[+] Show/hide bicluster #9 rows and columns.
bicluster 9
Helicobacter pylori 26695
20x35
[+] Show/hide bicluster #9 rows (genes).
bicluster 9 genes
Helicobacter pylori 26695
20
[+] Show/hide bicluster #9 rows (short gene names).
bicluster 9 short names
Helicobacter pylori 26695
20
short_name
[+] Show/hide bicluster #9 rows (long gene names).
bicluster 9 long names
Helicobacter pylori 26695
20
long_name
[+] Show/hide bicluster #9 rows (NCBI RefSeq gene IDs).
bicluster 9 NCBI RefSeq IDs
Helicobacter pylori 26695
38
[+] Show/hide bicluster #9 gene upstream sequences.
bicluster 9 upstream sequences
Helicobacter pylori 26695
19
upstream
[+] Show/hide bicluster #9 columns (arrays; conditions).
bicluster 9 arrays
Helicobacter pylori 26695
35
[+] Show/hide bicluster #9 ratios.
bicluster 9 ratios
Helicobacter pylori 26695
20x35
GENES TC2-12HR Stat-iron-survival-60 TC-Motility_broth-T Log-iron-survival-2hrs Log-Chelate-T-4 Stat-iron-survival-2hrs G27pH-5-T2-3 TC2-22HR Stat-Chelate-T-2 Stat-iron-survival-30 G27pH5-T1-3 TC2-28HR Log-Chelate-T-3 Log-iron-survival-30 G27pH5-T1 TC-Motility_broth-T-3 TC2-35HR Log-Chelate-T-2 TC1-48HR Stat-Chelate-T-3 TC-Motility_broth-T-6 FeAddBack-1-120-repeat TC-Motility_broth-T-2 TC2-18HR G27pH5-T1-4 TC1-12HR TC1-30HR Stat-Chelate-T-5 Stat-Chelate-T-4 TC1-24HR TC2-6HR Stat-iron-survival-0 TC1-42HR TC1-60HR TC-Motility_broth-T-4
HP0053 0.791044411140968 -0.410107182186021 0.331439782183052 0.176950831272829 0.366199796137853 0.443444271592965 -0.150372633468208 0.959051145255836 0.0292207719649272 -0.0798870496154183 -0.92861072367846 1.86860484373978 0.648142131549011 0.443444271592965 -0.102094836308763 0.318887554921597 1.27189127084904 0.287024208796363 -0.274929350139576 0.345923121330886 1.14540344229129 -1.38145646103405 0.250333082955185 1.37037797705431 -1.40173313584102 -0.614805042142068 -2.18962678548316 0.488825400922843 -0.0335403643423512 -0.982681856497038 1.45148467628217 0.312128663319274 -1.15841303815742 -0.399486066810944 0.693523260878889
HP0061 0.289275606631956 0.0891911065278767 0.602741323461681 -0.162026099158356 0.496029590072838 -0.0316006472386602 0.155144886191814 0.862110119892895 -0.336914773323404 0.104012180609660 -0.177588226944229 -0.628889932734542 0.520484362307782 0.387835749275818 0.0358352398334555 0.103271126905571 NA 0.711676217962791 -1.32992673680291 -0.0256722176059467 0.75762154761632 0.259633458468389 0.129949060252782 -0.519213984529343 -0.323575806649798 -0.454001258569495 2.21230996874339 0.446378991898863 0.332997775173218 -0.69410265869439 1.46829204983785 0.516779093787336 -2.50375580408018 -1.02164839590181 0.0476920990988824
HP0065 0.913998678310549 -0.405241747627356 0.386054646887771 0.162979704033076 0.156783177842667 0.389772562602015 -1.61356435475695 0.54468571736222 0.0291347383202585 0.0452457064153198 -1.14696593261922 0.87743917378714 0.209453650461137 0.204496429508810 -1.06145387119158 0.159881440937871 -0.795003245004031 0.161740398794994 0.407742488554199 0.0155023807013605 0.908421804739181 0.068792505938871 -0.133214247868436 0.811136343549772 -2.25676377332132 0.00930585451095234 -0.767738529766235 0.425092761887342 0.405883530697077 -0.531031229292642 NA 0.394110130935301 -0.00308719786986406 0.26460273355577 0.399067351887628
HP0358 0.349014554999298 -0.423234663830587 0.616062715765456 0.0535371834011399 -0.146399397696036 0.593692189209129 0.0339629726643536 -0.327227820693014 -0.376163347534980 -0.290409662402393 -1.70441336181692 1.20356866945100 0.93064824546381 1.09889324727286 -0.168769924252363 1.09236851036059 0.557806136191688 0.548019030823295 0.121394447288667 -0.124494923776297 2.50637220977512 -0.529587875500459 0.588565610206638 0.505142188256999 -0.803533615288152 -0.721974403884875 -0.177811345402211 0.678979821705127 -0.360317557890916 -1.18728135625648 0.66891308475478 -0.257319925204491 -0.90205714266331 0.567686452087398 0.584837189113915
