[+] Show/hide bicluster #70 rows and columns.
bicluster 70
Helicobacter pylori 26695
18x37
[+] Show/hide bicluster #70 rows (genes).
bicluster 70 genes
Helicobacter pylori 26695
18
[+] Show/hide bicluster #70 rows (short gene names).
bicluster 70 short names
Helicobacter pylori 26695
18
short_name
[+] Show/hide bicluster #70 rows (long gene names).
bicluster 70 long names
Helicobacter pylori 26695
18
long_name
[+] Show/hide bicluster #70 rows (NCBI RefSeq gene IDs).
bicluster 70 NCBI RefSeq IDs
Helicobacter pylori 26695
36
[+] Show/hide bicluster #70 gene upstream sequences.
bicluster 70 upstream sequences
Helicobacter pylori 26695
18
upstream
[+] Show/hide bicluster #70 columns (arrays; conditions).
bicluster 70 arrays
Helicobacter pylori 26695
37
[+] Show/hide bicluster #70 ratios.
bicluster 70 ratios
Helicobacter pylori 26695
18x37
GENES Stat-iron-survival-2hrs Log-Chelate-T TC-Motility_broth-T-6 FeAddBack-2-30-repeat Log-Chelate-T-2 TC-Motility_broth-T-5 TC1-30HR TC1-12HR FeAddBack-1-30-repeat TC1-48HR Stat-Chelate-T FeAddBack-1-0-repeat FeAddBack-1-120-repeat Log-iron-survival-0 TC1-18HR TC1-36HR FeAddBack-2-60-repeat TC2-12HR Stat-Chelate-T-5 TC1-60HR G27pH-5-T2 TC1-24HR G27pH5-T1-2 Stat-iron-survival-0 FeAddBack-1-60-repeat Stat-Chelate-T-3 TC-Motility_broth-T Log-iron-survival-60 TC2-28HR Log-Chelate-T-4 Stat-Chelate-T-2 TC2-50HR TC2-18HR TC-Motility_broth-T-4 TC1-6HR FeAddBack-2-0-repeat TC1-42HR
HP0867 0.587782231525524 0.122901513721633 -0.375264219676809 0.220537559465649 -0.0823560824447625 -0.255438163536426 -0.95442349102199 0.213880556346739 -0.197744136505872 0.107368506444176 -0.0213335538547529 -0.370826217597535 -0.688143366265585 0.28045058753584 0.210552054787283 -0.932233480625623 -0.00801954761693266 -0.445162752425365 -0.232138652620241 0.0696454887703522 0.0607694846118054 -0.355293210320078 1.69284474926461 0.179486040232369 -0.285394677571522 -0.125626602717678 -0.27319017185352 -0.336431701483166 -1.48920274157444 0.059659984091987 -0.0279905569736631 -1.88973242922886 -0.572755312204476 -0.381921222795719 0.444656664468957 -0.359731212399352 -0.483995270619007
HP0923 -0.131941538577302 0.315623305743754 -1.98646085572626 1.41480648764056 0.192740262844522 -1.10373220811068 0.392284286635018 -0.0282237409008859 0.524186268462634 -0.97295759364911 0.552370452613834 0.555752554711978 1.28064977108084 0.144263466104458 -0.117285762818678 -0.09361104813167 0.620012494576715 -0.818508264500534 0.119461384051402 -0.342759236028278 1.36407495616840 0.100296138828586 0.386647449804778 0.418213736054122 0.765442884796907 -1.24014365940249 -1.87259675175541 -0.84331034655359 -0.556959035577398 0.60535671881809 -1.05074594190642 -0.717045201556214 -1.16686478060937 -0.363051848617142 -0.0496437208557979 0.744022904841995 0.955967969659019
HP0114 -0.757450296593812 0.144219299882851 -1.39935815703988 -1.99747262950549 -0.0384855990165191 -1.03115897147168 -0.460380499146745 0.443939015710902 -0.903195807547889 0.0319464421622464 -0.0587086603450761 0.604119608371915 1.69790828746986 0.137943177401575 0.524273383471236 0.912695630367989 1.57322265417518 -1.08485468603371 -1.39343070802979 0.204191136926156 0.632362159537658 0.21709205535989 1.67280379754476 0.0570509320873507 -0.427186784690217 0.113884707890016 0.120858177313657 0.727898690641525 -0.81637611322357 -1.27662509518382 1.22336369319115 -1.86135050635603 -0.603336622331366 -0.186602089574635 0.457851087211064 -0.119726517801925 0.60690899614137
