[+] Show/hide bicluster #18 rows and columns.
bicluster 18
Helicobacter pylori 26695
23x37
[+] Show/hide bicluster #18 rows (genes).
bicluster 18 genes
Helicobacter pylori 26695
23
[+] Show/hide bicluster #18 rows (short gene names).
bicluster 18 short names
Helicobacter pylori 26695
23
short_name
[+] Show/hide bicluster #18 rows (long gene names).
bicluster 18 long names
Helicobacter pylori 26695
23
long_name
[+] Show/hide bicluster #18 rows (NCBI RefSeq gene IDs).
bicluster 18 NCBI RefSeq IDs
Helicobacter pylori 26695
46
[+] Show/hide bicluster #18 gene upstream sequences.
bicluster 18 upstream sequences
Helicobacter pylori 26695
23
upstream
[+] Show/hide bicluster #18 columns (arrays; conditions).
bicluster 18 arrays
Helicobacter pylori 26695
37
[+] Show/hide bicluster #18 ratios.
bicluster 18 ratios
Helicobacter pylori 26695
23x37
GENES TC1-12HR FeAddBack-2-120-repeat Log-Chelate-T-3 Stat-Chelate-T Stat-iron-survival-0 TC2-22HR G27pH-5-T2-2 FeAddBack-2-60-repeat G27pH5-T1-4 G27pH-5-T2-3 FeAddBack-1-0-repeat FeAddBack-2-0-repeat Log-Chelate-T-2 Stat-Chelate-T-4 TC1-24HR TC1-60HR Stat-Chelate-T-3 FeAddBack-1-60-repeat Stat-Chelate-T-2 Log-iron-survival-2hrs G27pH-5-T2 Log-iron-survival-0 FeAddBack-1-30-repeat FeAddBack-2-30-repeat TC1-30HR TC1-36HR TC2-12HR Log-Chelate-T TC2-6HR TC-Motility_broth-T-4 Log-iron-survival-30 TC2-35HR TC2-28HR TC1-42HR TC2-42HR G27pH5-T1-3 FeAddBack-1-120-repeat
HP0210 -1.47572133029066 -0.99146044470305 1.98626923608663 0.0663172544039994 -0.129286162127466 0.328387851310234 -1.08451449722773 -0.174863657241593 -1.09685840215447 -1.68936583863813 -0.390407227885489 -0.271715834359115 1.78306957036948 0.787011395896145 -1.11964714971153 -0.841434523285712 1.32634508807999 -0.999056693888737 1.09276042562009 1.09465948791651 -0.662922667422045 -0.329637234399986 -0.107446945718613 -0.523341588635029 -0.623991890345394 -0.79205890357874 0.0910050642574853 -0.413195975442553 -0.780664529800208 1.13928745188242 0.79080952048899 0.637935005627019 0.451826900577664 -0.351476450808838 1.33868899300673 -0.463521126297736 -0.515745339449341
HP0224 -1.01181444938649 0.359717550808133 1.57967682139689 0.355693496039836 0.0854111507692083 -0.626175867424677 -0.982975390213693 0.534093257434344 -1.34044558879743 -1.49268899419800 0.548177449123384 0.387215258391497 1.98878905617377 1.21482918907128 -1.09967297849431 0.0887645297427893 1.06325645946542 0.604514215879545 0.984787391483628 1.44285895927479 0.11156750676314 -0.119144966619232 0.736637347438635 0.401970125875253 -1.22508935210624 -0.733483994579268 -0.693914122691012 0.0847404749744921 -1.09162486895772 -0.391439339274008 1.8077065916004 0.88753940124978 -0.222429039005526 -0.9501122762726 0.872113857971307 -1.34849369833402 0.222229012891312
HP0469 -1.44729815086389 -0.0117518184360681 0.721314810126151 0.06981331408824 -0.0311235374105913 0.995577568239137 -1.14958541715017 0.199297961970579 -1.15264410961983 -1.32087219545121 0.184004499622271 0.203376218596795 1.06286880257169 -0.302327603053916 -1.85308468517232 0.0198546704171013 0.434817282134519 0.365486919488857 0.688688757116428 -1.14958541715017 -0.307425423836685 0.0687937499316862 -0.315581937089116 0.296156556843195 -0.259505908478654 -0.401225326239639 -0.447105713284563 -0.145314722944623 0.271687017085903 1.16584478238363 0.693786577899197 2.09262860069108 1.45132274621871 0.632612728505966 2.12627421785736 -1.47890463971706 0.418504255629657
