[+] Show/hide bicluster #22 rows and columns.
bicluster 22
Helicobacter pylori 26695
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[+] Show/hide bicluster #22 rows (genes).
bicluster 22 genes
Helicobacter pylori 26695
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[+] Show/hide bicluster #22 rows (short gene names).
bicluster 22 short names
Helicobacter pylori 26695
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short_name
[+] Show/hide bicluster #22 rows (long gene names).
bicluster 22 long names
Helicobacter pylori 26695
24
long_name
[+] Show/hide bicluster #22 rows (NCBI RefSeq gene IDs).
bicluster 22 NCBI RefSeq IDs
Helicobacter pylori 26695
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[+] Show/hide bicluster #22 gene upstream sequences.
bicluster 22 upstream sequences
Helicobacter pylori 26695
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upstream
[+] Show/hide bicluster #22 columns (arrays; conditions).
bicluster 22 arrays
Helicobacter pylori 26695
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[+] Show/hide bicluster #22 ratios.
bicluster 22 ratios
Helicobacter pylori 26695
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GENES Stat-iron-survival-30 TC-Motility_broth-T-5 Stat-Chelate-T-5 TC2-50HR Log-Chelate-T-5 TC-Motility_broth-T-6 TC-Motility_broth-T TC1-24HR Log-iron-survival-2hrs Log-Chelate-T-3 G27pH-5-T2 FeAddBack-1-120-repeat Log-Chelate-T-2 Log-Chelate-T TC2-6HR Log-Chelate-T-4 Log-iron-survival-30 FeAddBack-2-120-repeat Stat-Chelate-T-4 Stat-iron-survival-0 TC2-12HR TC2-28HR Stat-Chelate-T-2 TC-Motility_broth-T-2 TC2-18HR FeAddBack-2-30-repeat TC1-60HR Stat-Chelate-T G27pH5-T1 G27pH5-T1-4 TC1-6HR Stat-iron-survival-2hrs TC1-12HR TC1-18HR G27pH5-T1-3 TC-Motility_broth-T-3 Stat-iron-survival-60
HP0744 -0.310809332323712 1.61496508177144 1.83732253989376 1.14642615215653 1.49882301659147 2.00905396960431 0.945907372956936 -0.533166790446039 0.129934915025899 0.251040316324666 -0.397171380790866 -0.859754307063206 0.263944990233551 -0.630448178374557 -0.117239223690437 0.69972590146436 0.446595759405462 -1.22704117985455 -0.462687417559051 -0.423973395832396 0.149788259501107 0.208355625702969 0.38902106042736 1.82838853487992 0.0147855170696942 -0.618536171689432 -2.11647101234385 -0.230403287199121 0.366189714280871 0.304644346407727 -1.63701274326759 -1.60822539377854 -0.413054056371032 -0.727729566303075 -1.13571579526859 1.87305855994914 -0.555005469368767
HP0844 0.090903413078829 0.608482008882783 0.766419595102372 1.69882221254332 0.386798529429987 0.825408332124146 0.481941653658655 -0.586515631429287 1.82345970528287 1.62746486937182 -1.91281078317692 -0.619815724909321 0.948142962379128 -0.485663919746899 0.39440997936828 2.22686655201243 0.404875723033434 -0.670241580750515 0.184143674822924 -0.285863358866696 0.568521896706742 1.12415774220216 0.724556620441758 0.780691063736672 0.758808145164078 0.0214489323919015 -1.05081407766519 -0.0594227232024664 -1.13073430201727 -1.53128685501996 -0.870993572873004 0.297363992655039 -1.91756793938835 -0.798684798459217 -1.51130679893194 0.955754412317421 0.0661662007793754
