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[+] Show/hide bicluster #25 rows and columns.
bicluster 25
Methanococcus maripaludis S2
11x57
[+] Show/hide bicluster #25 rows (genes).
bicluster 25 genes
Methanococcus maripaludis S2
11
[+] Show/hide bicluster #25 rows (short gene names).
bicluster 25 short names
Methanococcus maripaludis S2
11
short_name
[+] Show/hide bicluster #25 rows (long gene names).
bicluster 25 long names
Methanococcus maripaludis S2
11
long_name
[+] Show/hide bicluster #25 rows (NCBI RefSeq gene IDs).
bicluster 25 NCBI RefSeq IDs
Methanococcus maripaludis S2
22
[+] Show/hide bicluster #25 gene upstream sequences.
bicluster 25 upstream sequences
Methanococcus maripaludis S2
11
upstream
[+] Show/hide bicluster #25 columns (arrays; conditions).
bicluster 25 arrays
Methanococcus maripaludis S2
57
[+] Show/hide bicluster #25 ratios.
bicluster 25 ratios
Methanococcus maripaludis S2
11x57
GENES H_vs_Leu_3000070259A.2 H_vs_Leu_3000070259B.2 H_vs_Leu_3000070260B.1 H_vs_PO4_3000070035A.4 H_vs_PO4_3000070035B.4 H_vs_PO4_3000070247A.3 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070254A.1 H_vs_PO4_3000070254B.1 S2_vs_S40_BR1_3000069792A S2_vs_S40_BR1_3000069792B S2_vs_S40_BR1_3000069793A S2_vs_S40_BR1_3000069793B S2_vs_S40_BR2_3000070263A S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070273A leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR4_3000070257A leu_vs_PO4_BR4_3000070257B mma_0492m_0.598 mma_0649m_0.885 mma_0783m_1.23 mma_0849m_1.4 mma_1444m_1.58 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070036B.3 rapid_H_vs_slow_H_3000070037A.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_H_vs_slow_H_3000070042A.1 rapid_PO4_vs_slow_PO4_3000069786A.2 rapid_PO4_vs_slow_PO4_3000069786Alow.2 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069787Blow.2 rapid_PO4_vs_slow_PO4_3000069789A.3 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000069790Alow.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023A.1 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024A.1 rapid_PO4_vs_slow_PO4_3000070024B.1
MMP0024 0.173678125258461 0.299141804896924 2.11563703904330 0.0374602863748963 -0.314815047001105 -0.239536872527036 0.611668728536389 -1.11243513425481 -1.12587148246378 0.711364757972285 1.02251958691180 -0.61252300005204 -0.515935517616915 -1.10070854317708 -0.39578065521562 0.457176429633754 -0.794629063803078 1.56963312255121 1.65272424236729 -0.425776095959779 -0.343887563230447 0.447486451892424 0.343887563230447 1.28136755079622 1.3008428990538 -0.00613974362705408 0.0637417020190523 0.00613974362705408 -0.0797422460168296 -0.634775069902518 1.00555267438474 1.11130362933247 -0.291981299803955 -0.285993202252926 0.716867550823688 0.829096762252943 0.941613807790098 -0.00991005098639608 -0.256778770780356 0.0220099152705387 -0.567194843500609 -0.222415304122256 -0.665346360729053 -0.0968002940672097 -0.998512724713975 -0.258064222352193 -0.0822695383174654 NA NA 0.410189096743233 1.53263245712577 0.280693715755666 -0.467196455572555 0.131352835730145 -0.425237423894485 0.685090731086352 0.343036568542444
