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[+] Show/hide bicluster #40 rows and columns.
bicluster 40
Methanococcus maripaludis S2
13x56
[+] Show/hide bicluster #40 rows (genes).
bicluster 40 genes
Methanococcus maripaludis S2
13
[+] Show/hide bicluster #40 rows (short gene names).
bicluster 40 short names
Methanococcus maripaludis S2
13
short_name
[+] Show/hide bicluster #40 rows (long gene names).
bicluster 40 long names
Methanococcus maripaludis S2
13
long_name
[+] Show/hide bicluster #40 rows (NCBI RefSeq gene IDs).
bicluster 40 NCBI RefSeq IDs
Methanococcus maripaludis S2
26
[+] Show/hide bicluster #40 gene upstream sequences.
bicluster 40 upstream sequences
Methanococcus maripaludis S2
13
upstream
[+] Show/hide bicluster #40 columns (arrays; conditions).
bicluster 40 arrays
Methanococcus maripaludis S2
56
[+] Show/hide bicluster #40 ratios.
bicluster 40 ratios
Methanococcus maripaludis S2
13x56
GENES H_vs_Leu_3000070032A.4 H_vs_Leu_3000070032B.4 H_vs_Leu_3000070033A.4 H_vs_Leu_3000070239A.3 H_vs_Leu_3000070239B.3 H_vs_Leu_3000070240A.3 H_vs_Leu_3000070258A.2 H_vs_Leu_3000070259B.2 H_vs_Leu_3000070260B.1 H_vs_Leu_3000070261A.1 H_vs_Leu_3000070261B.1 H_vs_PO4_3000070034A.4 H_vs_PO4_3000070034B.4 H_vs_PO4_3000070035A.4 H_vs_PO4_3000070247A.3 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070250B.2 H_vs_PO4_3000070253A.1 H_vs_PO4_3000070253B.1 H_vs_PO4_3000070254A.1 S2_vs_S40_BR1_3000069793B S2_vs_S40_BR3_3000070265A S2_vs_S40_BR3_3000070265B S2_vs_S40_BR3_3000070266A S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272A S2_vs_S40_BR4_3000070272B S2_vs_S40_BR4_3000070273A S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR4_3000070256A leu_vs_PO4_BR4_3000070256B mma_0334m_0.402 mma_0492m_0.598 mma_0783m_1.23 mma_1444m_1.58 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070036B.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070038B.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_H_vs_slow_H_3000070041A.1 rapid_H_vs_slow_H_3000070041B.1 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000070024B.1
MMP0015 1.33934502249357 1.49623469327719 -1.35934838569485 1.99294286914673 1.82847546451515 -2.79380633512799 0.324339072132268 -1.32039035593748 0.595465962243512 -1.71006900523013 -2.14354565556076 0.308945450306867 0.0681028980603204 -0.277266580615693 -0.210514869721406 -1.41500081033262 -0.215134239015714 -0.428804735844523 0.0975984813682214 -0.188105791509912 -0.735507185597226 -0.711106828446047 -0.000786010185692667 0.000786010185692854 -0.880767579997469 -0.451938573824328 0.747525355431538 0.694947857571986 -0.296466129154329 -0.30182989641852 -0.541186363034061 -0.56051455019743 1.00416985962170 1.02673970737577 -0.5333063685327 -0.463153359819460 -0.620919478502124 -1.16098919222700 0.251327322491302 0.00686291912522962 -0.2857141593714 -0.230422123522288 -0.0866015133339304 -0.0935524020712491 -0.0617418415420007 0.236160342415618 0.394489127937745 -0.0858796594909701 -0.554922926534872 0.434428341818941 0.0642161141227962 -0.100167777317873 0.296794809408839 1.78991988116271 0.064448463399042 0