HP0414 1.28577331524665 -0.67691819387865 0.629892798325837 0.219039342443366 0.248739592266195 0.409615945473187 -0.363828060329658 1.03703372298045 -0.112613447244894 -0.0519754371899511 -1.66568901089701 2.24731890326075 0.884819942638454 0.575442340317316 -0.33165278968826 0 1.07168401444042 0.607617610958715 0.725181099840747 -0.0210376769578373 1.40828684576582 -0.52470441353665 0.231414446536211 1.45407473090935 -1.59762593838636 -1.50481265769001 -1.49862510564359 0.69053080838078 0.407140924654617 -1.30681099220449 1.13108451408608 -0.00742506245570731 -0.612567652595853 0.475203997165268 0.00618755204642276
HP0437 0.7273236010833 -0.743001011267785 0.355944250087618 -1.10992994855319 -0.0109846871977845 -0.742540623642583 -0.59475619595298 0.644607291088807 0.282282230055417 -0.846127839312866 -0.649081935726728 1.05143648922499 0.690185665983731 0.79193133115321 -0.337859901090678 0.563118681428184 0.823084227125162 0.705838845240574 0.0732662482140458 -0.0961563978600172 1.53868005922965 -0.00914313669697942 -0.0142074005741932 0.836588930797731 -0.668878603610382 -0.181788496147451 -1.46074531895655 -0.0837259319795832 -1.05698537165504 -0.173808443977297 0.853623272930178 -0.0105242995725832 -1.44140903869809 -0.743921786518187 1.1906270145775
HP0504 0.300007098996026 -0.786452246189855 0.308581186274833 -0.426340580479992 0.418819451288056 -0.358972751860799 -0.891791032758047 1.01165634313695 -0.0245833479873543 -0.216887876954867 -1.23965400235533 1.60204349576332 0.295107620550994 0.413919972843024 -1.03142616844146 -0.0245833479873543 1.38401670495939 0.378398754116541 1.04595269225217 -0.116448568831707 1.29460122333756 -0.0662289147701277 0.0501336982993861 1.27990278800246 -1.71122880268968 -0.85871955325408 -1.55077088361487 0.41636971206554 0.564578935027763 -1.43808287937913 1.29460122333756 -0.132371873778062 -0.520655540546861 0.432293017011895 0.242438227266898
HP0533 0.570375093767019 -0.368292781002205 0.666788654547579 -0.325543371976862 0.120596737106766 -0.0967885555965716 -0.0799616605546814 0.58219939839105 0.0846690422875952 -0.0226592612228393 -0.512458341225966 0.921465984911322 0.597207169644628 1.10383314468964 -0.298256515152175 0.557186446301754 1.02060823137435 0.434850371537742 -0.100881584120275 -0.246411487185271 1.55406628229698 -2.16028130613899 0.105134184906110 0.655419130870626 -0.852179708693316 -1.11231441042200 -2.49196821020797 0.33161509655101 0.319790791926979 -1.49614952975592 2.04007552107445 0.289775249419824 0.17744435549153 0.0896716327054545 0.903274747028197
HP0592 0.580637104277173 -0.541655561623695 0.840967210642075 0.332061032815033 -0.131570343905070 0.571495077130579 0.114393719800901 0.834437191251651 -0.750616182117263 -0.649183214252675 0.586383521340746 1.27064248653197 0.527090945275696 0.820941817844775 -0.809386356631078 0.81963581396669 0.63635993640879 0.140949131988626 -0.0310951122177453 -0.0336200530487102 2.10039028374185 -2.92685397763255 0.562788384610015 0.790903728648825 -0.712306735026774 -0.197305872435336 -1.24881312814401 0.830954514243425 -0.277842778250567 -0.750964449818085 1.17008018791944 -0.313540217584883 -1.00964028460408 0.292010247220433 0.728215542500755
HP0670 1.01860799400486 0.169264108230370 0.156134154440620 -0.0596894609784056 0.593525740061686 0.464688068499759 -0.613609386483509 1.60207031553690 0.547570901797559 0.233272632955404 -0.868822863271786 1.35506305986722 0.594346362173546 0.442531271479555 -0.991916180050698 0.148748555433885 1.20406859128509 0.427760073466085 0.814273088151868 0.499974819309713 0.99234808642536 -0.154881625954097 0.264456273206062 1.28695142458289 -1.01243173284718 -0.749832657052171 -1.23646156938480 0.087201897044429 0.475356155953931 -0.815482426000924 1.07769278605874 0.240658231962139 -0.572578280890538 0.209474591711481 0.119206159406946
