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[+] Show/hide bicluster #113 rows and columns.
bicluster 113
Methanococcus maripaludis S2
14x57
[+] Show/hide bicluster #113 rows (genes).
bicluster 113 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #113 rows (short gene names).
bicluster 113 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #113 rows (long gene names).
bicluster 113 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #113 rows (NCBI RefSeq gene IDs).
bicluster 113 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #113 gene upstream sequences.
bicluster 113 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #113 columns (arrays; conditions).
bicluster 113 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #113 ratios.
bicluster 113 ratios
Methanococcus maripaludis S2
14x57
GENES H_vs_Leu_3000070032A.4 H_vs_Leu_3000070239A.3 H_vs_Leu_3000070259A.2 H_vs_Leu_3000070260A.1 H_vs_PO4_3000070253A.1 S2_vs_S40_BR1_3000069792A S2_vs_S40_BR1_3000069792B S2_vs_S40_BR1_3000069793A S2_vs_S40_BR1_3000069793B S2_vs_S40_BR2_3000070262B S2_vs_S40_BR2_3000070263A S2_vs_S40_BR3_3000070265B S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272A S2_vs_S40_BR4_3000070272B leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070030B leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR3_3000070251B leu_vs_PO4_BR3_3000070252A leu_vs_PO4_BR3_3000070252B leu_vs_PO4_BR4_3000070257A mma_0070m_0.2 mma_0334m_0.402 mma_0649m_0.885 mma_0783m_1.23 mma_0849m_1.4 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070037B.3 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_PO4_vs_slow_PO4_3000069786A.2 rapid_PO4_vs_slow_PO4_3000069786Alow.2 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069787B.2 rapid_PO4_vs_slow_PO4_3000069787Blow.2 rapid_PO4_vs_slow_PO4_3000069789A.3 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069789B.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000069790Alow.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023A.1 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024A.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024B.1
MMP0056 -0.425434542969402 -0.68588078530512 2.00911142977081 -1.28696419136668 -0.538749604956122 -1.0146088591233 -1.43789121552639 1.53991609181798 1.14129678593213 -0.554785646351922 0.251525178520546 -0.704882788969287 0.62499777821973 -0.336898071082198 -0.251525178520546 0.794354946317507 0.789944373070952 -1.27796958548806 -1.12809376972138 0.596032791812415 0.674229079986289 1.41976884639799 1.32022907249996 -1.35608415401203 -1.37120451417644 -0.747509038614528 0.0971175047034589 0.187683685754103 0.106976499907370 -0.105013236793171 -0.0971175047034589 1.76149199766258 -1.77353158440794 -0.0277025525347122 0 0.916414938216086 1.19472296509252 0.909754830950866 1.43799343844731 -0.916512635079491 -1.13485187669429 -0.945137661654212 -1.25786426311016 -0.703574408940767 -1.91720595272914 -0.737186905185257 0.315462425653933 0.401033656440098 0.428135496224309 0.108918273700266 0.124932057485810 -0.09360244275321 0.354134674669704 0.234227542437928 -0.590569577880981 -0.831263673825903 -0.387486989062799
