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[+] Show/hide bicluster #232 rows and columns.
bicluster 232
Desulfovibrio vulgaris Hildenborough
22x368
[+] Show/hide bicluster #232 rows (genes).
bicluster 232 genes
Desulfovibrio vulgaris Hildenborough
22
[+] Show/hide bicluster #232 rows (short gene names).
bicluster 232 short names
Desulfovibrio vulgaris Hildenborough
22
short_name
[+] Show/hide bicluster #232 rows (long gene names).
bicluster 232 long names
Desulfovibrio vulgaris Hildenborough
22
long_name
[+] Show/hide bicluster #232 rows (NCBI RefSeq gene IDs).
bicluster 232 NCBI RefSeq IDs
Desulfovibrio vulgaris Hildenborough
0
[+] Show/hide bicluster #232 gene upstream sequences.
bicluster 232 upstream sequences
Desulfovibrio vulgaris Hildenborough
22
upstream
[+] Show/hide bicluster #232 columns (arrays; conditions).
bicluster 232 arrays
Desulfovibrio vulgaris Hildenborough
368
[+] Show/hide bicluster #232 ratios.
bicluster 232 ratios
Desulfovibrio vulgaris Hildenborough
22x368
GENES X111.10 X111.2 X111.4 X111.5 X111.6 X111.8 X113.1 X116.10 X116.11 X116.13 X116.2 X116.4 X116.5 X116.6 X116.7 X116.8 X121.1 X121.10 X121.11 X121.12 X121.14 X121.16 X121.3 X121.5 X121.7 X121.9 X123.1 X123.11 X123.12 X123.13 X123.14 X123.15 X123.16 X123.2 X123.4 X123.5 X123.6 X123.7 X123.8 X1258.10 X1258.100 X1258.101 X1258.102 X1258.103 X1258.106 X1258.111 X1258.112 X1258.114 X1258.116 X1258.119 X1258.13 X1258.16 X1258.2 X1258.46 X1258.47 X1258.50 X1258.55 X1258.56 X1258.57 X1258.58 X1258.60 X1258.63 X1258.68 X1258.70 X1258.71 X1258.73 X1258.76 X1258.77 X1258.78 X1258.79 X1258.8 X1258.80 X1258.82 X1258.85 X1258.87 X1258.90 X1258.92 X1258.93 X1258.95 X1258.99 X126.2 X126.5 X127.1 X1271.1 X1271.10 X1271.5 X129.2 X1301.1 X1305.1 X1310.2 X1310.3 X14.10 X14.12 X14.3 X14.7 X14.8 X1413.15 X1414.5 X1414.6 X1415.2 X1415.3 X1415.4 X1416.4 X1416.7 X1416.8 X1417.10 X1417.11 X1417.12 X1417.13 X1417.14 X1417.2 X1417.5 X1417.8 X15.2 X16.1 X16.11 X16.13 X16.14 X16.15 X16.16 X16.17 X16.18 X16.19 X16.20 X16.4 X16.5 X16.7 X17.1 X1709.12 X1709.3 X1709.7 X1709.9 X1713.2 X1713.3 X1713.4 X1713.5 X1715.5 X1718.1 X1718.2 X1719.1 X1721.1 X1721.12 X1721.14 X1721.17 X1721.18 X1721.19 X1721.2 X1721.3 X1721.6 X1721.7 X1721.9 X1731.1 X1736.21 X175.1 X175.2 X175.3 X175.4 X175.5 X175.6 X175.7 X175.8 X175.9 X1755.100 X1755.103 X1755.104 X1755.105 X1755.106 X1755.107 X1755.108 X1755.122 X1755.123 X1755.124 X1755.125 X1755.126 X1755.127 X1755.128 X1755.129 X1755.13 X1755.130 X1755.132 X1755.133 X1755.134 X1755.135 X1755.18 X1755.19 X1755.2 X1755.20 X1755.21 X1755.22 X1755.23 X1755.29 X1755.3 X1755.32 X1755.33 X1755.34 X1755.35 X1755.36 X1755.37 X1755.4 X1755.42 X1755.46 X1755.48 X1755.49 X1755.5 X1755.50 X1755.51 X1755.52 X1755.53 X1755.54 X1755.55 X1755.56 X1755.57 X1755.58 X1755.59 X1755.6 X1755.61 X1755.63 X1755.65 X1755.66 X1755.67 X1755.68 X1755.7 X1755.70 X1755.72 X1755.73 X1755.74 X1755.76 X1755.77 X1755.78 X1755.79 X1755.8 X1755.80 X1755.81 X1755.82 X1755.84 X1755.86 X1755.87 X1755.88 X1755.89 X1755.90 X1755.91 X1755.92 X1755.93 X1755.95 X1755.96 X1755.97 X1755.98 X1755.99 X177.3 X177.4 X177.7 X178.2 X193.2 X193.3 X194.2 X194.3 X199.1 X20.1 X22.2 X22.3 X23.2 X23.3 X25.1 X25.2 X26.1 X27.1 X27.11 X27.12 X27.13 X27.14 X27.15 X27.16 X27.2 X27.3 X27.4 X27.5 X27.6 X27.7 X27.8 