873233 1.11493270930957 1.09931593609492 1.38190639866026
MMP1695 -2.22161249718550 -2.07886681626130 1.85170732499836 -1.16308864458978 -0.552347213291188 -0.455457023754622 0.330986499734779 -1.17292573177454 -1.03311698400244 1.57964060608942 1.65339496867634 -0.0711905082448283 1.14324144459030 -1.11286705669500 -1.15846646467660 1.06689080010799 1.10244292060067 -1.00718970975106 -0.953343544911918 0.322392513758530 0.44837983505069 -1.42909106371240 -1.30888402494541 -0.0924110998260437 -0.110196810227980 0.0924110998260437 0.118197974878778 1.49288550034013 1.37595869533188 1.75486309027212 1.75213811343559 -1.28164997848023 -1.17304935164201 1.33755332356907 1.34084717243357 -0.806418436795247 -0.702793623507196 0.543478982904270 -0.67910678920708 -0.0372704515410269 0.167487639688835 -0.0988448745256262 -0.0579845848095391 -0.159457608226233 0.0579845848095391 1.74746210421014 0.863151699241847 0.761009823852375 1.03321945898774 1.00932346144385 0.865829886076873 1.08201534130607 0.864008668108292 0.744903624177888 -0.374077995721695 -0.688697962768067 -0.678413932373301
MMP1697 -2.43880520372974 -2.27885893024953 1.97673419459089 -1.18128735394818 -0.483027860427032 -0.425086383739921 0.116726716722799 -0.568893052883228 -0.735427973762657 0.59821539357094 0.654784145961055 -0.175445085561371 0.772556171055804 -1.70853580565561 -1.80329763482000 0.427059816598579 0.44382388000011 -1.26179075102637 -1.13572620416405 0.47135984173708 0.805421135720245 -1.44343631065685 -1.42412099650300 0.240797976489388 0.275249700667934 -0.240797976489388 -0.555185959868914 0.893623280970159 0.945206416254357 1.80445345078509 1.80868606823101 -1.40281654343088 -1.38471223642441 1.23324439846915 1.15045095472604 -0.641960221092272 -0.554310624848581 0.8200316042355 -0.226710767716876 -0.235970104982350 -0.0905597800269364 0.221613174257316 -0.0433635018454553 -0.319668675320567 0.0433635018454553 1.83686648906409 NA 0.957205945186196 NA 0.694402888689961 0.6865783937135 0.805039010339023 0.757776648839876 0.784785482127787 -1.17419070687546 -1.12953030046125 -1.18383701909889
MMP1714 -1.29879034985438 -1.31871471694753 1.75201802502111 -1.39657134761587 -1.94584365556618 -1.62628696377979 0.197668602704950 -0.411723817464775 -0.22338840235322 0.507286521190189 0.506217217769917 -0.364721349938231 0.187111067465363 -1.05661344851701 -1.17105583271675 0.391845305427293 0.423280791248124 -1.64096694637504 -1.54129148641724 0.473894370077846 0.50706840538844 -1.93452447989264 -1.97085570954587 0.530232242811337 0.658739697223509 -0.407501002320967 -0.391845305427293 0.409964583406394 0.481687580799588 1.69843746361663 1.66903352265350 -0.709790573993225 -0.701915890277595 1.30632707070069 1.42066678009373 -0.389283996199343 -0.411653605686592 1.13820818757924 -1.09250197366686 0.373747049500694 0.2320169044801 -0.2320169044801 -0.0124838507660960 0.0648268536210848 0.0124838507660961 -1.39682400690933 -0.140510478773397 -0.221395839175054 -0.0366494108058655 0.46865376896355 -0.490672907679145 -2.53179295854641 -2.42935785473193 -1.34545441273913 0.932166590117378 1.81919717090791 1.80862168688482
MMP1715 -1.88913281775895 -1.80561978873108 1.91229965866686 -0.874549687330808 -1.70181316460265 -1.52536691093390 0.720241463905276 -0.311061889672210 -0.373062491325108 -0.421668716905222 -0.223772604510989 0.146897353766485 -0.926843283890195 -1.45481327185670 -1.32325146287219 0.529534545147997 0.397542685412234 -1.53458859010582 -1.58912934915422 0.626591421203123 0.664821191835258 -1.58429688777267 -1.45642360245240 0.685163189083607 0.87991266887987 -0.397542685412234 -0.544884319918442 0.434714899695957 0.422975717388944 1.3886622278408 1.39480457263842 -1.0038430066294 -0.984275573761807 1.01334997565716 0.998669956549298 -0.517863087865674 -0.703055132324743 1.20671288974383 -1.30654272156712 -0.00947760097673404 0.0131372608964920 -0.0106083563188994 0.000394432445288152 0.0603218686327324 0.0190379393592407 -1.68246474312472 0.140027047651109 0.184256876547911 0.210709127073676 -0.737539565000524 -0.487192671827949 -1.51602180606295 -1.54997980563934 -1.67702402079731 1.3450509404063 1.45369858082891 1.55189381216634
MMP1716 -2.08610598383366 -2.13606617591208 2.13336424197477 -1.64891518152748 -1.52092549669361 -1.2448619226067 1.15714179578066 -0.360392217075382 -0.36835550883963 -0.0363685814746834 0.0254056357305309 0.662421233565551 0.0106614355825615 -1.34493358533654 -1.18258977209504 0.856422419825384 0.801036573897167 -1.18053669672182 -1.12708992359393 0.785450736994773 0.755182874177655 -1.48502700358981 -1.18727886936732 0.992546140378663 1.14300488377457 -0.391104482196164 -0.694635358410472 0.477961307617791 0.391104482196164 1.11590621197847 1.15400972842309 -1.28647055183203 -1.27150887578495 1.05253794303668 0.959514078394185 -0.877786296440127 -0.909003915727895 1.17977030683340 -0.966231495435078 0.188382555462930 0.0674158200960624 -0.203023579770403 -0.0173522631957836 0.0260353747869158 0.0173522631957835 -1.48348588336793 -0.220457522805138 -0.167486276887094 -0.291284453980163 -0.969410068218328 -0.68304132776749 -1.38579051313579 -1.42553094732315 -1.27468577498612 1.48952853644541 1.51129059527057 1.64679818666586
[+] Show/hide bicluster #80 motif PSSM #1. bicluster 80 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 0 1
2 0 0.5 0.5 0
3 0 0 1 0
4 0.5 0.333333 0.166667 0
5 0 0 1 0
6 0 0 0.833333 0.166667
7 0 0 0 1
8 0.166667 0 0.833333 0 [+] Show/hide bicluster #80 motif PSSM #2. bicluster 80 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 1 0 0 0
3 0 0 1 0
4 0 0 0 1
5 0 0 0 1
6 0 1 0 0
7 0 0 0 1
8 0 0 1 0 |