HP0515 -1.30116621496789 -0.471140257392934 1.24491482961041 0.545169934978679 0.180854564395351 -0.238874470969259 -0.634433716376076 -0.230031864887139 -0.823665486533435 -1.12254557210908 -0.187587355692965 -0.0661488988318561 1.64754815988292 0.601173106832103 -1.51928383166018 -2.00857470153746 1.05332503116449 0.202666326064580 0.66307134940694 0.970794041064702 0.736759733424604 0.223299073589525 0.237447243320917 -0.369745040984629 -1.12961965697477 -1.02999296178289 -0.304899263049085 0.348864079955624 -0.136300240416672 0.496830355063092 1.02208115634100 0.727327620270343 -0.48764645541289 -1.29291311595792 0.633006488727734 -0.498847089783575 0.0971445601512859
HP0520 -1.68411039984609 -0.463071604304411 1.59322214670073 -0.0831440654038539 -0.183433223071246 0.380967802925536 -1.21707038092787 -0.525294804317027 -1.40447201861292 -1.33273232918661 -0.124138173647459 -0.256636987791970 1.36043417488882 0.670122673572396 -1.15484718091525 0.522251068836533 0.418301722933106 -0.0157966018607878 0.191370052298861 0.49150548765383 -0.258833100733592 -0.252244761908726 -0.166596357185479 -0.0816799901094394 -0.51651035255054 -1.06627062560318 -0.5933743055073 -0.220035105431608 -1.07578711501687 1.17669272543981 0.671586748866811 1.55515618904595 1.06981522894755 0.531767558250228 2.13493000563408 -0.743442023184784 -0.572877251385497
HP0542 -1.05508482746749 0.185714074782579 2.56762824654382 0.369341819301617 0.0519281466329945 -0.765652525392247 -0.49895508692412 0.828411180599213 -0.880201261258885 -0.80412690995814 -0.345931966491588 0.201453595741354 2.07008450068033 0.0667932497607261 -1.09880571901964 0.959573855255668 0.350104627018671 0.36147205882223 0.316876749439035 0.576578845258818 0.61767648331784 -0.103718227292666 0.342234866539283 0.427053396150458 -1.20548469440689 -1.18974517344812 -0.954526776897543 -0.160555386310464 -0.934415166783553 0.70686710208423 0.629918332952443 1.21140619059606 0.0904025311988882 -0.352052891308889 0.88787159311014 -1.16788472767204 0.0799095172263717
HP0626 -1.06748078626437 -0.237602178005650 2.09821596910213 0.266219796153638 0.245035325576556 -0.684318188000632 -1.07024397807877 0.136349780876746 -1.01498014179073 -1.16879781945911 0.58122366299546 0.189771489288517 1.76479082349763 0.352799806338232 -0.650238822289674 -0.77181926212336 1.12096713074197 0.461485351038042 0.96530732519733 2.11479511998854 -0.571027323610152 -0.167601318707468 0.537012593965028 0.971754772764268 -0.576553707238956 -0.590369666310965 -0.820635650844461 0.0156904049811947 -1.22774591149968 0.6392506910979 0.719383253715557 1.14307266525719 -0.053389390378854 -0.197075364727755 1.16241500795800 -1.20564037698447 0.135428716938612
HP0829 -1.15770891885665 0.360468345183674 1.67438521387439 0.660683623930071 0.585629804243472 -1.11400669473534 -1.22896254514140 0.439322358272126 -1.43227289214054 -0.69978561393335 0.146707466329435 0.181859255296577 1.61928240954752 -0.252312840865143 -0.896445622479249 -2.13340857478244 0.480174437342048 0.384219553945256 0.538127386720308 0.768039087532422 0.189459642100283 0.433622068169347 0.389919844048036 0.226511527768351 -0.763438853414389 0.643582753621732 -1.80469184552215 0.326266604566996 -1.77714044335871 1.13095755740940 0.971349434531564 1.30006616379186 -0.271313807874409 -0.863193930213034 1.35041872636641 -1.11780688813719 -0.00910046314654302