HP0845 0.0649992334211418 0.257228509958576 0.371035892585217 1.57701160260365 -0.373972099567328 1.01562560594955 0.145333856451711 -1.35807123169181 0.988847398272693 1.61430982043927 -0.939183554460979 -0.93057627342199 1.23463309016384 -0.505950408831836 1.29010223463733 1.61909164323871 0.0621301397414786 -1.17349287163347 0.426505037058705 -0.565245011544875 0.195064813565874 1.41347326286285 0.338519497549034 0.223755750362506 1.09882932265978 -0.0373317744868458 1.74054994234445 -0.631234166177129 -1.43840585472238 -1.55412596646879 -0.415095775642501 -0.0363754099269581 -1.08072550932436 -0.551855907706447 -1.85920626107298 0.000922807908663574 -0.158790073592588
HP0900 0.333287406789302 1.28295330660247 1.47735709636452 0.132787330937163 0.995073130125586 2.24007022274799 0.774929465760906 -0.471422357103744 1.63992472543382 0.962559604311725 -0.691566021468424 -0.675986623682616 0.898209917805127 -0.999767151578976 0.0447298651912905 1.13190088459225 0.83792442202526 -1.42108825691692 0.415248586445075 -0.921192797528813 0.531078022156953 0.415925951566197 0.547334785063883 1.32562730923317 0.50737024291768 -1.31000037705289 -1.75977081747796 -0.633312621051924 0.123304219241453 0.77289737039754 -1.58365588598622 0.134142061179407 -0.886647176351586 -0.61908795350836 -0.65160147932222 1.54644833871897 0.324481660214715
HP0938 0.0730982731119856 1.36919472382180 1.01612714040552 0.848937769717704 0.861060261852168 1.68033868860638 1.42677656146050 -0.723450480890109 0.354946215238282 0.927228864752786 -0.536056956644848 -1.31038114173376 0.633763534330962 -0.291081594760881 1.1686684997642 0.458997606059101 1.11765301203166 -1.48312665464987 1.29746997869288 -0.303204086895345 0.656998310922018 0.812570293314311 0.840351004455792 1.0242088018285 0.994912779170212 -1.85437797626785 -0.977517711874924 -0.418872866011692 -0.763353684166054 -1.16642654763699 -0.378464558896811 0.743371067380077 -0.935594093243235 -0.203698630624950 -0.137530027724332 1.03279556709041 0.281201054753624
HP1161 -0.0331944309328497 0.3423402805583 0.285604820548846 1.09611139211248 1.08530463782496 0.571083246310703 0.319826209125977 -0.207003062390384 0.0910832433735739 0.457612326291794 -1.06974227967701 -0.660886742466018 0.241477240541492 -0.413231956710464 -0.0431006223630718 0.290107634835310 0.287405946263432 -0.466365165290747 0.983541034950862 -0.430342650999030 0.51795003773042 1.68958231506852 0.468419080579310 0.855661109215267 0.912396569224721 -0.554620325305453 -2.13510813985454 -0.100736645229819 -0.927453348224724 -0.478973045292847 -1.20392614541365 0.763803697771389 -0.0620124423662233 -0.646477736749332 -0.668091245324362 1.04027649496032 0.178437840530988
HP1192 -0.251391576384522 0.220934378366649 0.523922731562585 2.69242367048685 1.24675637787067 1.70228852089736 0.644278382254736 -0.862266477862703 0.281811945867911 0.836007732775952 -0.669137643031113 -1.41856149123630 0.502230724751791 -0.907049975794666 -0.280780746902372 0.869595356224924 0.743641768291278 -1.87409363426299 0.585500041219034 -0.669137643031113 -0.143631284485736 0.230031026384079 0.111774602157490 1.29084013364745 0.644978124409922 -0.704824492945646 -0.357052641817747 -1.07918654597065 -0.459914738630224 -0.653043573461814 -1.60889135744715 0.194344176469546 -0.609659559840225 -0.416530725008635 -0.403235624060083 1.02353863036605 0.0264060592246854