MMP0212 2.05103829916727 2.40499559657869 -1.52817888069542 0.504256169250969 0.976359598442456 -1.5772479765756 -0.369316713989584 -0.598481745372255 0.688602255462178 -1.97282231015271 -1.60897251065507 0.560449695620265 0.502592899097867 -1.39874092447192 0.305139455820464 -0.268678529077431 -0.0721712429561007 0.0156800222969321 0.820892060426814 0.700811020957379 -0.0319795508362834 -1.59093888295176 0.461140135635362 0.461179778989015 -0.370781486917183 -0.284797341990968 0.625282892629264 0.739597581500333 -1.23634912043834 -1.31371457488721 -0.84870170074374 -1.39171919457711 0.78579385663142 0.671707304991443 -0.438921981161431 -0.993674711173751 -0.750912077822777 -0.952165993618385 -0.051120276216766 0.051120276216766 -2.67439047167978 0.511533083118842 0.117050713712823 -0.451568947086491 -1.00333052297502 0.908589450223152 0.840149849267225 -0.708993023928804 -0.617432961481111 -0.167362493376590 0.357991122013213 0.406543904249813 0.190443292919749 0.83128908732528 -0.0132928575882648 -1.50882474393159
MMP0573 1.56193936797352 1.26807787941515 -1.55969392463277 1.19733189564738 1.75177862679199 -0.517106402238119 -0.205524661771012 0.00741328376608563 1.09596375699116 -0.954934768925216 -0.00780642762794124 0.060220015127844 -0.30026542823584 0.0599062359820812 -0.740021316027341 0.336512346474967 0.175954584769959 -0.98947026639381 -0.0223350960444336 0.0165267310894814 -1.02530668885355 -0.5768870091002 1.04606935691616 0.55335603258187 -0.970185327697673 -0.889339204824991 -0.0150206703235461 -0.823634348704897 -1.26422181761617 0.015020670323546 -0.903664315865653 -0.983294147949265 0.20233745318202 0.4949357160532 -0.287344912670021 -0.214645885241783 -0.724344271245738 -0.88360910154459 -0.162308878945791 0.162308878945791 -0.947835955050973 -1.11718885365159 -1.16717288649732 -1.15822725069678 -0.40018290461071 0.708959699159778 0.936050267677314 -0.671723855181742 -0.781401256376617 1.54624463489002 -0.209284126696110 -1.24852225745883 -0.262694882504605 -0.837237464634472 NA 0.747191746542415
MMP0587 2.36003799528423 2.51229309785839 -0.923345426109708 1.32247062921226 0.443326457658202 -0.428238703409202 0.580142810052766 -0.973796069669266 0.700667248343545 -1.33990565946063 -1.31425225366959 0.529089074843853 0.608037208357302 -0.52504235718912 0.249001078746858 0.624661539988647 0.387278333341870 -0.298997806291401 0.644697924876161 0.331692910407237 0.228121857873911 -1.51419925330995 0.811344251274238 0.632748839949075 -0.887760707711395 -0.660633198466449 0.171705260843663 0.201867748966691 -0.171705260843663 -0.909664427278083 -0.999072881303782 -1.22799371428843 0.953279527382183 0.822013700327528 -0.242827816531758 -0.183858789778701 -0.344865512271332 0.324635770441365 0.00622069193115965 -0.00622069193115964 2.3050299491358 -0.293261415703914 -0.570571631221848 -0.446993016395455 -0.80145080290422 0.579767840769172 0.220451976114468 0.0401864824608916 -0.717838288048586 0.82536527881578 -0.0464080457339116 0.68784407634417 -0.650687245954333 0.863506618684161 -1.85331791473571 -1.64462797232105