X27.9 X28.1 X28.2 X28.3 X3.2 X3.3 X3.4 X3.5 X3.6 X30.3 X30.4 X32.1 X32.2 X32.3 X33.3 X33.4 X33.5 X37.1 X37.2 X37.3 X37.4 X37.5 X37.6 X37.7 X37.8 X37.9 X38.1 X38.3 X38.4 X38.5 X38.6 X38.7 X380.1 X386.1 X389.1 X41.1 X41.2 X41.5 X41.6 X41.7 X42.3 X42.4 X426.1 X435.10 X435.11 X435.2 X435.3 X435.5 X435.6 X435.7 X435.8 X435.9 X449.1 X450.1 X450.2 X450.4 X450.5 X451.2 X56.3 X57.3 X59.1 X59.5 X59.7 X59.8 X59.9 X6.1 X6.10 X6.11 X6.14 X6.15 X6.2 X6.3 X6.4 X6.9 X60.2 X65.1 X72.1 X72.4 X72.5 X72.9 X73.2 X73.3 X74.1 X74.4 X75.3 X86.10 X86.3 X86.6 X86.9
DVU0302 0.265567934700931 0.271874935932767 0.442225475908956 1.16248578541864 0.815223989028428 0.52339896514796 0.385617513003869 0.259280154318033 -0.0459201457830836 0.230735912253753 0.271368786910708 0.287660378471368 1.0088599467992 0.615479645464857 0.190668130555603 0.518782117232822 0.189293199161503 0.118423366343710 -0.188060245771565 -0.427233470014556 -1.06666242139635 0.0214496985819186 0.118433617463144 0.427005126329161 0.0446126154992628 0.127849270663374 -0.374132671345863 -0.474223320110589 -0.205313392335145 -0.178974934895099 0.403399361052263 0.192773454209383 0.488969299138571 -0.509544833510745 -0.683590902042931 -0.466470911038543 -0.314813287350454 0.253416514001722 0.514941791614819 -1.24771256728189 1.45069472691872 0.402092343324414 1.28000077444149 1.77241329645899 -1.05683928619861 -0.92191148942699 -1.5275373744748 1.34553105542404 0.147624961441702 -0.0307725791512703 -0.846625986912953 0.374524520386232 0.0632966901968513 -2.355174315887 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1.72633451460266 0.390279209566531 0.79088911288178 1.17120820666714 0.125681158903060 0.71207594389248 1.1303485259927 1.49564588563730 1.42878295912831 1.97574425043457 -0.624649528076655 0.9181234445181 1.12541261198518 0.789050318333286 0.301161102766092 0.814735779465379 1.17513822958019 1.12244363151907 1.60744715696556 0.58844359934732 0.793125138308345 -1.05365118805460 -0.378098573176935 -0.0661147229292883 0.273185797830404 0.293463793461004 0.638958553138758 -0.289071445061473 -0.172178442710284 -0.320874261715872 -0.0485813363881787 0.130167305045412 0.248417811887664 0.0318001257355469 0.248417811887664 0.214016336456719 -0.184152006487311 1.21482928263913 -0.183449932945067 -0.175912284825166 -1.02417409412182 -0.91787382975988 0.365257508417796 1.00137022266265 -1.47337302216482 0.453055783591094 -0.551566734851023 -1.85773874534679 -1.86085252287490 -2.11431145088328 -2.10482916540673 -2.24752474792955 0.468558038955327 0.957663293565393 -0.869542364407907 -0.835500959547084 -1.22555733540492 -1.14250148435982 -1.38771210539353 -1.12320375202511 -0.692473497032588 -0.136292861463265 NA 0.480758152471848 1.46701963461754 1.03619840094004 1.12786519230979 0.40505876101066 -0.956119474978616 -1.33048138698282 -0.882534376900713 0.171315298453932 NA -0.322490094416674 -0.764392788202448 -0.565053363856524 0.0397602481151266 -1.62886969008098 -1.82150103814721 -1.59925676881570 -1.73308513302801 -1.62776769474182 -1.84794892628722 -1.72480735408496 -1.69889764971525 -0.170066199550885 -0.236024464769810 -0.0922727991089916 -1.13368039608677 -1.03426888398456 -0.374692638744952 -0.420738104463117 -0.362241372802295 0.265314219494937 -0.124096720255525 -1.41547982516068 -1.78141916115984 -1.12124194404341 -1.04541953914901 -1.07774131872476 -1.21393256596664 -0.0976613897368268 2.46922032609335 3.59296085235983 -2.35218867735182 -2.63476078455307 -3.47508348626498 -3.75850131081955 -0.0709471390722258 2.18664821889210 3.30954302780526 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DVU0837 0.212785746486507 0.107785326306588 -0.417760037405999 0.0130502127673723 -0.201212674886597 -0.176541769496917 0.86047612475749 0.204368251830567 -0.324700622802924 0.25170361651535 0.179240636204526 -0.371586119352264 0.0455016816384165 0.0539415841748667 -0.351422447943157 -0.103640723674736 0.0707852971654178 -1.46411226783953 0.198543913423034 -1.15947798756014 -1.22824623337455 -0.687595392409954 0.139354266790559 -0.240373439498075 -0.385718478801029 -1.07715382929940 -0.42786582046377 -0.373837170554706 -0.115122966384942 -0.125182907366554 -0.140979094706364 0.206857066039954 1.24479351234277 -0.591833347943765 -0.602122157201126 -0.532671411820013 -1.16159732831988 0.24537125211456 0.427540478565059 -1.00660834777121 0.355659076832373 -0.504375903468346 1.83111024536785 1.16986224412532 -0.874020405632243 -2.45088177294277 -1.83235584984020 1.51127452737105 -0.703881303123061 -0.104103078644356 0.0522356773631681 -0.0393605539583202 -0.34146548058038 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DVU3187 NA 0.39222490355313 0.422056391311637 0.200925618216141 0.359432625138865 0.413078831308325 0.782923090623635 NA NA 0.821455428978373 0.393067206988282 0.402334758450214 0.150171689453246 0.146558418015592 -0.318461148702596 0.413855831323407 0.126382871042794 -3.49167608208855 0.0378263419735133 -0.0988922341844237 -1.30587099692773 -3.73889933475032 0.0114377833416618 0.0921751465326796 0.373007988650221 0.406109074762788 NA NA 0.481494678790101 -0.165697632916992 -0.842205646047795 -0.138439542644332 0.0223129057749667 NA NA NA NA NA NA 0.643460442617565 -0.381385974710271 -1.63522160161092 -1.22540390134880 -0.810815730908612 -1.20983069591832 -0.435190458660582 -0.873617697939544 0.474999755587114 0.163265578596283 -0.318681409390632 0.387984608599032 0.148703469339278 0.285143897201218 0.122814537212850 -0.67196073676049 0.287429516903701 0.086413746762733 0.328158927950656 -1.30901441579216 -0.462514959190941 0.0991344423557915 -0.264717540821843 -0.390563872324309 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[+] Show/hide bicluster #232 motif PSSM #1. bicluster 232 motif PSSM #1 Desulfovibrio vulgaris Hildenborough 23x4
POSITION A C G T
1 0 0.2 0 0.8
2 1 0 0 0
3 0.6 0 0.4 0
4 0.4 0.6 0 0
5 1 0 0 0
6 0.2 0.8 0 0
7 0 0.2 0.8 0
8 0 0 0.8 0.2
9 0.2 0.2 0.6 0
10 0.2 0 0.8 0
11 0.6 0 0 0.4
12 0.8 0 0.2 0
13 0.8 0 0 0.2
14 0 0.6 0.4 0
15 1 0 0 0
16 0 0 1 0
17 0 0 1 0
18 1 0 0 0
19 0 0 1 0
20 0.8 0 0.2 0
21 0.6 0 0.2 0.2
22 0.2 0 0 0.8
23 0 0.8 0.2 0 [+] Show/hide bicluster #232 motif PSSM #2. bicluster 232 motif PSSM #2 Desulfovibrio vulgaris Hildenborough 15x4
POSITION A C G T
1 0 0.833333 0 0.166667
2 0 0 1 0
3 0.666667 0 0.333333 0
4 0 0 0.333333 0.666667
5 0.833333 0 0 0.166667
6 0 0.333333 0 0.666667
7 0.333333 0.333333 0.166667 0.166667
8 0 0 1 0
9 0.166667 0 0.833333 0
10 0 0 0 1
11 0 0 0.166667 0.833333
12 0.333333 0 0 0.666667
13 0 0 0 1
14 0.333333 0.666667 0 0
15 1 0 0 0 |