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[+] Show/hide bicluster #78 rows and columns.
bicluster 78
Methanococcus maripaludis S2
14x57
[+] Show/hide bicluster #78 rows (genes).
bicluster 78 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #78 rows (short gene names).
bicluster 78 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #78 rows (long gene names).
bicluster 78 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #78 rows (NCBI RefSeq gene IDs).
bicluster 78 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #78 gene upstream sequences.
bicluster 78 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #78 columns (arrays; conditions).
bicluster 78 arrays
Methanococcus maripaludis S2
57
[+] Show/hide bicluster #78 ratios.
bicluster 78 ratios
Methanococcus maripaludis S2
14x57
GENES H_vs_Leu_3000070032A.4 H_vs_Leu_3000070032B.4 H_vs_Leu_3000070033A.4 H_vs_Leu_3000070239B.3 H_vs_Leu_3000070259A.2 H_vs_Leu_3000070260A.1 H_vs_Leu_3000070260B.1 H_vs_Leu_3000070261A.1 H_vs_Leu_3000070261B.1 H_vs_PO4_3000070034A.4 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070254A.1 S2_vs_S40_BR2_3000070263A S2_vs_S40_BR2_3000070263B S2_vs_S40_BR3_3000070266A S2_vs_S40_BR3_3000070266B S2_vs_S40_BR4_3000070272B S2_vs_S40_BR4_3000070273A S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070030A leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR3_3000070251A leu_vs_PO4_BR3_3000070252A leu_vs_PO4_BR4_3000070256A leu_vs_PO4_BR4_3000070256B mma_0492m_0.598 mma_0649m_0.885 mma_0783m_1.23 mma_0849m_1.4 mma_0912m_1.56 rapid_H_vs_slow_H_3000070036A.3 rapid_H_vs_slow_H_3000070037A.3 rapid_H_vs_slow_H_3000070037B.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070038B.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_H_vs_slow_H_3000070041A.1 rapid_H_vs_slow_H_3000070042A.1 rapid_PO4_vs_slow_PO4_3000069786A.2 rapid_PO4_vs_slow_PO4_3000069786Alow.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787A.2 rapid_PO4_vs_slow_PO4_3000069789A.3 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069790Alow.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023A.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024A.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0041 -1.98778027577979 -1.88655146417766 2.12485063728449 0.0554698831992404 0.479283841224755 -1.99165903458684 -1.51833169286358 1.74775347355364 2.08270832206486 -0.105674738880289 0.286852224810992 0.447877400700312 -0.316658993952036 0.434928196599489 0.502043730152404 0.158372258146378 0.318722152550852 0.669278869951612 1.15367428888095 0.809042040908175 0.889757273754688 -1.28923137037024 -1.10727550980616 -0.586743834445816 -0.788851622102162 0.887978574366878 -0.915804788068 0.986466183752315 0.660428824053624 0.220491441979956 0.0662299062184061 -0.0662299062184061 -0.125467483409964 -1.24424012770573 0.750816986059123 -1.29498283264721 -1.34725206514711 1.25437024936496 1.30374990944098 -1.03689785515982 -1.128251791077 1.41974956761777 -1.47272910233584 -0.625093124028898 -0.470815392386776 -0.218385520816745 0.831370459375866 -0.0314667002712569 0.102059703203444 -0.279978819671439 -0.106247228939510 0.0314667002712568 0.0772720153502647 0.475370901447909 -0.630589550772013 -0.618309806486976 -0.80572338496364