MMP0661 0.59686541811883 1.20895561898098 -1.56674383387055 1.10236744351157 -0.296553747267626 -1.39150980088461 0.296161312402313 -1.56662505032443 -0.134084412086234 -0.792889822042552 -1.36256192406523 1.08434989676224 0.452571743846728 -0.380716693636085 0.181428007901355 -0.135329656080546 0.500043930001735 0.0136569051804342 0.178041588740107 0.568404761909692 0.302570996996232 -1.63990289024806 0.0772254705723539 0.561123269739011 -0.814166244471738 -0.783281891870136 0.460197439712888 0.727755645579202 -0.889052534674757 -0.581627670646651 -0.683865999209406 -0.988335970087878 0.914163682782608 1.26549549939104 -0.415249793596951 0.0205031301293523 -0.311575559750814 -1.40969348032190 -1.00839571061172 -0.66866209467675 0.310584873739370 -0.905851422828676 -0.677294900201082 0.507462811252360 -0.00993280608388478 0.316643356153005 0.054143252635272 -1.28135579563681 -1.06812109725895 0 1.00688376517798 -1.29667559885157 0.134806585969875 NA -0.281065143869373 0.325283419942105
MMP0670 2.49648822754748 2.30523605759429 -2.30851965434197 2.22949750330735 2.27131836402956 -1.26022522078968 -0.109505995361373 -0.580393632756353 -0.0771130542286285 -1.35453449822756 -1.06590958639444 0.673286298679028 0.413769920605285 0.147914365539034 0 0.874195512867074 -2.35655794728851 0.0915755199046168 -0.232131396229565 0.030572493576311 -1.99792283661058 -1.36087908336801 0.979050342283369 0.8642819328558 -0.534217518371047 -0.515569203625266 0.284979532920125 0.368074469077591 -0.311014167492752 -0.489145886242774 -1.40695526689260 -1.26297343335019 0.67169670309552 0.773036643707717 0.261657867891785 -0.3794578955513 -0.0237019716905514 -0.289739392058100 0.478914898394753 -0.138069269330673 0.138069269330673 -0.436137832245537 -0.469310483186204 -0.173833524851926 0.147521656197796 0.0242068850120366 0.0918464629184992 0.151312128998198 0.177766462961783 -0.226114197174827 0.553917286855759 0.371064468908496 0.733604081119485 1.55759791138562 0.274270043782237 0.370550734876174
MMP0868 1.19139792890491 1.41068878854573 -1.19203267209615 1.44652786177013 1.59537830561099 -0.843911931035286 2.08740138366748 -1.59838611559323 1.5759228336149 -1.50345725720681 -1.38357746384030 -1.38079413138676 -1.08915863230016 1.30589058564104 -1.20960990438627 -0.209028618192415 -0.328934942841079 0.377286024088429 -0.876293027953517 -0.824598119922504 0.367452102694838 0.216864096068597 1.34064408211329 1.12398850196102 -1.43351623732044 -1.28660019623570 -0.485686151076448 -0.365323724268912 0.72691638500021 0.801202234873721 -0.751551856697363 -0.837417292639406 0.513115114934643 0.702934999368548 -0.888963122984524 -0.718037734340328 -0.595431253574944 0.415577371349443 0.121231344259471 0.0159326787737806 -0.149522062338556 -0.61716310367675 -0.679512529633285 0.249366390708668 0.210331788850368 -0.27856373376848 -0.215994339435398 0.343060705677797 0.297220832911074 1.25200512675483 -0.869572109015293 -0.609321816531296 -0.67513658914348 -0.0915796154826636 0.28133705400733 0.589952075728982
