|
[+] Show/hide bicluster #114 rows and columns.
bicluster 114
Methanococcus maripaludis S2
19x40
[+] Show/hide bicluster #114 rows (genes).
bicluster 114 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #114 rows (short gene names).
bicluster 114 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #114 rows (long gene names).
bicluster 114 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #114 rows (NCBI RefSeq gene IDs).
bicluster 114 NCBI RefSeq IDs
Methanococcus maripaludis S2
32
[+] Show/hide bicluster #114 gene upstream sequences.
bicluster 114 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #114 columns (arrays; conditions).
bicluster 114 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #114 ratios.
bicluster 114 ratios
Methanococcus maripaludis S2
19x40
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0058 -0.544068173313116 0.305917335884243 -2.40037572723392 -0.895253123566555 -0.920490527366551 -1.12343888384427 -1.34430987793788 -1.17869306121701 -0.572179387800636 -0.979709949097639 -1.38437275415971 -0.607962300428179 0.385300948360534 0.373683834339613 0.604089929087872 0.642813642490941 -1.27013779962065 -0.265257436811021 0.209108052376571 0.230406094748259 0.51308920259066 0.298172593203629 0.511153016920507 0.509216831250354 -1.62833214859904 0.524706316611581 0.406598990732222 0.511153016920507 0.733814368988152 0.396918062381454 0.547940544653422 -0.0116171140209206 -0.540195801972809 -1.24883975724897 -1.94780278417436 -2.42604064470226 -2.44346631573364 -2.34472084655581 -1.86067442901745 -1.32822336972526
MMP0372 -0.78332907177682 0.528224663856862 -2.4607283890366 -1.89935065611017 -1.8932114690861 -1.97293413607502 -2.08806017405859 -1.92557778751403 -1.01218380686388 -1.74465472196107 -1.95363855895764 -0.405716897341628 0.242853631268434 0.237088559903012 0.355272522894179 0.382656611879937 -0.926014588071034 -0.0151333123342348 0.0972855792915094 0.172231507042005 0.325005898225709 0.18087911409014 0.250059970475213 0.245736166951146 -1.65961991932108 0.355272522894179 0.25438377399928 0.159260096469804 0.0353110621132145 0.0583713475749056 0.381215344038581 -0.193850524662341 -0.715589483233102 -1.43045833254553 -2.00552420124645 -2.11794309287219 -2.05308604001119 -2.02570195102543 -2.09200027172779 -2.11794309287219
MMP0817 -0.449388613187586 -0.527835503270207 -2.01016912169878 -1.74112831521861 -1.67888627318456 -1.74784168576355 -1.72800519721343 -1.63094809364244 -1.22949535589975 -1.00524086291587 -1.07248105441526 -0.908863255100081 0.570420957886487 0.664557225985632 0.794554929551119 0.841623063600692 -1.79867512260867 -0.736280096918314 0.303701531605576 0.456112632337525 0.67800526428551 0.572662297603134 0.718349379185144 0.686970623152096 -1.54988641406093 0.3193909096221 0.368700383388319 0.406803158571307 0.153531770590273 0.478526029503988 0.310425550755515 -0.164738469173504 -0.675763924568864 -1.34816583956276 -1.70453885450952 -1.9891889985236 -1.9936716779569 -2.03625713257318 -1.9936716779569 -1.74936564884245
MMP0822 0.323351739225946 -0.589626898503617 -1.14346969957075 -1.19970739991629 -0.813112933846834 -1.24283885917589 -0.895245389243624 -1.22989147637293 0.00384291707019765 -0.410197570857345 0.138645078413607 0.254746408067077 0.201973076406409 0.497503733706152 0.814143723670163 0.724429059847026 -1.1806882131031 -0.257154909041406 0.0489304145904705 0.539722399034687 0.903858387493299 0.951354385987901 1.32076770761258 1.68490369607119 -0.478802902016214 0.888026387995099 1.44214637043212 0.223082409070676 1.23633037695551 0.903858387493299 0.993573051316435 -0.837661557308759 -1.22818421159771 -1.43400020507431 -1.73480819554012 -1.95117885534886 -1.72953086237406 -2.08311218450053 -1.81924552619719 -1.32317620858691