MMP0083 -0.185943456792443 -0.368291244579754 1.19343443603154 -0.305050727009843 -0.0569771236270955 0.0367928483780434 0.0489229294660087 0.0161396277238079 0.0796290237426283 1.42085054901569 1.50142253412214 -1.12967303849554 -1.15733623508947 -0.993115933757798 -0.547002098033511 -1.10091906175548 -1.62724029124850 0.810897824244684 0.89191258659246 -1.34980206213049 -1.36755909914293 0.736221312039121 0.756841804657089 0.743433547431512 0.802705146042238 -0.0238275013982100 0.02382750139821 0.156580723473952 0.119956173404370 -2.71611972086612 0.391576531906848 0.435135439699224 -0.97731633554878 -0.891468111082712 1.06377025277835 0.759508419576707 0.663536312317888 1.36090404563319 1.53454784961303 1.37581570533768 1.57486047677686 -1.33414684155448 -1.19743459788734 -1.40461166715258 -1.27177341894109 -0.578016067736519 -0.70814618932007 0.416570326296653 0.423303676030968 0.469793181232432 0.575904424562084 -1.28059145368783 -1.16858096721266 -1.40794440519629 -1.20346303285765 1.03599913463381 1.03395563347220
MMP0697 0.122724667460716 0.292913617299 0.152019698894476 -0.475230474426243 -0.97844773708546 0.731237646725431 0.423344218865311 -0.498267297060696 -0.613159252848104 1.85760378428124 1.81621318537278 -1.19540370199285 -1.33580654063042 -0.548364284669487 -0.274255281101275 -0.691524609595932 -1.57220397041826 1.42264746742911 1.16319059252309 -1.52626255322364 -1.23749981490586 0.686408686939144 0.79636985459523 0.896931004580293 0.665384552856597 -0.033855445277605 0.0389823795494093 0.0338554452776049 -0.490506177142115 -2.00418932318313 -1.46615914191583 -1.55983126594110 0.819330747293214 -0.463929238349443 0.407219651455779 -0.0620965317411184 0.469414807809575 0.527803211981063 0.928671950038767 0.705198503132068 1.76724686540455 -2.09810421515641 -1.99912291929182 -2.26844185601072 -2.46306683786623 -1.34782459702396 -1.30720147567253 0.160501112536396 0.747822384803466 -0.171400318589236 0.0640909421414014 -1.11140882980367 -1.47701666120406 -1.45028362855178 -1.46990523040005 0.698761763627577 0.371589429898981
MMP0947 -0.59703653907458 -0.620602146880129 0.820455678424147 -0.330158722626413 -0.256904613750310 0.188324502867028 0.333863394927357 -0.276369424878691 -0.415530893796815 0.957211459386694 0.989974949413676 0.270377395435677 0.0499429133148182 -0.483069012549792 -1.98633935196205 -1.16500242832754 -1.52120930285416 1.44015584845299 1.49624468177067 -1.09448079248913 -0.82223794480009 0.416922443358425 0.289882687129709 1.35084911657229 0.84061983034186 -0.121139355402944 0.121139355402944 0.228157128645152 0.200424382955995 -2.53533441648451 -0.97550823466079 -0.892785705615784 1.27979665145460 -0.0301556351784179 0.684732557227199 0.949912206635193 0.503787375158465 0.724801525463058 1.00290194820690 0.895052023490301 1.47758574416020 -0.591007423872374 -0.451073242099870 -0.742139477255528 -0.72556569591232 -0.841595736629474 -1.44241388492862 0.542373028089442 0.675460396658711 0.95180171492132 0.872161699820152 -0.754994807355193 -1.02751870327658 -0.555508070723867 -0.59879361581318 1.30741664975295 1.20259469216417
MMP1021 -0.883674580910617 -1.32329182817354 -0.217857007836695 -0.299091775501029 -0.0711193518726523 -0.648764191974223 0 -0.214802112637184 -0.322232522687074 1.01601241828561 1.28733046586012 -1.62093450031375 -1.78441608301763 -0.165143408041568 -0.902038825602277 -0.960929320566328 -1.35120504111953 1.26446417791028 1.17743502038151 -0.78349745929069 -0.81994598168462 0.390774368944324 0.270416718505629 -0.718389787239838 -0.525579775068042 0.0440079784012509 -0.0440079784012509 0.533484472864144 -0.64359423106809 1.16917523026017 -1.85030983117880 -1.86537521938469 0.879864834063428 -1.39048155680688 0.716798311134574 1.07645132104456 0.181768453385372 0.783964190112886 1.04670685535905 0.356254577676142 1.55868954729793 0.225690973949408 0.399591059738795 0.219614320746937 0.906884804812604 -0.959935585559443 -2.52749442900315 1.38959715469205 1.74676688537194 1.01963012323618 2.01928757633213 -0.208874744585472 0.670336630404217 0.0626461156874926 0.954966452893392 0.383302400312836 0.148211119057649