MMP0230 -1.17733005780121 -1.51886985041356 1.08483329031599 -1.08857580030417 0.233160568737228 -1.40447743312285 -0.538002194857505 0.775665834556107 0.74590593882344 -1.84033403702085 1.01472372314374 -1.51204737139882 0.521320236446726 -0.461195550381529 -0.230702308160449 0.946829092017357 0.91053063299366 -1.40900658297813 -1.36178255355336 0.604230232052698 0.816153388708798 0.716490777249613 0.592006609790122 -1.35123009744827 -1.36387300281770 -0.592006609790122 -0.425961339320286 -0.0364511060447942 0.101405604229670 0.0364511060447942 -0.152993492665712 -0.00339854523105446 -0.058689760259544 0.312508800985667 -0.611546009141125 1.26681707085958 1.39142351391807 1.20398687749636 1.32334335465502 -1.65171774640040 -1.75202393354432 -1.97732968892906 -1.94767802628918 -1.78313164745371 -2.02073762963052 -1.91701664090874 0.73445205192407 0.787283158306398 0.876599186184634 0.991225484174757 -0.343948228753759 -0.231095486681683 -0.586717653038622 -0.382106939136685 0.599578800823657 0.479185692527605 0.348074245851762
MMP0490 -1.25812116190879 -0.824762675241042 1.45994498207178 -1.32203761519358 1.16062943397333 1.6637275243561 1.10057344396092 -1.89430545742406 -1.95339856965226 0.086677975700729 0.108813934217339 -0.9954913964292 0.581551241961058 -0.0456518691327893 -0.00386539474330803 0.817275426162878 0.894552319377646 -1.09226496440968 -1.00479476661868 0.751280235058058 0.700598427109057 1.20909346539309 1.15316294346512 -1.12455439129033 -1.15426433311424 -1.20615123920776 -1.03345175267494 1.30136760620454 -0.894934479942462 -0.10638473924595 -0.841742110319487 0.103412094916943 0.117323307643805 -0.0576583090213529 -0.0211666921190401 -0.349921651169591 -0.667372144247609 0.0959282916075592 -0.895866251172047 0.571704431660813 0.47272443336034 0.700728419130802 0.605301916220988 -0.657262893550573 -1.37505225342451 -1.05778250115347 1.75640597676487 1.94297567695232 1.62665094920760 1.75513318816884 -0.771613384890858 -0.875959351406665 -0.550408690053174 -0.346479935093100 0.146435826757233 -0.246594700538539 0.749004197091357
MMP0953 -0.456444397300251 0.180464622993141 0.764804492622925 0.38099820642358 1.23879389386112 -1.38211812992754 -0.923703866298638 0.400828600333885 0.482629659380616 -0.982579077326794 0.672148449413357 -1.04676778249068 0.920974191712683 -0.400828600333885 -1.60693167663587 0.798014734207904 0.59747497416281 -1.31799692101722 -1.36642988535651 0.876636087667386 0.976621003280578 1.13879866584405 0.859352719375386 -1.16254926386791 -0.923247685107595 -1.00101353915937 0.863051470572639 -0.164214536810016 0.174391212330636 0.290729116577732 -0.0562608254634315 -1.76508320308001 1.74254301724534 0.678184571265236 0.719816058134161 1.19562200192833 1.07124030345035 1.28408004759182 0.976017717527618 -1.23994607476678 -1.49624312258012 -1.39163262503304 -1.96370869983171 -0.690712817308678 -1.20680134834265 -0.89406632018308 0.507431774044767 0.864584420884353 0.84664708389607 0.836606694388775 -1.05725167507857 -1.68091553105554 -1.16071014894311 -1.90067442714274 1.04191436182145 0.742406984856146 0.737076258134608