MMP0824 0.248704038542177 -0.548164003317451 -1.29486606015018 -0.959261592313275 -0.967970654503426 -1.16896663988043 -0.929543824933648 -0.815791252022891 -0.241069550368677 0.0659827041030266 -0.243628445918867 -0.177645741815841 0.38574503937154 0.624297892667098 0.837472782846107 1.02526970990857 -1.21814222959434 -0.603995522173859 0.456803336097876 0.634449077913717 0.77656567136639 0.741036523003222 1.23844460008758 1.50745100912299 -0.695356189393434 1.01511852466195 1.2485957853342 0.944060227935611 1.20291545172441 1.01511852466195 0.974513783675469 -0.345140298385062 -0.862850745962655 -1.33488085993046 -1.61911404683581 -1.7713818255351 -1.73585267717193 -2.0860685681803 -1.78660860340503 -1.17246189598455
MMP1378 -0.957813919219349 -1.08992618393926 -1.39792332239384 -1.295106812492 -0.510180524400658 -0.546148756803287 -0.897994115230258 -0.723241136637501 -0.915715048257631 0.557591470214915 -0.763531176984187 0.0835415791611197 1.04718398064752 1.1443253517651 1.52900518139073 1.66500310095534 -0.950042609529942 -0.775188141518296 -0.402165276426785 -0.200111224502217 0.409936586116192 0.289481285930391 0.833472964188845 1.21815279381447 -0.825701654499439 0.266167356862172 0.619761947730167 0.22731080841514 0.378851347358566 1.62614655250831 0.312795214998611 -0.0835415791611196 -1.05106963549223 -1.52123387170132 -1.65723179126593 -1.64946048157653 -1.78545840114114 -1.64946048157653 -1.22203844865917 -0.821815999654735
MMP1382 -0.624525983210634 -0.661067397121894 -2.65873624290151 -1.83750663768866 -1.66765568630373 -1.77165626921453 -1.74413111533023 -1.57183014851316 -1.04890221668759 -0.903569507623896 -1.14108869804709 -0.488326167723208 0.390328739506646 0.413582366541085 0.591306516018579 0.634491823368251 -1.32213479424379 -0.287348391211276 0.21758751010796 0.249146003940413 0.418565286619893 0.280704497772865 0.413582366541085 0.435175020215921 -1.53806133099215 0.250806977300015 0.182707069556303 0.186029016275508 0.212604590029152 0.378701925989427 0.274060604334454 -0.303958124807303 -0.739133145023224 -1.3271177143226 -1.89683157666634 -2.36688703743392 -2.4133942915028 -2.44661375869485 -2.21739943506967 -1.70249769359282
MMP1383 -0.63014800464302 -0.677606850180988 -2.54525504999275 -1.78611085350728 -1.63980614121725 -1.713196607179 -1.70785238435122 -1.54043534623659 -0.900424987453986 -0.953571248309173 -1.13637569038135 -0.616086124483622 0.415704332212202 0.454374502650546 0.623117064563322 0.668818175081365 -1.69885089675726 -0.370003221694158 0.231142155120104 0.229384420100179 0.480740527949417 0.306724760976868 0.428008477351675 0.447343562570847 -1.59690226560163 0.273327795598298 0.192471984681759 0.234657625159953 0.181925574562211 0.394611511973105 0.29266288081747 -0.252234975359201 -0.716277020619333 -1.29105637213472 -1.83068102325162 -2.30351174361138 -2.40370263974709 -2.43358413508581 -2.18925896731627 -1.69709316173734
MMP1384 -0.626173098267464 -0.696927120670567 -2.48773171464018 -1.76723698098852 -1.6060561711691 -1.69386164056837 -1.68547512737822 -1.51332528785749 -0.823075254351559 -1.00470711812407 -1.0807676922074 -0.681007465629869 0.459901145620171 0.481127352341102 0.652705856668628 0.691620568990335 -1.7830013645582 -0.447519191699628 0.205186664969 0.245870227850784 0.463438846740327 0.295398043532956 0.426292984978697 0.459901145620171 -1.57250814790897 0.300704595213189 0.229950572810086 0.237025975050396 0.189267009928301 0.399760226577534 0.323699652494197 -0.166271952647293 -0.640323902748085 -1.23465769093415 -1.77592596231789 -2.27651067081985 -2.41624986506598 -2.45162687626753 -2.20045009673651 -1.68571458375394