HP0766 0.346784324605212 -0.164508447155753 0.78852684444874 -0.321570631615529 -0.520051303361044 0.427242811788001 -0.095204245657835 0.928365499542171 0.139773904983032 -0.739856344798224 -0.745597521253675 0.9619923902098 0.576923483662201 1.36797558241653 0.318160459134475 0.757360457976305 1.10511171756349 0.588405836573098 -0.246525253662163 0.077851216070691 1.62673860694426 0.0093671826378388 0.563390710588642 0.999720121202749 -0.681214328146141 -0.760770630457359 -1.96354709787388 0.640896592737201 0.0639083589646004 -0.477402563977711 0.362039450615404 0.262799114742648 -1.36195382214935 -0.61108995858316 1.19122936439522
HP0769 0.6103915545003 -0.129534049813759 0.562945943231307 0.31329165536351 0.199196256835693 0.634114360134796 -0.728252477732005 1.34918750140319 -0.118237475702094 0.0161917562267199 -0.948535672909473 1.40792968678385 0.541482452419143 0.660096480591626 -0.908997663518645 0.266975701505683 -2.34027360346660 0.392367674145165 -0.413078060016551 -0.0640139199661018 1.46893118698684 -0.754234598188834 0.301995081251845 1.64063911348415 -1.56984724905105 -0.0120496790524427 -0.559933523468196 0.759506332774278 0.252290155160519 -1.17446715514277 2.01794468881376 0.248901182927019 -2.51650015960858 -1.14735537727478 0.309902683130010
HP0904 0.88594619164117 0.0131586846092309 0.263820840608023 -0.260657003871377 0.206440347066131 0.100739437910014 -1.14149791350569 1.21311567236248 0.0866459833558647 -0.295890640256750 -0.643193627483992 1.63793265963755 0.555756684943965 0.467169256317886 -1.13545786155391 -0.00395479592080710 1.21210899703719 0.29502777569221 1.06010102291744 -0.0291216790532159 0.806418840942758 -0.212336588257152 -0.0623419647879956 1.13962837361585 -1.48880090073293 -1.26028560189066 -1.90556448540562 0.502402892703259 0.389655256270067 -0.716680926230625 1.33291003607275 0.299054476993395 -0.424745081894683 0.387641905619474 -0.0271083284026232
HP1008 0.978229341302827 0.047043944485078 0.38416396885167 -0.382808235581206 0.590879399265568 0.0277247453809754 -0.448493512535155 0.689407314696492 -0.0524499309010506 0.252793414943771 -0.365420956387514 1.49115407751675 0.657530636174722 0.796628869724262 -0.100747928661307 0.573492120071876 -0.207003523733872 1.19653629117919 -1.10921012189547 0.227678456108438 1.21392357037288 -0.970111888345927 0.412176807552618 0.637245477115415 -1.23092107625131 -0.286212240060693 -0.678391981873977 0.438257726343157 0.224780576242823 -0.268824960867001 1.12505525449401 -0.100747928661307 0.270180694137464 0.571560200161465 0.621790117832132
HP1097 -0.0716469139458787 0.0168616104785105 0.635286556777127 -0.370079502710165 0.450326435223596 -0.717305252375077 -0.505111738690964 0.779396590134786 0.0906187141655015 -0.146538742304977 -0.848933314339553 1.54533574380739 0.670463021612462 0.970030335048856 -0.570925769673202 0.48550290005893 1.01201514791684 0.465077855960994 0.0928881635097166 -0.088667784027492 1.62022757216648 0.0985617868702544 0.377704056208713 1.08917642562015 -1.42423872309808 -0.897726475240178 -1.69884209374811 0.280117734407463 0.126929903672943 -1.48437913071978 1.39895626110551 0.330045619980195 -1.02935453720465 -0.193062453861387 0.377704056208713
HP1236 0.698076228337289 0.0679182362742647 0.393327691192056 -0.409865487216143 0.673971824269304 0.404519021652192 -0.685344390850252 1.22234701681595 -0.0207515358329641 0.175527183006339 -3.25246342409060 1.32392986253103 0.75317200906411 0.264196955113567 -1.07618008538114 0.309823148527967 0.570667235406513 0.588745538457502 0.853033111631475 0.149701035790641 1.13367724470872 0.464780031822153 0.178970669301765 1.19393825487869 -1.34132853012897 -1.22424999608448 -0.942744991433372 0.729928476569983 0.23320557845473 -1.05551916760859 0.7256241187007 0.0489790616494197 -1.00386687317719 -0.0569081419349409 0.318431864266533