MMP1039 -1.39838986566973 -0.372241845550809 1.71612311614978 -0.684511745400502 0.744589107471065 -0.7135141006397 -0.683052251706422 0.375808332970900 0.410931770740538 -0.774181449085189 0.887232872581798 -1.58500659160212 1.60825761629269 -0.375808332970900 -0.609263945545807 0.96381760474955 0.932704835914467 -1.21030570799070 -1.16863261705487 0.75224824792793 0.740797850805689 1.12358840418256 1.12595119755316 -1.01648980739416 -1.0796798783378 -1.00050218265709 0.215560459646982 0.0239435610525051 0.0489132747215462 -0.0239435610525051 -0.0681593371294646 -1.53978046157572 1.22236737724516 0.886666882988854 0.94290423145353 1.07328101545161 0.776310001604746 1.08218401445264 0.761294714376368 -0.592194234820928 -0.717287199853848 -0.512799419818636 -0.720765998070356 -1.01384556630494 -0.95926159702065 -1.03453619005363 1.51042101075481 1.59338867556191 1.26816951359102 1.27430596804530 -0.517993060901684 -0.786736383671284 -0.573612997597351 -0.805724777235 1.21985012486148 0.864084127844319 1.22511141551492
MMP1040 -1.05846953152168 0.436455452014183 0.882582343644096 -1.25732311818342 -0.136204020848771 -0.689305801902574 -0.691993946390435 -0.163854341171587 -0.152864636680385 -1.17970742761802 0.633595301652237 -2.11002296753899 0.664208107178565 0.198288836119817 0.152864636680385 1.06866551487897 1.02597283587836 -1.02527780005889 -1.03007177262036 0.756250750469949 0.651181513333239 0.97182822598501 0.968154656274656 -1.36085926874039 -1.29329253577171 -1.16309808403415 0.272931756593901 0.0396446327759773 0.0357183417720290 -0.035718341772029 -0.0892140567008237 -1.26593710861914 1.17137576967334 0.910171204539155 0.995408959350517 0.688499847939565 0.67918043102173 0.690719029591382 0.801279805476512 -0.536193079961816 -0.503170253178993 -0.54565532657266 -0.537936356176923 -1.30923900156275 -1.27876467082911 -1.37033275319494 1.06698704039407 1.02684423303859 1.03145939371249 1.03129484009528 -1.22015842055501 -1.07726193370118 -1.32632879911017 -1.26918713874184 1.20414494163185 1.26147703266548 1.10161055750301
MMP1041 -0.733367052060872 -0.165759267475323 1.32655874931212 -0.526257039821098 1.30117879922845 -0.522426360774005 -0.567470265419257 0.418762941214096 0.389578442099173 -1.07823892507995 0.555701876500782 -1.84979762344965 1.51817938783641 -0.389578442099173 -0.423929610807215 1.13026878573399 1.09950642328226 -0.94729631838443 -0.96823569141275 0.719938358277758 0.644615122399127 1.10143895278447 1.14257159062946 -1.08045094584918 -1.05493972782654 -0.895411014768118 0.250598972920839 0.0127966609090491 0.0858454185388912 -0.0127966609090491 -0.0328622674316618 -1.18637017619943 1.59848048939753 1.25114191178455 1.25449968931686 0.121487757356422 1.11139195840188 1.16397047823428 1.21896806486930 -0.907591164178212 -0.503611081290776 -0.530419345879314 -0.554437005503253 -0.969593534728483 -0.907569010466531 -1.08410259275709 1.34518668399188 1.38483133921005 1.35584841588553 1.41406571977615 -0.47825006688095 -0.508649997575572 -0.778690331056312 -0.598342493886924 1.59479395717889 1.44428778274338 1.46664379665166
MMP1042 -0.74063865971968 -0.214229020810222 1.39920492563332 -0.828348683280644 0.908883605784223 -0.770994684932064 -0.823649747977926 0.401982012919592 0.362887511131058 -0.872847310131605 0.817530322564804 -1.34392112246415 1.54229416446609 -0.362887511131058 -0.436963115194057 0.744057643229295 0.689127245974857 -1.11399181068932 -1.09680101227729 0.809269785783047 0.828224058420081 1.0907301204269 1.12384784665543 -0.896574268323454 -0.984693650146903 -1.13234685510313 0.267594414689946 0.0199541825478525 0.0520776671426549 -0.0199541825478525 -0.051325225161155 -1.99821378482575 1.50629819878646 1.32638594767276 1.37048026113028 NA 0.901859412146076 NA 0.852770326128387 -0.37957587153027 -0.85663094725701 -0.621358645176411 -0.912883932763938 -0.952340293673297 -0.903326896344487 -1.03315027942764 1.28786712864470 1.37781342312324 1.25825650688352 1.25906662725563 -0.333459683033291 -0.604886608378918 -0.508744759937287 -0.747933355874763 2.02891093332988 0.913773496152649 0.907403267152189
