{"id":51,"date":"2025-08-08T23:04:46","date_gmt":"2025-08-08T23:04:46","guid":{"rendered":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/?page_id=51"},"modified":"2025-10-14T22:51:45","modified_gmt":"2025-10-14T22:51:45","slug":"marie-andken","status":"publish","type":"page","link":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/marie-andken\/","title":{"rendered":"Marie Andken"},"content":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-362 aligncenter\" src=\"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-content\/uploads\/sites\/13\/2025\/08\/IMG_7821-Medium-225x300.jpeg\" alt=\"\" width=\"225\" height=\"300\" srcset=\"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-content\/uploads\/sites\/13\/2025\/08\/IMG_7821-Medium-225x300.jpeg 225w, https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-content\/uploads\/sites\/13\/2025\/08\/IMG_7821-Medium.jpeg 480w\" sizes=\"auto, (max-width: 225px) 100vw, 225px\" \/><\/p>\n<p>Marie Andken has been interning at the Institute for Systems Biology, working in the Moritz lab under Dr. Eric Deutsch for a year. She is currently a freshman at the University of Washington and is majoring in Computer and Electrical Engineering.<\/p>\n<p>At the Moritz lab over the school year during her senior year in high school, Marie \u00a0built the Human Proteome Project Pipeline. A Python pipeline that downloads the information from GENCODE and builds a table of all the current human protein coding genes. Information from other proteomic databases are also incorporated into the table. As part of this project she contributed to a paper describing the pipeline and recommending that certain proteins with a PE score of 5 be upgraded to a higher certainty of \u00a0existence.<\/p>\n<p>Over the Summer, with fellow Intern Clarissa Zhang, Marie has been working on RunAssessor, a tool used by PeptideAtlas to add lost metadata to mzML files that have been dropped in public mass spectrometry databases. Currently, she is working with Clarissa to write a paper on the use of RunAssessor.<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Marie Andken has been interning at the Institute for Systems Biology, working in the Moritz lab under Dr. Eric Deutsch for a year. She is currently a freshman at the University of Washington and is majoring in Computer and Electrical Engineering. At the Moritz lab over the school year during her senior year in high [&hellip;]<\/p>\n","protected":false},"author":105,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"wp-custom-template-marie-andken","meta":{"footnotes":""},"class_list":["post-51","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/pages\/51","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/users\/105"}],"replies":[{"embeddable":true,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/comments?post=51"}],"version-history":[{"count":7,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/pages\/51\/revisions"}],"predecessor-version":[{"id":584,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/pages\/51\/revisions\/584"}],"wp:attachment":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2025\/wp-json\/wp\/v2\/media?parent=51"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}