HP1285 0.636870160297632 1.01846885157271 0.76406972405599 1.54300644656614 0.743833429821706 0.84373005691476 -0.30877508138067 -0.833312676374103 -0.494113839685147 0.950372115419241 -0.166157388681904 -0.741446324770844 0.98217200635883 0.147665777459298 -0.120866634919459 0.947160005223324 0.543076542576821 -1.22101437702142 -0.0424911461390559 0.122932528950728 -0.291108475303120 1.88252649427469 0.172077814948276 0.686657868334362 0.314695507647041 -1.70854846255788 -0.954409230760217 0.200986806711539 -0.948627432407564 -1.59554642586548 -1.16223276043612 0.384077087878873 -0.817894547433696 -0.811470327041859 -1.23803856105979 1.17297135199637 0.316622773764592
HP1369 -0.560836358480384 1.67206722245816 1.46141594123754 2.18375833465951 1.23850858547318 1.45681991328364 0.357603227641507 -0.598370586770603 0.498548084894575 0.533784299207842 -1.48233996323821 -0.631308787106918 0.344581148438778 -0.733953411410782 0.703837333502304 0.718391422023001 0.0351152662092168 -0.717867313572117 0.575148550792981 -0.740081448682655 0.601958713857423 1.04547541140920 0.216658370388440 1.29289491626105 0.543742359774635 -0.352483091236719 -0.487299911217914 -0.520238111554229 -1.49612804709992 -0.898644413092356 -1.58804860617801 -0.0759554093434723 -0.86723822207401 -0.789871751516619 -1.30922291030781 1.43690379215005 -0.0912755025231535
HP1406 0.156796845154789 1.11727782258182 1.62038690599599 0.590833438452721 0.774715608086468 2.20656965995534 1.73799682159930 -1.02396937102130 1.58958430905226 0.508693179936123 -2.26260713297045 -0.586199129608981 0.929662004833687 -0.799017072129257 -0.0793563980804292 0.573098609909364 0.962331425834606 -0.534861468036108 0.87552410717502 -0.959563941048062 0.147462724868812 -0.106425346909763 0.559097429480399 1.75199800202826 -0.190432429483556 -0.504992283120981 -0.385515543460475 -0.404183784032429 -1.09770892128052 -0.220301614398682 -1.12571128213845 0.227736159328215 -1.29092521120025 -1.30119274351482 -0.244570327142222 1.79960201548674 0.275340172786698
HP1528 0.192235459086939 1.24095915201152 0.906218932683195 2.09941624628127 0.918473391579608 1.89496027416744 1.04037300902287 -1.66205766339656 -0.278593751143654 0.53278042210304 0.139347794376106 -1.88199295201113 0.786899201323387 0.403786117930275 0.735946451175145 0.385081943825223 0.942982309372433 -0.386948966648777 0.490857273246891 0.301235646112926 0.0580813827472635 1.62342726388377 0.388951772950406 0.538585165790814 0.630816093274342 -1.21960720008398 -0.894541553568608 -0.573345736178423 -0.354700390605585 -0.928725044174391 0.684993701026903 0.116773791145872 -0.374694507752364 -0.443706460484794 -0.659771919974175 0.569543798792278 -0.194747453431356
HP0210 0.672118126962615 0.825942172972796 0.425240028427756 1.68336879980732 0.428088621872389 0.956977471425913 -1.00760247422264 -1.11964714971153 1.09465948791651 1.98626923608663 -0.662922667422045 -0.515745339449341 1.78306957036948 -0.413195975442553 -0.780664529800208 2.03374579349718 0.79080952048899 -0.99146044470305 0.787011395896145 -0.129286162127466 0.0910050642574853 0.451826900577664 1.09276042562009 0.579064074437937 0.163169431521521 -0.523341588635029 -0.841434523285712 0.0663172544039994 -0.699954382202274 -1.09685840215447 -2.74429494430055 0.159371306928677 -1.47572133029066 -0.938286700403234 -0.463521126297736 0.789859989340778 0.604701415439634