HP0830 -1.11750650610422 0.235452970328365 1.37604131914328 0.762754940852243 0.434356660584916 -0.851265629042064 -1.24907300955517 0.561779337155519 -1.4718037043737 -1.49873857909594 0.513089371311467 0.265495715210865 1.79456783405810 0.0893830727962097 -2.43006367045344 -0.97247256529215 0.874638266621553 0.664339052444053 1.26208607993379 1.09944087488026 -0.312568134597238 0.268603585371123 0.862206785980518 1.11601618240164 -0.507327997973444 -0.294956870355772 -1.00976700721525 0.48511853986914 -2.05193946762197 0.828020214217674 0.860134872540346 1.22479163801069 -0.146815059383445 0.11113816391802 0.95440693406819 -1.51738580005749 0.830092127657846
HP1099 -1.13155936179617 -0.0679807096091963 2.15517294875871 0.59637501009499 0.264197150242897 -0.754430828248499 -1.09651307383013 0.167438920423595 -1.32050456648269 -1.40354903144571 0.136963887409641 0.315242830541269 1.78033004268708 0.315242830541269 -1.03403925615152 0.425714825216851 0.87217405887127 0.396001668028246 1.24777884076825 1.27596824630615 -0.388730432081057 0.163629541296850 0.889697202854293 0.663420082725688 -0.637863826970127 -0.58986564997315 -1.22907946744083 0.215437097420571 -1.37459775008245 0.163629541296850 0.987217308498944 1.44967593448569 -0.482441158598964 -0.672910114936174 1.18911440221639 -1.41726279630199 -0.125121396510359
HP1100 -1.35762442263234 -0.108733820387278 1.72213980250398 0.355020889913056 0.0361374894731495 -0.398476440108132 -1.28019320529315 0.195162892825688 -1.68899672909470 -1.5532839503174 0.610627166505878 0.0594501140483907 1.60141371095363 0.598138260483428 -1.15613673880347 0.753000695161816 1.00028103440634 -0.0512848526840049 1.30084737267998 1.05523222090512 -0.0479544777446847 -0.0146507283514830 0.995285471997358 0.597305666748598 -0.694879809707627 -0.74816580873675 -1.05122992821489 -0.0304700093132538 -1.71397454113960 0.0677760513966911 0.924515004536804 1.46570093217633 0.0752693950101615 -0.630770092125714 1.59225517987050 -0.206147287362393 -0.231957693142124
HP1458 -0.837143460180636 -0.0696813262635369 1.08022332166732 0.179782523847864 0.0241253281171965 0.254003173467785 -1.25515003547061 0.0390725422767639 -1.51853025738574 -1.78861095461379 0.165350730866213 0.179782523847864 0.753446294868503 0.078759972976305 -0.858791149653113 1.72346895170664 -0.0485490579689760 0.39007436443764 0.158134834375387 -0.568093605308423 -0.0609191662389629 -0.074320116864782 -0.183589406582999 0.186482999160774 -0.402643407197349 -0.52325196282972 -0.674785789137059 0.155042307307890 -0.998985710046297 0.795710831457625 0.620467630966145 1.71676847639373 0.645723268684034 0.355025724339344 2.27548503325480 -1.60975980587690 -0.0954523851593427
HP1460 -1.10145948691689 0.190762767909335 1.35848822321996 0.0721727508524975 -0.155011189869413 -0.303135119220099 -1.35136182171099 0.158048280445380 -1.28184353585009 -1.53174587064419 -0.204991656828233 -0.43762801212747 1.18355658886408 -0.135473370967329 -0.789308752364988 -0.195449931317913 0.0462737816101997 -0.120024862998239 -0.0614114062919859 0.347065319126009 -0.404004788900627 -0.257698331075717 0.276638297502217 -0.184090734281818 -0.729786559895847 -0.741600124813386 -0.266331320823149 -0.137745210374548 -0.396280534916082 1.77923288143693 0.228020934187728 1.66564091107598 0.58015604230669 -0.389465016694425 1.62883711267903 -1.59717484557210 -0.099123940451823
HP0470 -1.36671251982248 0.286454565840495 1.63238886620453 0.267352009241597 -0.0605752123728218 0.317496220313704 -0.738715971633707 0.420968401891069 -0.967150710962197 -1.15658439723460 0.517277124743848 0.114531556450411 1.70163563387553 0.717853969032278 -1.36114094081447 -0.335174463481983 1.11980359746743 -1.11121582531222 0.942309009069332 0.662138178952159 -0.495954314856043 -0.07967776897172 0.916838933604134 0.396294266284159 -0.624896571898605 -1.33248710591612 -0.390890253562103 0.0492644880708427 -1.36114094081447 0.824509910042793 0.719445848748853 1.22486765876137 0.910471414737835 -0.101964085003768 1.65547112209486 -1.39775417429569 -0.150516416359301
