{"id":552,"date":"2016-08-19T22:21:16","date_gmt":"2016-08-19T22:21:16","guid":{"rendered":"http:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/?page_id=552"},"modified":"2016-09-01T20:12:59","modified_gmt":"2016-09-01T20:12:59","slug":"chlamydomonas-reinhardtiii","status":"publish","type":"page","link":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/projects\/environment\/chlamydomonas-reinhardtiii\/","title":{"rendered":"Chlamydomonas reinhardtiii<\/em>"},"content":{"rendered":"

by Christine D. Pham<\/p>\n

Background<\/strong>
\nChlamydomonas reinhardtii<\/em>, or \u201cChlamy\u201d for short is a unicellular, soil-dwelling, photosynthesizing, green algae flagellate. It is approximately 10um long and lives in various environments throughout the world. Similar to most model organisms, the genome for C. reinhardtii<\/em> has been completely sequenced. The genome is relatively small compared to other organisms. C. reinhardtii<\/em> can be easily manipulated, genetically and molecularly, making it an ideal model organism. It is a haploid organism with the capacity to grow with light as its sole energy source utilizing photoautotrophic growth and it can also feed on acetate to grow in the dark.<\/p>\n

Experiment<\/strong>
\nAs part of my internship at ISB, I teamed up with Jordan Raymond, an undergrad intern, to lay the groundwork for phytoplankton research. We set out to graphically determine the relationship between optical density and cell count C. reinhartii<\/em> for use in future experiments.
\nMany experiments require an approximate cell count to understand relative cell growth or transfer procedures. Currently optical density is easy to measure at 680nm and 720nm with an aquapen. An aquapen works like a spectrometer, measuring the reflection or transmission of light at\u00a0680nm and 720nm. Optical density at\u00a0680nm measures the amount of chlorophyll and optical density at 720nm measures particulates. However, counting C. reinhartii\u00a0<\/em>cells require a more extensive protocol, including the use of formaldehyde and microscope, and is time consuming.<\/p>\n

\"map<\/a>
Growth indicators of C.\u00a0reinhartii<\/em> in TP-NO3 media:<\/strong> This graph displays optical density at 680nm, optical density at 720nm and cell count. Notice the similarities and general trend.<\/figcaption><\/figure>\n

There is a strong correlation between optical density and cell count. When graphed against each other, a linear correlation (R^2) can be calculated. An R^2 value closer to 1 shows a stronger correlation.<\/p>\n

\"map<\/a>
This graph displays OD680 against cell count and it has an R^2 value of 0.9313.<\/figcaption><\/figure>\n
\"map<\/a>
This graph displays OD720 against cell count and it has an R^2 value of 0.8776.<\/figcaption><\/figure>\n

There is a greater fit between optical density and cell count at earlier stages of growth, as the population gets into late log phase and into stationary then the correlation is less significant. As growth continues the use of OD to infer cell count or vice versa is less accurate.<\/p>\n

Conclusion
\n<\/strong>In Chlamydomonas<\/i> reinhartii<\/i> there is a significant correlation between optical density and cell count<\/strong>, where one can be used to infer the other. This will prove to be useful in future experiments.<\/p>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

by Christine D. Pham Background Chlamydomonas reinhardtii, or \u201cChlamy\u201d for short is a unicellular, soil-dwelling, photosynthesizing, green algae flagellate. It is approximately 10um long and lives in various environments throughout the world. Similar to most model organisms, the genome for C. reinhardtii has been completely sequenced. The genome is relatively small compared to other organisms. C. reinhardtii can be easily manipulated, genetically and molecularly, making it an ideal model organism. It is a haploid organism with the capacity to grow with light as its sole…<\/p>\n","protected":false},"author":14,"featured_media":0,"parent":462,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-552","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/pages\/552","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/users\/14"}],"replies":[{"embeddable":true,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/comments?post=552"}],"version-history":[{"count":27,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/pages\/552\/revisions"}],"predecessor-version":[{"id":797,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/pages\/552\/revisions\/797"}],"up":[{"embeddable":true,"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/pages\/462"}],"wp:attachment":[{"href":"https:\/\/baliga.systemsbiology.net\/see-interns\/hs2016\/wp-json\/wp\/v2\/media?parent=552"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}