MMP1046 -0.37278817481682 -0.455295537889963 1.17720216347897 -0.706495305348143 0.969816945464576 -0.68111165737552 -0.677103838712305 0.820753244680563 0.94499605502305 -0.697360200294712 0.577764359923137 -1.65246980491356 1.60361500619593 -0.811684662430445 -0.492546120204944 0.805483808152222 0.731530353071323 -0.920827261692584 -0.840617252235799 0.666560986966065 0.784739860110025 1.01578319447270 1.01447923432071 -0.939668475350353 -0.97160959171698 -1.19931090480460 0.187545052667941 0.0391355104871992 -0.00221327525333130 -0.110234833353904 -0.119259506092294 -1.36878138805936 2.18719924392493 1.56953493687871 1.18680498290083 1.2212864605907 0.942738404102914 1.46180012913469 0.937394539025423 -0.344917315737847 -0.509324096919216 -0.342387782410841 -0.482248032331475 -0.776333092374438 -0.6996496139042 -0.571961616323916 1.46042781025872 1.47437955353561 1.4828419920606 1.54491144083222 -0.516275959937028 -0.864605415963673 -0.49721809927835 -0.69066301796105 NA 1.99801319716042 NA
MMP1047 0.0706182879330354 -1.84876855579763 0.149316837035075 -1.38914160418717 0.0224474783226097 -0.616052693142164 -0.699442158262123 1.29034386866811 1.14069405909055 -0.644991419598633 0.257187395834792 -1.61198212025985 1.15003374357123 -0.257187395834792 -0.260372592736089 0.69320903797677 0.699747079848182 -0.696063293749867 -0.69320903797677 0.987345831531953 0.914566717910377 0.800836345644134 0.813365722238976 -1.20155627042720 -1.23119726665279 -0.840821618715007 0.34009838110857 -0.00493952844634879 0.00493952844634881 -0.0859769582340492 -0.15965066295782 -1.85730271534367 1.25819834020897 0.347502800944781 0.373499813145176 0.356182006605120 0.451244688867191 0.253680541042773 0.396242032657082 -1.51163072349306 -1.53118360584833 -1.46852682756260 -1.50717548564932 -1.42132018915353 -1.50603036203176 -1.38702438648423 0.831182582839787 0.893764214655522 0.830037775095107 0.954556883235797 -1.48988801958513 -1.33659068965070 -1.45761608636522 -1.46002942394352 0.539494264235264 0.616659289095199 0.580987626533393
MMP1305 -0.871363709113408 -0.0880643831439694 0.301731235031977 -0.920484780103858 1.01308664889863 -1.04783687058656 -0.870884626315118 0.480820218226947 0.775168987531802 -0.975913305721453 0.389381626145531 -1.44713189399382 0.745075864100835 -0.547254270549804 -0.245359350926749 0.951253456408129 0.821288911275333 -0.842667223669834 -0.78765435649107 0.42779085298501 0.344131980912174 0.65798237910076 0.81211216106856 -1.65333785757027 -1.32703183988716 -1.56255409900359 0.0658539661024086 0.713042521463352 0.0887317099904954 -0.0658539661024086 -0.476015052177828 -2.78300410459106 2.7345274312062 0.200104377730922 0.0413606086604389 0.678507734142047 0.398945259130654 0.760021725866882 0.308271372136534 -0.309092823650609 -0.590816278498282 0.256164927381216 -0.0411937207940917 -0.773026627185831 -0.806814684934301 -0.199775612930143 1.334174428338 1.33355902528503 1.39102689354549 1.37540377588702 -0.4236019600882 -0.290671734607600 -0.0263997431788163 -0.374220608994760 0.195497551139703 -0.108589619286940 1.03446826890078