HP0546 0.0524971807035972 1.30353944889804 0.686944521983326 -0.264726489936267 0.858602352416153 1.91052153730852 0.58394982372363 0.136266201954817 1.55209998736477 0.802298584034186 -1.06396534843151 -0.437757583012557 1.01240776848397 -0.727516000783169 -0.569590796784968 1.23487631672491 1.29667313568073 -1.30840609896786 0.638880329462134 -0.694557697340066 0.354614962265373 0.0511239180601346 0.659479269114074 1.08244416330056 0.47408881224662 -1.00628831740608 -3.29963693198865 -0.459729785307958 -0.877201628920594 -0.568217534141505 -1.38942859493215 0.0167923519735693 0.218661960562574 0.483701650750859 -0.87994815420752 1.00554145526665 0.398559366856176
HP0723 0.157759699995437 1.38289823213129 1.17390885190126 0.711499278321445 0.609472966713087 1.70707860933849 0.681055943406048 0.768271983974483 1.22985876471875 0.845614510516303 -1.12908829480676 -0.91104819338567 0.646498644312894 0.0219988821294762 0.126493572244488 0.8439689248452 0.503332690926973 0.296811689203602 0.192316999088590 -0.000216524430408240 0.182443485061975 -0.0265458951680490 0.523902511815755 0.654726572668407 0.110037715533463 -0.413258527877149 -0.0750906724655743 0.0236444678005788 -1.91979220977153 -1.77580346355006 0.258963218768244 0.296811689203602 0.272950696972615 0.70820810697924 -2.30074529263178 0.615232516561946 0.410357100509678
HP0875 -0.322743804480753 1.12126295604304 0.127729327963783 0.712632189655601 0.888904284959984 2.93828995865034 -0.650360628076779 -0.52305300369028 1.18358137357489 0.897806916035963 -1.29402085487006 0.471370887496571 0.297769581514981 -0.522162740582682 -0.206119337385429 1.46223372625303 0.304891686375764 0.046715385172374 -0.8106079874444 -0.549760896918217 0.353856157293648 1.25035110664473 0.108143539596629 0.877330864561212 0.788304553801422 0.813231920814163 -0.401977221056966 -0.304938542328795 -0.814169039874792 -1.69463925328911 -1.27265454028771 -1.52548926284551 0.0689719628623213 -0.353012750139082 -1.70087109504230 0.654765087661738 -0.505247741538322
HP0944 1.31833049536704 0.478577620995867 0.318523966518741 0.782468039848913 0.879769380456153 2.68266451040334 0.119690792234382 -1.14099614258985 1.70753585779600 1.29506278348270 -1.28483290696577 -0.733458643524748 1.14699552603690 -0.892102133645247 0.264937720966928 1.23019522307788 1.33948296071644 -1.18330107328865 0.88329479134772 -0.706665520748841 -0.0100443285752706 0.326984952658501 1.63279714689479 1.42761823300561 0.386211855636821 -0.0262612186764771 -0.18560979097529 -0.601608276180155 0.116870463521129 -0.993633967322367 -1.03029824059466 0.353778075434408 -0.779994067293427 -0.701729945500648 -1.32713783766457 0.138728011048842 0.941111529969412