HP0115 0.962324518210782 0.199125719590049 -2.03365541651297 0.854551241966565 0.518345478030801 -0.938350924248372 0.0550375350461505 0.0269227673302678 0.516588305048558 -1.46843144055824 0.516002580721144 0.446887110086266 0.57223211615291 -0.00177772471302915 -0.197995374396794 0.203811514209363 0.434001174883153 -1.04378130318293 -0.68707518778767 -0.904964637585761 1.15502782193006 -0.0691360223656648 0.110681346150502 0.192682751988493 0.516588305048558 0.833465166179653 -0.0902220981525769 0.0310228376221674 -0.98110880014961 -1.53930408417537 1.94458421528443 -2.10042798983819 -1.27221379087448 -0.127708455107087 -0.164609087734183 0.309241893143923 -0.311625893915153
HP0118 -0.088835827205916 0.119613772965061 -2.08788044002572 0.0865984636212107 -0.662395907179474 -1.33305983816436 0.331300168169749 0.00438386976495572 0.298284858825899 -0.353605660963461 0.179818160592082 -0.106314520387954 0.517739562111492 0.0963088487223431 0.0393412561290326 0.0581146673245554 0.0335150250683531 -0.127677367610446 -0.426757228725326 -0.742668424015503 2.36336009033340 -0.0176263364642779 1.0045535351816 0.0574673083178132 0.225780650070776 -0.40409966348935 -1.21200370390357 -0.26038596399259 -1.08512133858211 -0.885087405498779 -0.283690888235308 -1.56869851661851 -0.525155797750135 -0.877319097417873 -0.193060627291405 -0.0383418246800272 0.00762066479866654
HP0755 0.443032047320987 0.167144741591634 -1.66311079136997 -0.193162339076985 -0.0321555518216845 -1.03213824672082 -0.321967768881226 0.0592266787826754 -0.0312852448635477 -0.449032584769193 0.25939727915413 0.322929687098114 0.356871658465447 0.0574860648664018 0.517008138762611 -0.185329576453754 0.0574860648664018 -0.4847151700528 -0.500380695299262 -0.469049644806338 1.42647891001553 0.424755601200115 1.22978953747662 -0.0173603335333596 0.238509912158848 -0.509954071838766 -0.298469481011533 0.272451883526182 -1.60131899734226 0.0801140457779576 -0.307172550592901 -1.30889585940831 -0.965124610944291 -0.846762864637692 0.179329039005548 0.175847811173001 -0.467309030890065
HP0859 -0.216709849350655 0.58871080538234 -1.78738055259555 0.0765355760633532 -0.565189858318671 -1.26415840656576 0.519416509650947 -0.295042531481794 0.150851197572383 -0.417562880456140 0.95526758714985 0.707214093734576 0.699179972490356 0.540506077917023 -0.137372902063988 -0.273952963215718 0.765461472755166 -0.858435283732679 -0.560168532541034 -1.10347598168137 1.09184764830158 -0.352285645346857 1.82797400730318 0.711231154356685 0.433049706275589 -0.473801729165675 -0.94781488257462 -0.67465476027116 -1.22197927003361 -0.403503168278756 -0.139381432375043 -0.826298798755801 -0.999032405506518 -0.972921511462805 1.91534507583407 0.843794154886305 0.195038864415589
HP0869 0.0563480645467428 0.0692191853325431 -1.65155065510754 1.18108600398284 -0.630771768172138 -1.13769590988981 0.835545915194811 -0.207014868455019 0.806833414980333 -0.335726076313022 0.301889445691242 0.328621773477135 0.64445927583639 0.0999118579756055 0.406838584406230 0.181098927547577 0.710795052193977 -1.18422996196155 -0.790175648673204 0.153376513547392 1.66127781791462 -0.099095471097154 0.820694621980426 0.201890738047716 0.658320482836483 -0.0129579704537207 -0.9070058219597 -0.557505388314505 -1.13472565124694 -1.27531789367645 0.543470481978572 -1.00205409853176 -1.24462522103339 -0.659484268386616 -0.270380386169728 -0.0387002120253215 0.49198599883537
HP0870 0.974568696525272 0.323856399038257 -2.23459124590481 0.454509221121924 0.311097334381649 -1.08525470163755 0.479516987848876 0.214638805577691 1.10879405671279 -1.48895150737263 0.578016966997891 0.530042883889044 0.670392595111734 0.171257985745224 0.166664722468845 0.617314886140244 0.508097292679678 -0.989306535419852 -0.925511212136812 -1.14802929974806 1.38847275398564 0.332022200418486 0.357540329731702 0.252405636961251 0.464716472847211 0.936801865141712 -0.560091600371554 -0.110972524458948 -0.973485295245658 -1.23223912648167 1.68652450436401 -2.16569229675912 -1.29348263683339 -0.462612346395068 0.0344808126263845 0.00896268331316825 -0.110462161872684