MMP1560 -1.70262751248938 -1.26173086570513 0.197765819628234 -1.74978753519663 -1.56129140638944 -0.697938103894416 -0.717987855032587 0.336936301089856 0.292814931133541 -0.896747947343189 0.616238835990919 -1.93520747954404 0.910581296394104 -0.292814931133541 -0.347916497728657 1.65910076588071 1.59983465736496 -0.523479936951474 -0.482052088936379 0.88366396749351 0.754226856091991 1.01841850800571 1.20660479910363 -1.41230029987353 -1.15030104458133 -0.887559266456457 0.00788310704066669 -0.0578492653034785 0.0573715012404077 -0.00433969023955896 0.00433969023955892 -1.39362208106844 1.04188775676517 0.233239790638975 0.295718683946586 0.64906220533703 0.729063295430421 0.952756679697924 0.866527265693138 -0.863312268658543 -0.751168124697977 -0.536143222115475 -0.642930924567136 -0.95490152695195 -1.07169281708971 -0.970425771288027 0.69222072077827 0.798372603500212 0.798421332809724 0.930895167979891 -0.669609138651595 -0.544722259573676 -0.678591621704756 -0.590488759388066 0.997215553307402 0.919307652135986 0.958560494619924
MMP1561 -1.23977585248626 -0.887201666288412 -0.0538646243019503 -0.8668322463305 -1.34729415232564 -1.11916239421571 -1.10053260111178 0.366384439032546 0.341853811368617 -0.74649934628234 0.818210181852918 -1.78579134222184 1.02578978205017 -0.36751550355944 -0.341853811368617 1.07131742545521 1.06764005019866 -0.846616364991917 -0.821798230562275 1.02309757523697 0.952238471399736 1.41957514112835 1.31765628843206 -1.35998295664037 -1.12948309181172 -0.858791608750066 -0.0134350587264429 0.0134350587264429 0.0557791598073456 0.0389216199961178 -0.0431815166654777 -1.74097089205422 1.37305271491409 0.0758175590107287 -0.0478233406451456 NA 0.396993547184634 NA 0.364012916261526 NA -0.422712699167869 -0.456662619946335 -0.685388174538995 -1.14537794625015 -1.13782388082577 -1.52094830065209 0.286034862453387 0.173478966359232 0.375038348182828 0.336201444613666 NA -0.857772758604106 NA -1.03453482668301 NA 0.92100621452764 0.95677728997104
MMP1567 -1.14961005628801 -1.99795834131844 0.799644439434855 -1.75014818341487 0.416121957562545 -1.41012356088563 -1.56050502037489 0.667419597547865 0.510091732306235 -1.07489703666767 0.214256177465635 -1.70662958791626 1.29139606852253 -0.47379999475456 -0.214256177465634 0.666477788793314 0.747036814593345 -0.762068025117896 -0.865885062802613 1.36821514726502 0.919653332531135 1.07763870783713 0.989759825640397 -0.849241857053618 -0.820474137600097 -0.666477788793314 0.0100645081328519 -0.0129895659458414 0.0257289624734665 -0.00740886353947988 0.00740886353947988 -1.83269691695571 1.4521714162333 -0.537245135678011 -0.519059553835477 NA 0.222222458631579 NA 0.248760032316826 NA -0.689093789052992 -0.901454999516938 -0.913186056053942 -1.17627172541972 -1.03134908007980 -1.4758344601721 0.81684819481358 0.740941087117426 0.478352517254182 0.403176509527813 NA -0.419861802778564 -0.820992022624346 -0.664118786368662 NA 0.537792470380194 0.540939660439296
[+] Show/hide bicluster #113 motif PSSM #1. bicluster 113 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0.428571 0.285714 0.285714
2 0 0 1 0
3 0.714286 0 0.285714 0
4 0 0.142857 0.857143 0
5 0 0.142857 0.857143 0
6 0 0 0 1
7 0.571429 0 0.285714 0.142857
8 1 0 0 0 [+] Show/hide bicluster #113 motif PSSM #2. bicluster 113 motif PSSM #2 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 0.666667 0.333333 0
2 0 0 1 0
3 0 0 1 0
4 1 0 0 0
5 0 0 1 0
6 0 1 0 0
7 1 0 0 0 |