HP1101 0.462981480628355 1.18170863731348 1.30755863539701 1.24717973458237 1.51997597320274 1.68510862964760 0.107255185467395 -0.479074863407316 1.02748783041344 0.34804333208964 -1.55571068516237 1.07986470822855 0.0934335093772966 -0.276841918510083 -0.16335868324401 0.72559332634023 -0.0185948126161345 0.704497083886921 -0.160448856698726 -0.308850010508206 0.189457785371666 0.760511244883637 0.508811248716577 1.65382799428580 0.218556050824505 -0.113891631974183 -0.286298854782256 -0.0295066621609493 -1.75721617342328 -1.73611993096997 -0.984657225650398 -0.0869757364303068 -0.471072840407785 -0.332856079506798 -0.951194220379633 1.21444418594793 0.181455762372135
HP1102 -0.278986636113240 1.19305264377382 1.07237798582602 0.91243617727616 1.35012124618207 1.6901173062731 0.441230370051413 0.0207845379951865 0.238190469377336 -0.367098291122745 -2.52774930961670 0.0418547163670248 -0.244508162413868 -0.0606229693505522 0.150078814367830 -0.0108207295625708 -0.278028900732701 -0.326873405140145 -0.62185590234588 -0.239719485511177 1.04939233669311 1.08961722267571 0.289908179926393 1.16815152387983 1.25434770812826 -0.0759467354391618 0.338752684333837 0.0408969809864867 -1.76156100518622 -1.49052189249394 -0.400619029441578 -0.790417329320586 -0.180339891917815 0.428779810104418 -1.99524843803752 1.53783738076754 -0.22822666094472
HP1103 -0.305641020200855 1.48859261005442 0.975354432111552 1.69859186453187 0.778795129920664 2.31094969058809 0.515036066296995 -0.218281330338238 0.616675705464078 0.321836752177747 -2.58035294470053 0.355436632894138 0.340316686571762 -0.0217220281473510 -0.710519582833366 0.678835484789401 0.0723576378585438 -0.081361816418945 -0.0385219685055465 -0.291361070896389 -0.267001157377005 0.739315270078905 0.583915821765597 1.44155277705148 -0.0183620400757119 0.804835037475867 -0.300601038093396 0.142917387362965 -1.2976774983523 -1.56983653215507 -1.06751831544502 -0.526560235911126 -0.888598950630239 -0.103201738884599 -1.68743611466243 1.10723396392339 -0.036841974469727
HP1193 0.654113519583317 0.239278658811393 0.158528361485561 0.928822864407473 0.512404664472297 0.0944031253738706 -0.284014934643266 -0.535765861600273 1.11803189441604 0.0199861847010445 -0.276889908408634 0.0619446725272124 -0.0314723381046330 0.1965285014036 0.167236726883445 0.532196404012943 0.457779463340117 -0.43997384222355 0.425321010493459 0.236111980484890 0.819572462143111 1.51307501564732 0.608988353430646 0.550404804390336 0.831447505867498 0.414237636350697 -1.735936947345 0.454612785013614 -0.881725468770752 -2.23073043586113 -1.31001871243031 0.433237706309717 -0.478765651723215 -0.623641185160738 -1.40818574055191 0.939114568968608 0.394445896810052
HP1323 1.01581774256806 1.2250919806718 0.912383349022538 0.169098986102373 1.64364045687927 0.925613329592315 1.26839009890016 0.381981400725139 1.17938841143075 -1.63378654790625 -0.997544755050636 0.211194378824389 -0.592226259412941 0.302601517306481 -0.256665843143158 -1.51231127176557 0.32785875293969 -0.198935018838679 -0.767824183339064 0.0488264354680424 0.614107423449398 1.08798127294866 0.786097170856491 1.92026732333823 -0.154434175103977 1.25275466731769 -1.90680523784618 0.593661089841561 -1.81058719733871 -1.17434540448310 -1.21283262068609 -0.191718665800619 -0.361302962195026 -0.213367724914799 -1.28379342556034 1.69054675162666 0.172707162621403