HP1076 0.598286933558097 0.061345354187602 -2.47893424139276 0.735113745289574 -0.635918550039978 -1.53842267186477 -0.0630426564773775 -0.00430387366335944 0.567880975395546 0.310121375517561 0.209228877978189 0.310812420021255 0.745479412844989 0.0226468619807195 0.133905027075507 -0.141821729898531 0.707471965141801 -0.735428958571961 -1.14936461628487 0.402030294508907 2.54565034496872 -0.149423219439169 0.85259131091761 -0.0478396773961023 0.675683917971862 0.0689468437282396 -0.976603490361283 -0.59169170180354 -0.295924654222367 -1.67248530558147 0.968686787538258 -0.639373772558449 -0.59791110233679 -0.983513935398226 -0.0291814757963553 0.200245299430162 0.0544349091506587
HP1119 0.223361343777816 0.335933148912334 -1.97920212156145 0.574255897343458 -0.388370319245853 -0.899611053783588 0.563273282208383 0.536915005884203 0.80928386123406 -1.22249993875479 0.471019315073754 0.477059753398045 0.989947880206041 0.151974345399830 0.399083185939014 0.557232843884092 0.700555971396819 -0.530046054488319 -0.548167369461192 -0.883137131080975 1.31722981123127 0.360644032966252 0.395788401398491 0.065760816589492 0.732954686045289 0.0135933946978865 -0.382879011678316 -0.526751269947796 -1.08411898805285 -1.95284384523727 1.10306881609731 -2.15217830993887 -1.02316547405318 -0.438341218110444 0.186569583075315 0.419401023938902 0.0959630082109479
HP1154 0.185003347770771 0.356547099041679 -1.46083015084436 0.49246674861096 -0.0871099829193434 -0.908930606020706 0.125538501084210 0.213593972982589 0.78294019325499 -1.07362356850284 0.481779518100472 0.349696310252904 0.883783804225747 0.353258720423067 0.298726441664424 0.0988660967332493 0.527268755657934 -0.876686226788204 -0.803976521776684 -0.7615929751368 2.39780812654486 0.207382591147433 0.841856976838448 0.138692015558657 0.723201315016878 0.00195027133472217 -0.678470071166339 -0.0783409732697123 -1.34436674143520 -1.40520174587951 0.813083663925596 -1.93408264037289 -1.12431940553977 -0.461985145441072 0.0181181328762295 0.525076503245526 -0.0925906139503628
HP1187 -0.328008280265957 -0.100149229662219 -1.43970569796308 0.628009040745381 -0.526146585138774 -0.841752599329045 0.00882683801783034 -0.565774246113337 0.292589196067828 -0.538884047594883 -0.136946343424313 0.109311264060473 0.326555762617454 -0.149683805880423 -0.536053500382415 -0.474489098511218 -0.0852888567967574 -0.0116946292725685 -0.227523854223315 -0.378250493287279 1.93218366889038 -0.610355364709721 0.674713069751117 -0.0640597527032414 0.173706213144138 -0.460336362448874 -1.12126913656034 -0.138361617030547 -0.866519887438147 -0.520485490713836 -0.0902423144185778 -1.69303967347904 -0.418585791064959 -0.657059393715456 -0.403017781396381 0.0406704941581044 -0.292626440110097
HP1188 -0.529648473520886 0.144349002999524 -1.81556471161904 1.01443638862456 -0.717855371204217 -1.15536250508589 0.590724524730146 0.0192061966865234 0.303979984280673 -0.100024351060508 0.271462562167846 0.255696539325264 0.744443247445327 0.234018257916713 -0.416330184339823 0.264564927174217 0.402517627046815 -0.108892738909461 -0.333558564416264 0.147305132282508 2.53782834578911 -0.331587811560941 -0.659718161972194 0.140407497288878 -0.0438578946838073 -0.64986439769558 -1.22926573716049 -0.64986439769558 -1.03021969877289 -0.975038618823847 -0.527677720665564 -1.44506317481834 -0.892266998900288 -0.664645044110501 -0.0497701532497758 1.72883429867908 0.37788321635528