MMP0901 1.51097781222762 1.37936363119031 -1.80444757862103 1.43787641405319 1.40352445001477 -0.933451852482948 0.886807143732815 -0.821765803242597 0.726301020966432 -0.782259354563934 -0.515765393512764 0.223457289476699 0.0838069549313261 -0.0877542683182499 0 0.202498025721269 0.187127536879817 -0.0164988797042768 0.213994808260388 0.335316402466454 -0.54527361401805 -1.11197793954673 1.33956771860580 1.30705189800869 -0.438282311394567 -0.484078272866865 0.342674367778043 0.198198502480997 -0.433675863662016 -0.198198502480997 -1.05187278819527 -1.09103271762851 0.614271345415082 0.712090425773822 -0.580868139395349 -0.073380483909161 -0.287006359078426 -0.293153975365568 -0.174483367447223 0.181293620012458 2.23125792091326 -0.464331821210361 -0.442721826382304 -0.574357448296113 -0.176004236141761 -0.00545221432743911 -0.0691714936116067 0.319619264649308 0.282653445899019 -0.95180441978488 1.33991889683074 1.0730648702986 0.907172110083184 2.83643090656009 NA -0.31197474941928
MMP0954 2.00948352657015 1.60817126060437 -0.809724094027797 0.937503510087552 1.61280041694149 -0.45451596523825 0.739581470953586 -0.569176379923747 0.105041618372640 -1.20569407847943 -1.37892050419330 0.660969736343305 1.13049462633867 -1.44199381291069 0.337749099194015 0.699098450018395 0.354662290788231 -1.33386807107603 1.51163646668067 1.07728260432113 -0.837766804356707 -1.22114040456001 1.32095322373101 0.510753847189058 -0.789438360779511 -0.629275022807735 0.838329644766608 0.675391720162398 -0.349690975203585 -0.847581339936993 -0.255940043291154 -1.43766110004894 0.37228273868549 0.781077998718718 -0.00715046361287928 -0.561893176530082 -0.560028629978804 -0.400638388410822 -0.004061667694393 -0.3293335555537 -1.70409524600311 -0.517248719370388 -0.799941539484329 0.185103096751362 -0.413482041822834 0.502839055024982 0.0534352891401777 -0.420717770605504 -0.866779769679925 0.307571119052957 0.964929636552426 2.30424509605278 0.831231630623338 1.99951952859524 -0.093489172643993 -1.69581029479501
MMP0969 1.69377375403501 1.77394293832329 -0.305642905384733 -0.0362316226778293 -0.118441107265327 -0.664473249477368 0.277333642437447 -0.447709950477421 0.201827805698333 -0.848534725816002 -0.7688254606087 1.24726884577830 0.831225311977037 -0.356127700332162 -0.375012351684237 0.179686661000711 0.365821310177266 -0.60561220880629 0.0302642366008696 -0.106687466240361 -0.291964614113787 -0.756940851053839 1.27383573321444 0.74868992042891 -0.812618619159092 -0.936622748184253 0.732360904212564 0.624596898168274 -0.477292358507882 -0.647608688720046 -1.17753915073411 -0.402808708975234 0.733254467511705 0.805994141060611 -0.65807838627778 -0.640672077173103 -0.371227563289996 -0.3444309548533 0.0819451845196003 -0.0364835632273519 0.147240152264302 -0.690839243567454 -0.648814739931907 0.383568564332652 -0.0302642366008696 0.495166719577437 0.598301383030796 -0.476384182781944 -0.563050556938692 1.69426520833465 -1.09934230257932 -0.732639469108785 -0.447465614746363 -0.152121921779479 0.7405070852751 0.498780656068015