HP0779 -1.19052157889719 0.535525058988524 1.94681533170351 -0.0644437526004553 -0.261403210950373 -0.265569661030852 -1.81094387269943 0.0507017768964196 -2.01964514491252 -1.22309564316276 -1.26513891215668 -0.645474154732712 1.71841811365543 0.300310013536026 -1.30983355847455 0.764679813414869 0.63211094721781 0.00805247879987969 0.570750500578028 -0.00611345147374891 -0.242843569682784 -0.346247285316491 -1.45187162939997 -0.798723764056513 -0.722364097127006 -0.429955055115205 -0.289053288757188 -0.0447478067654635 -0.56366022587967 0.741953722066802 0.8529328014832 0.878310270155206 0.670745302509525 0.00487082601115026 1.23965512258948 -1.22839839781064 1.26010860480274
HP0780 -1.67702449268460 0.18702802710256 1.41115816178772 0.0190881971815141 -0.101096230866249 0.007945270077748 -1.18196015993156 0.782378703789491 -1.22334817488840 -1.38094100107024 0.17349732990513 -0.116218774792788 1.15089122157833 1.07687034867474 -1.27508319358446 -1.02038771692695 1.07527850194563 0.869134350525956 1.17476892251497 0.717908911260559 -0.819019105694607 -0.0668715261903957 0.662194275741728 1.17636076924408 -1.10157190011153 -0.96626492813723 -0.826978339340154 0.0748028327003445 -0.967060851501785 0.865154733703182 0.806256404726133 1.0283190234369 0.164742172895028 -1.06973496552934 1.28858596364629 -0.947958690752471 0.880277277629722
HP1045 -0.972065605818664 -0.070087909715459 2.23273367083345 0.366930173464374 -0.0063561059184 -0.492978253137324 -1.59870935152768 -0.0267628411243549 -1.46998994484396 -1.82506713742758 0.0510967024306729 -0.0499951242819035 1.96524846474924 1.08304960430719 -0.800649030088643 -0.453420581815011 1.45790563255196 0.330825949638454 1.53607912587939 2.02113152423632 -0.149203252360084 -0.0801343024322368 0.430975927033833 0.0131087799703569 -0.339770764206463 -0.572093595781949 -0.767370354214317 0.0344573644935097 -0.992786290797018 -0.0531346220058965 1.21647825757690 0.802378507782211 -0.116866425802956 -0.574605193961143 0.70787962629002 -1.35508432814582 -0.0650647133570701
HP1098 -1.14960900056061 -0.319490730651819 1.49482995839082 0.259736594707282 0.111299508542833 -0.111356120703841 -0.121843523530677 -0.150078838833698 -2.08782819191526 -2.07088700273345 0.254089531646678 -0.336431919833631 1.02451027777194 0.118560018192181 -1.30772676625753 -0.851928104937344 0.702627683317514 -0.177507430842346 0.686493217430074 0.896241273966795 0.938997608568512 -0.110549397409469 0.421887976876055 0.0459549216987001 -0.678482596647362 -0.617171626275089 -0.248499080747082 -0.175893984253602 -0.609104393331369 0.840577366655127 0.680039431075097 1.99177150772398 0.539669577854368 -0.157339348483046 1.92804036746859 -1.97569365399755 -0.0282636213835245
HP1237 -0.429373582478443 0.783878414371863 1.56911032522533 0.438291826418858 -0.120776384673313 -0.565705906166326 -1.68489916806918 0.82403832367527 -1.84025460669025 -1.70814964187641 0.444632864729922 -0.0298881688813909 1.10727136823614 0.689819679424409 -0.921860891304438 -1.19980973727276 0.585192547291848 0.582022028136316 0.624295616876744 0.905414982000596 -0.193698325250552 -0.390270512893546 1.2214100578353 0.549259996862483 0.224810203279692 -0.83625687410507 -0.808779041423791 -0.0954122314290555 -1.11948991866594 0.932892814681874 -0.085900673962459 1.2805930820719 0.132865147769260 -0.487499766996532 0.928665455807832 -1.88041451599366 0.47105385769269