MMP1691 -0.0257768022251719 -0.346145629880879 -2.14271905186694 -1.05582210545701 -1.10614859050782 -1.14527909826735 -1.05255199036112 -0.898468691534341 -0.450962013841911 -0.283544824476891 -0.45661763941733 -0.401381634649105 0.2614504225696 0.394016834013341 0.788033668026683 0.883776076291607 -1.1673209007685 -0.872728875337962 0.279862424159009 0.272497623523246 0.681244058808114 0.452935239099449 0.817492870569737 0.924282479788306 -0.821175270887618 0.765939266119393 0.567089648953781 0.835904872159145 0.850634473430672 0.570772049271663 0.769621666437274 0.0331416028609353 -0.471347240688857 -1.09367289441086 -1.7307281494044 -2.43774901043768 -2.63291622728541 -2.4340666101198 -1.67180974431829 -0.950059282013478
MMP1692 0.0144619062859428 -0.267545266289941 -2.02417960779254 -1.0366499025583 -1.08851058773781 -1.07169531713482 -0.961226079150388 -0.924276020669578 -0.412144979118758 -0.332623844576683 -0.397702422863426 -0.354316704005598 0.300084555433312 0.390471469720454 0.83879056458468 0.954485814872222 -1.13164416687502 -0.715864361154167 0.256698836575484 0.245852406861027 0.697786978296738 0.466396477721654 0.824328658298737 0.932792955443308 -0.762865556583481 0.762865556583481 0.611015540581082 0.842406041156166 0.929177478871822 0.571245298294739 0.777327462869423 -0.0144619062859428 -0.527859579436911 -1.17502988573285 -1.77158352002799 -2.46937049832473 -2.61760503775564 -2.42960025603838 -1.6414263634545 -0.940023908586279
MMP1693 -0.0670683094670726 -0.369651818981337 -1.92666374361509 -1.01006351245186 -0.961519652001635 -1.11845670017616 -0.985309358447442 -0.839302715937203 -0.171851433856061 -0.220139967221348 -0.334053759038483 -0.27353705713563 0.292472095955759 0.402826081778609 0.837122413081435 0.922557756944286 -1.16704836170128 -0.611718626592749 0.263993648001476 0.352988797858612 0.691170367315731 0.48826142564146 0.801524353138581 1.02579213077856 -0.693594164461314 0.701849785298588 0.587935993481453 0.751687069218584 1.02579213077856 0.570136963510025 0.762366487201441 -0.0991065634156418 -0.615278432587034 -1.31656021346127 -1.85409091859838 -2.52689425151833 -2.7048845512326 -2.40942065370691 -1.65830158891268 -0.957019808038439
MMP1694 -0.0444138395749134 -0.335768627186346 -2.07767747176483 -1.01985114615033 -1.13033998072071 -1.09605956369903 -0.972949545296542 -0.924176156928384 -0.456550607136385 -0.197197447712616 -0.342874841518332 -0.339321734352339 0.335768627186346 0.381959020344256 0.822544308927397 0.914925095243218 -1.08547423921089 -0.484999128158055 0.264706483866484 0.28247201969645 0.751482165607536 0.477892913826069 0.818991201761404 0.971774809899107 -0.59514545030384 0.776353915769488 0.598698557469834 0.719504201113598 0.954009274069141 0.627123414797778 0.79056634443346 -0.111922875728782 -0.676866915121681 -1.2844482405065 -1.85649849423138 -2.49605778411014 -2.63107585641787 -2.40367699779432 -1.61133409977786 -0.939796845405169
MMP1695 -0.0155066340017855 -0.215369916691466 -1.94332902321112 -1.04739152402066 -1.10185108107883 -1.13447494734596 -0.985152030239892 -0.896357022558583 -0.50253663082966 -0.101654600678372 -0.360098500708131 -0.34976074470694 0.349760744706941 0.52894851539424 0.852864870098205 0.952796511443045 -0.959688348777172 -0.33942298870575 0.284288290032735 0.256720940696227 0.732257716750984 0.522056678060113 0.821851602094634 0.925229162106537 -0.62888015673908 0.79773017142519 0.653001587408524 0.777054659422809 0.963134267444235 0.659893424742651 0.825297520761697 -0.180910730020831 -0.790838334091063 -1.31461797148471 -1.88319455155018 -2.52413542362398 -2.61372930896763 -2.35183949027081 -1.5420486035109 -0.876986300767649
MMP1696 -0.0580463601068747 -0.237160842722374 -2.10248674781855 -1.11302625782267 -1.21602121159355 -1.17123862388558 -1.02231281594496 -1.03149898412536 -0.535795205477313 -0.117751187645374 -0.403007585884873 -0.363204367525873 0.286914865671124 0.333351953756624 0.761236551115872 0.787772030021872 -0.940351033731371 -0.339985823483123 0.220576168406124 0.286914865671124 0.684947049261122 0.499198696919123 0.771187355705622 0.907181685098871 -0.645143830902122 0.738018007073122 0.598706742816622 0.711482528167122 1.06307762367162 0.658411570355122 0.747968811662872 -0.333351953756623 -0.820941378654371 -1.41467271917612 -1.95201616702262 -2.58555072590336 -2.63198781398886 -2.32682980656987 -1.55066704856937 -0.883963141056121