MMP1106 -0.0369325507612312 0.476167622392202 0.993002707503276 0.0451429747253777 -0.126353181411126 0.648768399251857 0.275314705938412 -0.300140905146527 -0.175807908040464 0.556501751888039 1.39248706559247 -1.14949330987763 -1.48043871490901 -0.833815005428361 0.904166874907757 -0.118152737117441 -1.3888687790354 1.07538978193858 1.3500365957099 -1.02296709919326 -0.860827464675947 0.556613673080485 0.680376375226804 0.814343230815717 0.599148737513055 0.388625315617232 0.249623575317164 -0.179156776462199 0.0468705404916511 -2.23428508771536 -1.21318861332791 -1.20952090598545 1.36168438412385 -0.670982590393735 1.02749097231926 0.570948209320882 0.531817229331953 0.708637659629463 NA NA NA -0.850447553236377 -3.19359977205693 -0.334975388499504 NA 0.108593823932620 NA 0 -0.00727787260439616 NA NA -0.223147421801362 NA -0.59733185702306 1.26185988024988 0.526200416494984 0.252238160024588
MMP1207 -0.413016026135594 -0.417228933726701 1.05985566531553 -0.384996897023821 -0.317701266079091 -0.176476525475810 -0.0159476550123284 0.0111749705364239 -0.00498163040117677 0.97475341696082 1.05252650423044 -1.11846768064443 -1.07955549648251 -0.654553669388988 -0.217287982317034 -0.26061514378778 -1.10880785407798 1.38586601209318 1.44129836825274 -1.27533570850752 -1.26451542145268 0.77431857896565 0.836024632122203 1.03539564304145 0.89469950187173 -0.308487967607433 0.308487967607433 0.369414070827786 0.316851787694487 -1.31740981655702 -1.57073432378509 -1.50782013630896 1.53338427630340 -2.85868814319980 1.07750673129610 1.02415312734241 1.24725043591891 0.237997772609897 0.418091146018201 0.266974019868969 0.525198065884883 -0.81749593437623 -0.675117046545972 -0.899752124373917 -0.878557589960724 0.180462571419338 0.0942657530380375 -0.548019255083163 -0.597154387326752 -0.733718115751173 -0.848331186153095 -0.49631900744704 -0.592014940847759 -0.843701322512815 -0.565923697083509 0.531116674233208 0.40935480464659
MMP1255 -0.451776868023508 -0.524576363355948 0.845612031905371 -0.153514278317387 -0.39542338932477 0.239595929320699 0.411645327866262 0.175281822856256 0 1.59628770402821 1.60864646069502 -0.994069617856101 -1.33756044299912 -0.980006639530765 -0.650832573319108 -0.0785658765180417 -1.5683037137232 1.36428013626343 1.08889050325141 -0.822149793548217 -0.650742745817916 0.535151731232123 0.493261379849442 0.890192684189644 0.79916525950637 -0.0977469107669414 0.0977469107669415 0.275066481512401 0.185562317231359 -1.58377337235667 -1.35037362665618 -1.30212403654896 1.09690582516472 -0.50390057719128 0.78424416410444 0.940831670280834 0.638940107495387 0.56696574485656 0.508299172569867 0.631930978781267 0.267509841478856 -1.32588918083523 -1.58258110691762 -1.52768180017753 -2.26253031010509 -0.443047228503221 -0.63840217460874 0.187052905033736 0.149848897926197 -0.114494117965165 -0.0779253784979047 -0.577375271425014 -1.18038528352842 -1.05499255787766 -1.13433832964256 0.619613045257459 0.453739871605004