MMP1183 1.24462644695787 1.17858010028659 -0.477262840420764 1.39574084152412 1.15119333267365 -0.85619051315091 0.981108380546165 -1.98711846129907 1.12922191463492 -1.68429523769540 -1.55170711500894 -0.592123307701349 -1.21823444238240 0.581240345016828 0.248436513479800 0.0072782787703561 -0.264341783263849 -0.493242995188943 0.232087137747111 0.039172247543874 0.63029013958235 -0.643059386159763 1.71170205517507 1.65401929252926 -1.33901311401008 -1.21841320296809 0.46883484151855 0.523839986923536 -0.517971285603284 -0.512985068815724 -0.72618586495438 -0.85701319399049 0.755174643492531 0.582973379625591 -0.582973379625591 -0.739069658717837 -0.798539010869651 0.05805101382781 0.112468558085612 -0.0580510138278100 1.55689946110247 0.0792633956711048 -0.319745923497682 0.959371757155442 0.811474842579896 -0.534861313649414 -0.841328608921346 0.797397922781858 0.757553882382702 -1.08229621901219 1.00449706921744 1.20734041368700 0.341757549148638 0.46886225606308 -0.71643743046586 -2.5588590853127
MMP1437 0.708125159953831 0.714125638195192 -0.494241473637028 1.46391595595699 1.14469873016257 -0.870735582129075 0.999295187360695 -0.104537607626922 1.38263851171595 -1.34346951678875 -1.12867140537982 0 -0.264463648662199 0.0929612317243505 0.536121669162136 0.496534416080764 0.0515120311577994 -0.569379070407852 0.299583301114747 0.188955519833368 0.73924239074754 -2.6188976298096 0.59773138998456 0.00783648877912811 0.606916155267267 0.0458183747538192 -0.227033320075811 -0.514751021301535 0.798866851087475 0.437067597789074 -0.622276303224367 -0.712021056341392 0.687331083803907 0.716199409708326 -0.805734530092878 -0.831986486930278 -1.30037934866589 0.0113846842519378 0.0367466046151655 -0.0113846842519378 -2.12318725316337 -0.484406607045039 -0.688069981700016 -0.360168765892675 -0.966818406493318 0.280962012292349 0.457093754673438 -0.854753043751247 -0.730359195553577 0.322682338770209 -1.71875059722024 -1.78532637531667 -2.23265518625293 -1.07859724825861 -0.0677083589289099 0.324147765097725
MMP1543 1.69450651015202 1.83265840699896 -1.01703142352333 1.33359031572314 1.51450437750521 -1.23315822565725 0.0939381110858362 -0.623507851244775 1.17890515577602 -0.849235102338295 -0.720482142852237 0.605983322717388 0.614661607600444 -0.891447266599965 0.246765014474760 -0.0276863943213894 0.00221592160906130 -0.231634740732446 0.675789990675245 0.839980874718307 -0.198465474249258 -1.67426210712452 0.805602804521429 0.505783110507035 -0.476532954118683 -0.388969594194311 0.983398006538262 0.90978141214007 -0.433267226996796 -0.413443263315233 -0.59506344526723 -0.709582653772097 1.00405597596820 0.94600176219548 -0.464368873396073 -0.649479452748663 -0.823426485986964 -0.239825523064277 -0.0187923481448156 0.0481195987577737 -2.47698065224730 -1.09946839988747 -1.17482167593434 -1.50031817378206 -1.57939411355269 1.98479629772264 2.14000560409636 -1.66384263125084 -2.03573640975033 0.776210402852211 -0.194721750033106 -0.165101864414421 -0.352144892801579 0.555046404804112 0.00150000950696288 -0.0178994659026083
[+] Show/hide bicluster #40 motif PSSM #1. bicluster 40 motif PSSM #1 Methanococcus maripaludis S2 19x4
POSITION A C G T
1 0 0 1 0
2 0 0 0 1
3 0 0 1 0
4 0 0.5 0.5 0
5 1 0 0 0
6 0.5 0 0 0.5
7 0 0 1 0
8 0.5 0.5 0 0
9 0 1 0 0
10 0 1 0 0
11 0 0 0 1
12 0 0.5 0.5 0
13 1 0 0 0
14 1 0 0 0
15 1 0 0 0
16 0.5 0 0.5 0
17 0 0.5 0.5 0
18 0 0.5 0.5 0
19 0 1 0 0 [+] Show/hide bicluster #40 motif PSSM #2. bicluster 40 motif PSSM #2 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 1 0 0
2 0 0 0 1
3 1 0 0 0
4 0 1 0 0
5 0 0 1 0
6 0 1 0 0
7 0 0 1 0 |