HP1254 0.786572426852313 -0.750416908028336 0.787654813707863 -0.286072946997492 0.147964182077959 -0.329368421219482 -0.106396728976233 1.05175720646200 -0.11830298438728 -0.320709326375084 -0.741757813183938 1.40894486879342 0.560353574042415 -0.0815018312985884 -1.15198243143729 0.199918751144347 0.98031967399572 -0.830513535339018 0.186930108877750 -0.194070064275763 1.57887960511473 0.270273896755081 0.337381881799166 1.56372618913704 -1.58060762623500 0.00292434343429233 -0.564246368873778 0.107915868422618 -0.402970727396865 -0.328286034363932 1.03876856419541 0.416396122254298 -0.0620188678986928 0.435879085654194 0.591742792853358
HP1366 0.573141756544758 -0.479852888465216 0.156353248001428 0.0524185821430163 0.67707642240317 -0.527095918400858 -1.25463857940974 1.00252840640426 0.267636829627607 -0.269883866529029 -1.71552058255967 0.692824099048384 0.635082618015933 0.400967158557085 -1.59268870472700 -0.155450749573808 0.939537699823403 0.892294669887761 1.63453516243218 0.105960682736744 1.35527636325705 -1.21894384568059 -0.0284194913024154 0.773662172493816 -1.83730261528266 -0.771709828956514 -0.681423149523954 0.0461195114849307 0.49650306353805 -0.85674728284067 1.50330452372206 -0.432609858529574 0.435612047176556 1.36157543391514 -0.147051988696361
HP1367 1.09808708795380 -0.259876760484069 1.25093150379529 -0.131722596432357 1.04988231064994 0.124585731671067 -1.21926940145835 1.29678482854774 0.0117160092035043 -0.149358490567914 -0.0517732096844998 1.06281529968268 1.55779606175398 1.01813770120594 -0.854794255990182 0.571361716438504 0.128112910498179 0.908795157565489 0.0657994178858783 0.243334085517149 1.82586165261444 -1.51084951783289 0.89351071598134 0.799452613925037 -1.13696856215909 -1.3580051019914 -1.40738560557096 0.627796577672285 0.760653646826812 -0.900647580742629 0.436153194732569 0.128112910498179 -0.884187412882776 0.138694446979513 0.370312523293157
HP0669 1.09729541136881 -0.751620909022082 0.75338619492292 -0.620094500224596 -0.59745470854634 -0.765096975497234 -0.239530382966297 0.711879910179452 -1.09984246674002 0.215421621234843 -0.911177536087885 0.866046110655194 -0.764018890179222 -0.769409316769283 -0.531152461488591 1.97539590288973 1.56626252470410 -0.540316186691695 -0.829782094577965 -1.60384735291071 0.50812178507515 -0.209343994061956 1.28326512872591 0.598141909129167 -0.662139827627071 -0.905787109497824 -0.76294080486121 2.65782390919144 -1.82323771512619 -0.904169981520806 1.06710902246447 0.270403972453464 -0.546245655940762 -0.702568027052528 1.76624735119536
[+] Show/hide bicluster #9 motif PSSM #1.
bicluster 9 motif PSSM #1
Helicobacter pylori 26695
19x4
POSITION A C G T
1 0.818182 0 0 0.181818
2 0.454545 0 0 0.545455
3 0.909091 0.090909 0 0
4 0.909091 0 0.090909 0
5 0.727273 0 0.272727 0
6 0 0 1 0
7 0.818182 0.090909 0.090909 0
8 0.090909 0 0.909091 0
9 0 0 0.545455 0.454545
10 0 0 0.636364 0.363636
11 0.363636 0.181818 0.090909 0.363636
12 0.272727 0.090909 0.090909 0.545455
13 0.454545 0 0 0.545455
14 0.636364 0.090909 0 0.272727
15 0.545455 0 0 0.454545
16 0.090909 0 0.181818 0.727273
17 0.090909 0 0.636364 0.272727
18 0 1 0 0
19 0.181818 0.090909 0 0.727273
[+] Show/hide bicluster #9 motif PSSM #2.
bicluster 9 motif PSSM #2
Helicobacter pylori 26695
12x4
POSITION A C G T
1 0.666667 0.083333 0.25 0
2 0.083333 0.916667 0 0
3 1 0 0 0
4 0.083333 0.833333 0.083333 0
5 0 0.75 0.166667 0.083333
6 0 0.916667 0 0.083333
7 0.083333 0 0 0.916667
8 0.360688 0.014312 0.014312 0.610688
9 0.777355 0.014312 0.097645 0.110688
10 0.860688 0.014312 0.014312 0.110688
11 0.527355 0.014312 0.180979 0.277355
12 0.527355 0.014312 0.430979 0.027355
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