MMP1697 -0.0739240437385027 -0.258734153084759 -1.9440803252477 -1.10502770449025 -1.25149524028934 -1.18812375298899 -1.05905429800689 -0.904949817097263 -0.59800525212212 -0.0436823894818424 -0.383060953917696 -0.329298013016966 0.312497093985489 0.362899851079922 0.793003378285756 0.84340613538019 -0.745960804997618 -0.34945911585474 0.248653601665873 0.211691579796621 0.732520069772436 0.473785916687676 0.749320988803914 0.947571833375353 -0.608193268939499 0.776202459254278 0.594752533714317 0.692197864096889 1.16262359697827 0.702278415515776 0.799723745898347 -0.346098932048444 -0.93413109815017 -1.47176050715746 -1.95226679145773 -2.55709987659093 -2.54701932517205 -2.30172590731247 -1.48520124238265 -0.863567238217963
Unanno_20 -1.87286420092605 -0.993133493702069 -1.76217315686139 -0.806060611056402 -0.776009140682658 -0.964283402138929 -1.26531531880326 -1.64993273519891 -0.34432316235939 -0.378009288260303 -0.687289615018733 -0.429556009386708 0.687289615018733 0.841929778397947 1.15121010515638 1.09622693595488 -0.378009288260303 -0.360827047884835 0.0274915846007493 0.134021474928653 0.408937320936146 0.199313988355432 0.642615790042515 0.969078357176413 -0.257733605632025 -0.0446738249762177 0.216496228730901 0.381445736335397 1.39519791848803 1.91410157782717 -0.0171822403754683 0.250860709481837 -0.154640163379215 -0.718217647694576 -1.16151944938166 -1.69073245294608 -1.85911840862567 -1.75946141444796 -1.58763901069327 -1.45705398383971
Unanno_25 -1.80321844507765 -0.906482785903898 -1.67842624797301 -0.77753594426042 -0.728828596771444 -0.702812222409862 -1.23120868980773 -1.60961978582545 -1.16968877022431 -0.620567068486181 -0.786268222898722 -0.357394646772146 0.688796955597228 0.864245236739917 1.04619160236937 1.09492723602012 -0.0389885069205978 0.100720309544878 0.0389885069205978 0.0389885069205978 0.207938703576522 0.0877241405713451 0.493854420994239 0.714789293544293 0.0454865914073641 -0.211187745819905 0.191693492359606 0.217685830306671 1.36784678446431 1.8519540787284 -0.168950196655924 -0.172199238899307 -0.454865914073641 -1.05918777134291 -1.4458237983055 -1.86495024770193 -1.96891959949019 -1.95917247276004 -1.72524143123645 -1.57253644579744
Unanno_63 -0.186107005583636 0.659833928887439 -0.910822796248381 -0.879100233567332 -1.29738695304427 -0.082907577260664 -1.57255835201703 -1.43002509688315 -1.8524590345404 -1.54444644893433 -1.6604612056618 -0.887029494145384 0.132933575416883 0.00241697409848879 0.505147586584156 0.41813651903856 -1.29791509088848 -0.959538717100048 0.466476001008336 0.413302570841582 0.949870820706093 0.485811793796246 0.785516582008855 0.969206613494003 -1.25440955711568 1.04654978464564 0.461642052811358 0.326291503295986 0.679169721675349 0.751678944630012 1.11905900760031 -0.00241697409848879 -0.703339462660237 -1.15773059317613 -1.53961250073736 -2.26470473028399 -2.44839476176914 -1.9601659938744 -1.31241693547941 -0.920867131524227
[+] Show/hide bicluster #114 motif PSSM #1. bicluster 114 motif PSSM #1 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0.333333 0.166667 0.5 0
2 0 0.833333 0.166667 0
3 0 1 0 0
4 0.166667 0.833333 0 0
5 0.166667 0 0.5 0.333333
6 0.666667 0 0 0.333333
7 0.333333 0 0.666667 0
8 0.166667 0 0.833333 0
9 0.166667 0 0 0.833333
10 0 0 1 0
11 0 0 1 0
12 0 0 0.833333 0.166667 [+] Show/hide bicluster #114 motif PSSM #2. bicluster 114 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.272727 0.727273 0 0
2 0 0 1 0
3 0 0 1 0
4 0 0 0.545455 0.454545
5 0 0.181818 0.818182 0
6 0.909091 0 0.090909 0 |