MMP1445 -1.07689514863885 -1.05049664036313 1.06533798810263 -0.488642213827803 -0.585223289441233 0.449351822526143 0.346373168810666 -0.8818699064451 -0.639525492580177 2.22383653597394 1.55437555249737 -1.15945660170824 -0.929772952090067 0.477010420231109 -0.0137746175277624 -0.226131230016514 -1.31887488362091 1.60102094478972 2.01519331938015 -0.729864412833723 -0.584916898184732 0.704375854087055 0.69126823954779 0.760601674466979 0.83941351911318 -0.262606523453593 0.288858815196487 0.00275899881374364 -0.00275899881374355 0.540011313271811 -1.15862840899465 -1.31344194552918 1.44409260094786 -0.205818192713955 0.47571105892162 0.931741645203084 0.804487105420735 0.160190794266769 0.171326033348035 -0.00524074389948474 0.105516107499193 -0.204897029741734 -0.256143496668063 -0.278869798191373 -0.227486178249739 1.00767035008955 2.17722130807074 -0.852105542780422 -0.99428155730109 -0.314047146528493 -0.761563438629892 -0.782502398625727 -0.205418550134845 -0.248057133099914 -1.24777304773982 0.729422554310598 1.05012544981761
MMP1592 -1.29987816275864 -1.05780479941935 0.667353783179953 -0.615675614961675 -0.727105424809058 0.66937060100572 0.705889896176949 0.127044929147157 0.236323663171570 0.942210264178873 1.28002365191989 -1.00196194099106 -1.19015897168652 -0.514052437473487 -1.26507871109246 -0.715587799048541 -1.28994567021453 1.210384205589 1.41904415090582 -0.932543448994374 -0.810086964062134 0.891332605873752 0.76665406258432 1.01421437743107 0.74815702237921 0.0224874512753887 -0.406633987348191 -0.417624095114358 -0.392769543704718 1.29581824492164 -1.65383963025811 -1.56042125882009 1.55692885683435 -0.617277560952605 1.17082920489749 1.11337319016735 0.564727277005936 0.733211499015278 0.809002228976072 0.675617889662093 0.794228942178255 -0.634866064014679 -0.616793515920927 -0.938978840908702 -0.970718185277538 -0.393180243587923 -0.510463566176704 0.0518189282591231 0.136635864461736 -0.0113189663715899 -0.00948554711203135 -0.392340217137684 -0.51951643453057 -0.801671504954689 -0.733068224919545 0.167348107346761 0.00766339411380124
MMP1705 -0.990842349201224 -0.908846511032705 0.363299647105532 -0.757057840700503 -0.27804283441743 0.278828716760419 1.34321563224052 -0.909876956381861 -1.24645992182997 1.53822463833932 1.44324443715468 -0.893634863552573 -1.06563064074236 0.0447148956184728 -0.0447148956184727 0.312877089348094 -0.722242738161978 1.82418407597836 2.03518928716642 -0.667196047413656 0.0280691372388424 0.999823341777624 1.08608190478387 -0.213107270720105 0.364940480650248 0.160961407537862 0.215135526446783 -0.0329635740479706 0.0329635740479705 -0.96677847117293 -1.17668925488331 -1.19107534836012 1.59095772702401 -0.350061359396081 1.19537470229201 1.35147913356156 0.0314087734102014 1.21972243740464 1.34094392795975 1.3089087770397 1.45956642480862 -0.444629115476606 -0.33498937107362 -0.175832375940514 0.0706676329522064 -0.124777367525578 -0.396727193912526 -0.0618448428783428 -0.396447746108375 0.0321005823695681 -0.0314087734102014 -0.326651185850087 -0.150903285144173 -0.0453412052219129 -0.0433487860648087 0.156125122194607 0.971304893218745
[+] Show/hide bicluster #25 motif PSSM #1. bicluster 25 motif PSSM #1 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0 0.181818 0 0.818182
2 0.454545 0.090909 0.363636 0.090909
3 0.272727 0.181818 0.090909 0.454545
4 0 0.090909 0 0.909091
5 0 0 0 1
6 0.272727 0 0.727273 0
7 0.272727 0.181818 0.090909 0.454545
8 0.909091 0 0.090909 0
9 0.272727 0.090909 0.090909 0.545455
10 0.545455 0 0.272727 0.181818
11 0.727273 0 0.090909 0.181818
12 0.727273 0 0.272727 0
13 0.181818 0 0 0.818182
14 0.909091 0 0.090909 0
15 0.727273 0.272727 0 0
16 0.545455 0 0 0.454545
17 0 0.272727 0 0.727273
18 0 0 0.636364 0.363636
19 0 0 0.454545 0.545455
20 0.818182 0 0 0.181818 [+] Show/hide bicluster #25 motif PSSM #2. bicluster 25 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 1 0 0 0
4 1 0 0 0
5 0 0 0.5 0.5
6 1 0 0 0
7 0 1 0 0
8 0.5 0 0 0.5
9 0 0 1 0
10 0 1 0 0
11 0 0 1 0 |