HP1210 0.99572813169707 0.354070238774749 -1.76464272637134 -0.0416877906663738 -0.466423918497537 -1.09317878939070 0.385532174169649 0.711742767474675 0.742376757201289 -0.503681473570446 0.917901238878105 0.727473735172125 0.624808472304554 0.365661478130765 0.436036859935148 0.70511920212838 0.818547758683681 -1.69592323590353 -0.348027687932515 -0.533487517628773 2.07868106581629 0.88229957514177 -0.174159097592273 0.262168269594906 0.431069185925427 0.590034754236506 0.192620833458809 0.00302127542111692 -1.91118910965812 -0.189890065289723 -0.261921338430680 -1.53198999358273 -1.82839454282943 -0.170019369250838 0.448456044959451 0.0982350272741067 0.0253758084648623
HP1233 0.545443890351607 0.064934442545714 -1.72769576133958 0.252085654513031 -0.67078120339743 -0.758943344572116 0.312922687604335 0.51347866957482 0.297971213370031 -0.185116074821087 0.312922687604335 0.222698274121469 0.501620603802787 0.107726592940445 0.291268828368447 0.569160021895675 0.428409936862404 -0.616130987230665 -0.515595212206900 -0.202645389440615 2.4092224888691 0.324780753376369 -0.625411212617474 0.0293602452296124 0.41036505416583 -0.0727222340252877 -0.00569838400944418 -0.613037578768395 -1.36422026702289 -1.68748145133007 0.764560323095711 -2.02311626948633 -1.27966710238752 -0.387218761022707 0.421191983783774 0.283019739135728 -0.0263211070912422
HP1558 0.0261289110704984 0.56019527822623 -1.47471977617199 1.11007518519007 -0.347645666212113 -0.88674361421588 0.647169747170838 0.526411806817994 0.790210402707837 0.0591935852147294 0.673046448675019 0.625605829250687 1.18698649243861 0.269082386304196 0.575290020770336 0.437280946081371 0.427936581649306 -1.37408815921129 -0.55465927824556 -1.69970331980556 1.71386488695429 0.497659916257793 0.466032836641572 0.437280946081371 0.872872088068415 -0.495717902597148 -0.773173646503086 -0.500030686181178 -1.28783248753068 -0.588442749653796 0.0419424508786089 -1.24398585442638 -1.80321012582228 -0.622945018326037 0.145449256895332 0.535037373986054 0.300709465920417
HP1559 0.157532211884092 0.264925139125505 -1.86023521603344 -0.342166739791253 -0.122976758954678 -1.37408742236963 0.686704932234525 0.420424677307867 0.150756632878324 -0.507829646482266 -0.0802906112183436 -0.0152450527629766 1.54178300276237 0.099939790335069 0.569826194385038 0.419408340457001 0.155499538182362 -0.994654998046653 -1.05665154594942 -0.215124633433115 2.64552482280188 0.495972383222173 1.00143057705242 0.106037811440260 0.26594147597637 -0.336407497636351 -0.848641270472366 -0.166679243541878 -1.05563520909856 -0.599299963060126 -0.0565760846981577 -1.55533416077390 -1.23891462120457 -0.6816232479802 0.0884213060252644 -0.110441937794008 0.575246657589651
[+] Show/hide bicluster #70 motif PSSM #1.
bicluster 70 motif PSSM #1
Helicobacter pylori 26695
20x4
POSITION A C G T
1 0.181818 0 0 0.818182
2 0.181818 0 0.090909 0.727273
3 0 0 1 0
4 0.272727 0 0.636364 0.090909
5 0.636364 0 0 0.363636
6 0.909091 0 0.090909 0
7 0 0.636364 0 0.363636
8 0.454545 0 0.545455 0
9 0.454545 0.363636 0.181818 0
10 0.272727 0.363636 0.272727 0.090909
11 0.181818 0.181818 0 0.636364
12 0.090909 0 0 0.909091
13 0.181818 0 0 0.818182
14 0 0.090909 0 0.909091
15 0 0.181818 0.727273 0.090909
16 0 1 0 0
17 0.090909 0 0 0.909091
18 0 0 0 1
19 0.272727 0 0.454545 0.272727
20 0.272727 0 0 0.727273
[+] Show/hide bicluster #70 motif PSSM #2.
bicluster 70 motif PSSM #2
Helicobacter pylori 26695
24x4
POSITION A C G T
1 0 0 0.75 0.25
2 0 0 1 0
3 0.25 0 0 0.75
4 1 0 0 0
5 0.75 0 0 0.25
6 0 0 0 1
7 0 0 1 0
8 0 0 1 0
9 0.75 0 0.25 0
10 1 0 0 0
11 0 0 0 1
12 0 0.75 0 0.25
13 0.75 0 0.25 0
14 0 0 0.75 0.25
15 0 0 0 1
16 1 0 0 0
17 1 0 0 0
18 1 0 0 0
19 1 0 0 0
20 1 0 0 0
21 0 0.75 0 0.25
22 1 0 0 0
23 0 0 1 0
24 0 0 1 0
|