HP1395 -1.68752793998742 -0.645357015087453 1.95747783217515 0.51174652425007 0.461625534495345 -0.104395987734735 -1.22088424227102 -0.125999862629013 -1.44297207618419 -1.36606228156056 -0.305744101749405 -0.058595772958866 2.13376545131245 0.861729297537372 -0.984969928425502 0.327681510150823 0.753709923065983 0.552361809051313 0.745068373108271 0.871235002490854 -0.329940441630996 0.256820800497591 0.236945235594855 0.706181398298571 -0.896826118856848 -1.14224613765584 -0.604741730286211 0.408047924757536 -1.48358736098544 0.408047924757536 1.02073381675926 0.634456533649569 0.520388074207781 -0.0352635880730459 1.73884661824505 -1.50346292588817 -0.569311375459595
HP1469 -1.18941003853967 0.075738395519612 0.978651100222003 0.401096267372186 0.164364214360624 1.10772360148710 -1.65573649472325 0.222655021383572 -2.17083689147705 -2.08518509340251 0.140572048228809 0.232171887836298 0.625337433164546 0.88229282738815 -0.884275507899136 -0.654681104727118 0.913817447512806 0.559908976302054 0.215517371544027 1.27724278517628 -0.327538820414657 0.0721695705998398 0.402285875678777 0.50756621081206 -0.895576786811748 -0.341219315940451 -0.033110764533443 0.0109047428104153 -0.320401170575113 0.681843827727607 0.194699226178689 1.94996628255336 1.48185541390990 -0.0212146814675353 1.77687827394441 -2.29039252628942 0.44570657886934
HP1501 -0.866607688329436 0.33632317348471 1.04602405865861 0.549961752374003 0.333895462360968 1.00030216582814 -1.68798328519547 0.386495870042044 -2.37502553321445 -2.01936585358625 0.655567186256779 0.310427588164795 0.838454757578674 1.06827807729291 -0.73996209137423 -0.426382737890892 1.04764253274111 0.422102299856926 0.452853307424324 1.49434137950963 0.287364332489247 0.262682602731203 0.717069201391575 0.448402503697464 -0.142340536413082 0.0174837792332645 0.128349253884148 0.316092247453527 -0.565571508985432 -0.050087513710887 0.416437640568195 1.21232227063494 1.17873893342317 0.265514932375569 1.08729514776223 -2.34225143304393 0.327421566030989
HP1512 -1.00749853367527 0.343947860363571 0.92936252435142 0.716439966797311 0.424222111947189 1.09284789038147 -1.91156281827858 0.603860223722724 -2.69913154265688 -2.21112283028574 0.321921388892456 0.307726551722182 0.692945063894788 1.05222128744586 -0.846950030508033 -1.15140481395322 1.20640658774366 0.575960026525979 0.53973871788459 1.09284789038147 0.150604388561563 0.328284591761889 0.732592712542795 0.407090411914099 -0.437747138289101 0.151093865705366 0.0884407912986396 0.364016423259475 -0.154829349171228 0.0850144512920217 0.393385051887628 1.34590757372739 1.31409155938022 0.0159981740158623 1.21228031346929 -1.35453782863128 0.456527603438157
[+] Show/hide bicluster #18 motif PSSM #1.
bicluster 18 motif PSSM #1
Helicobacter pylori 26695
20x4
POSITION A C G T
1 0.9 0 0.1 0
2 0.8 0 0.2 0
3 0.8 0 0.2 0
4 0 0 1 0
5 0 0 1 0
6 0.2 0 0.5 0.3
7 0.2 0 0.4 0.4
8 0.9 0 0 0.1
9 0.3 0 0.1 0.6
10 0.4 0 0.3 0.3
11 0 0.5 0.1 0.4
12 0.3 0.1 0.4 0.2
13 0.9 0.1 0 0
14 0 0 0 1
15 0 0 1 0
16 0.6 0.1 0.2 0.1
17 0.7 0.2 0 0.1
18 0.6 0 0.1 0.3
19 0 0 0.8 0.2
20 0.6 0 0 0.4
[+] Show/hide bicluster #18 motif PSSM #2.
bicluster 18 motif PSSM #2
Helicobacter pylori 26695
9x4
POSITION A C G T
1 0 0 0 1
2 0.333333 0.555556 0.111111 0
3 1 0 0 0
4 0 0 0 1
5 0.222222 0.222222 0.555556 0
6 0 0 1 0
7 0.333333 0.444444 0.111111 0.111111
8 0 0 1 0
9 0 0.888889 0.111111 0
|