HP1325 0.459384781715758 1.19430269901588 1.38142465657918 -0.181972156802716 1.52712266933838 2.16276596029767 1.23286982004038 -0.0169905835312596 1.18073278606282 0.361538567264722 -1.02759199556204 -0.608353105906868 0.82291560766888 -0.211254600543537 0.366538008879008 0.653648798728036 0.757208660738257 -0.673345846892593 0.172273991866731 -0.396233940272139 0.965756796648496 0.247979822025927 0.829343461172963 1.68210535938127 0.256550293364704 -0.221967689717008 -2.28173763480306 0.0158628899340520 -1.78179347337441 -1.34469943509679 -0.816187035872209 -0.510506891455831 -0.176972715188429 -0.550502424370124 -0.489080713108889 1.30071938480569 0.132278458952439
HP1367 -0.149358490567914 1.37790994157130 0.627796577672285 2.27734054248469 0.801804066476445 1.82586165261444 1.25093150379529 -0.900647580742629 -0.131722596432357 1.55779606175398 -0.527942351344531 -1.51084951783289 0.908795157565489 0.340919366400563 0.436153194732569 1.04988231064994 1.01813770120594 -0.961785347079226 0.760653646826812 0.128112910498179 1.09808708795380 1.06281529968268 0.0117160092035043 0.89351071598134 0.799452613925037 -1.50732233900578 0.138694446979513 0.18454777173196 -0.854794255990182 -1.13696856215909 -1.17341607670591 0.124585731671067 -1.3580051019914 -1.27805571524354 -0.0517732096844998 0.571361716438504 -0.259876760484069
HP1563 -0.158177339194401 0.737160427061573 0.639398341574114 0.988897797191778 1.13554092542297 2.11723520052619 0.00638883804282073 -0.0221251035576879 0.95305169917971 1.26263163655666 -1.20993444223031 -1.21563723055041 0.99378590146615 -0.488939061760302 -0.943532759276984 1.56732346965924 1.03533478779832 -1.23111622741926 0.701314329049504 -0.527229211909557 0.458538483422316 0.93268459803649 0.289084201910721 0.858548349875167 0.770562472936454 -0.0587858856154849 -0.99404317011217 -0.37977139963264 -0.20705838193813 -1.46004244426906 -2.40426125326876 0.453650379147943 -0.277121209870809 -0.372439243221081 -0.633952821900032 1.03696415588978 0.235315054892619
[+] Show/hide bicluster #22 motif PSSM #1.
bicluster 22 motif PSSM #1
Helicobacter pylori 26695
23x4
POSITION A C G T
1 0 0 0 1
2 0.052632 0.105263 0.105263 0.736842
3 0.263158 0.105263 0 0.631579
4 0.157895 0.052632 0 0.789474
5 0.421053 0 0 0.578947
6 0.421053 0 0.157895 0.421053
7 1 0 0 0
8 0.526316 0 0.421053 0.052632
9 0 0.210526 0.631579 0.157895
10 0.526316 0.052632 0.263158 0.157895
11 0.421053 0.263158 0 0.315789
12 0.684211 0 0.052632 0.263158
13 0.210526 0.052632 0.421053 0.315789
14 0.210526 0.421053 0.263158 0.105263
15 0.947368 0 0 0.052632
16 0.894737 0 0 0.105263
17 0.631579 0.315789 0 0.052632
18 0.842105 0 0.052632 0.105263
19 0.421053 0.578947 0 0
20 0.368421 0.368421 0 0.263158
21 0.315789 0.157895 0.263158 0.263158
22 0.263158 0.578947 0 0.157895
23 0 0.526316 0.368421 0.105263
[+] Show/hide bicluster #22 motif PSSM #2.
bicluster 22 motif PSSM #2
Helicobacter pylori 26695
24x4
POSITION A C G T
1 0.7 0.2 0.1 0
2 0.8 0.1 0 0.1
3 0.9 0 0 0.1
4 0.6 0 0.1 0.3
5 0.1 0.3 0.6 0
6 0.6 0 0.1 0.3
7 0 0.1 0.1 0.8
8 0.1 0.1 0.8 0
9 0.3 0 0.2 0.5
10 0 0 0 1
11 0.5 0 0.1 0.4
12 0.9 0 0 0.1
13 0.9 0 0.1 0
14 0.2 0 0 0.8
15 0.3 0 0 0.7
16 1 0 0 0
17 0.6 0 0.1 0.3
18 0.3 0.2 0.4 0.1
19 0.1 0 0 0.9
20 0.1 0.2 0.3 0.4
21 0.2 0.2 0.3 0.3
22 0 0 0.9 0.1
23 0 0.4 0.5 0.1
24 0.1 0 0 0.9
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