MMP0335 -1.59894351408491 -1.52524082083002 2.24075772750092 -0.384543721694695 0.258831556887841 -1.28496664666214 -1.13496862027044 1.27936425403754 1.36953292187070 -0.69969633247298 -0.908858909023732 -0.648043252479868 0.409183471243619 0.510947252114447 0.822397937950221 -0.0636448471380501 0.0277714071555561 0.408261588602943 0.821623722383242 0.710085297931675 1.93539420798741 -1.39711343045909 -1.31899931490787 -0.125405433453455 -0.0951698595761905 0.529360303227837 -0.142949842653761 0.95109339005915 0.964798759588733 0.134985224577999 -0.134985224577999 -0.599231283413095 -0.657584271121292 1.00635468861818 1.66240276914674 -1.35876672927766 -1.52239518134458 1.56870243875710 1.18963612998164 -0.944851581382048 -0.800297284478745 1.27278414176772 -0.88812733601488 -0.554205287880108 -0.538991386928091 -0.426637662466907 1.08457706310848 0.421243196801957 0.28850086959067 -0.180225577227496 0.0257260429715160 -0.103111867060787 -0.0257260429715160 1.27121633419978 -1.63906165818188 -0.917347335214659 -0.688776445831655
MMP0490 -1.25812116190879 -1.45593331534984 1.42604022214883 -0.595571591758553 1.45994498207178 -1.32203761519358 -0.239889174441685 1.45468933945223 1.67767607788132 0.909396377438786 1.13897542637680 1.11083372947618 -1.04502928269654 0.108813934217339 -0.0475615467515855 0.709618849013665 0.581551241961058 -0.00386539474330803 0.0970680998975595 -0.183371355533978 0.817275426162878 -1.09226496440968 -1.00479476661868 -0.70524215450991 -0.700598427109057 1.20909346539309 -1.12455439129033 0.83618794531052 0.785420694045683 0.645473121996346 -0.894934479942462 -0.10638473924595 -0.841742110319487 0.10638473924595 0.103412094916943 -0.213994580181472 0.117323307643805 -0.530193811325322 -0.675851506241865 -0.0576583090213529 -0.0211666921190401 0.0150644097261186 0.675576768004018 -0.349921651169591 -0.667372144247609 -0.895866251172047 0.571704431660813 -0.657262893550573 -1.37505225342451 1.94297567695232 1.62665094920760 1.75513318816884 -0.771613384890858 -0.346479935093100 0.146435826757233 -0.246594700538539 0.337492059499843
MMP0719 -1.55485401109144 -1.51030280031700 1.66664547432336 -1.09097761439169 0.456772727006409 -1.01499353437705 -1.06931878476843 1.06993546346884 0.971117290940886 0.196499999127630 0.423015588072406 0.462263872751255 -0.441306673746037 0.000304257144295959 0.00586558984268931 0.444561061414841 0.518341414738195 -0.50777412870561 0.849731135362683 0.415173852830195 1.34703355589147 -1.54166807568554 -1.55592596145350 -0.462010126849048 -0.540919493947478 0.729878358735739 -0.508761737505219 1.06276350461968 1.00770220485131 0.56822489679238 0.285521446222053 0.0963967191807416 -0.0963967191807416 -1.72115730645327 0.114615010493867 -0.0622894603148244 -0.0209188959901507 0.779159304343343 0.707002773333937 -0.822271163600046 -0.8741594448293 0.372097615695686 -0.393286097425118 -1.67719150853381 -1.71140202107646 -1.70592101886772 1.39593996409667 0.731398444844436 1.037566196068 -1.09801015780554 -0.737170415183494 -1.61979171083923 1.2473985326716 1.31514101879543 -1.29452912141580 -1.62877759280785 -1.65496742022049
MMP0908 -0.202369695611086 -0.167784362763434 0.465806889720927 0.393641637641038 -0.315962531501041 -0.325099928771747 -0.615452518356606 0.386019458651359 0.187637382096984 0.0461041192569056 0.184440903665072 -0.219434629533247 0.33387696763909 -0.129763328789571 0.411417843950111 -0.466794672183097 -0.315604267756053 0.292469625456999 0.945803399462095 0.739509367276913 1.71270795060665 -1.94531137321831 -2.09051599700083 -0.345371821698977 -0.099433158413848 0.68206160316619 0.189335186645209 0.378171235960497 0.333045094399808 0.636237068849218 0.00678513691143544 -0.520193829876719 0.442077766460449 -0.823611234326551 0.497566288048561 -0.374124331597256 -0.411081366133568 0.532543786412758 0.340873004043362 -0.424696819551838 -0.365021142166104 0.598793307190979 -0.412069007216241 -1.72673533675521 -1.72827099804161 -1.78241046313804 1.87631694434688 0.967399292155455 0.914269812977726 -0.592184547794884 -0.663129465793758 -0.635630616800076 1.50655315635484 1.74255758841204 -1.62265840094128 -1.92178448187662 -2.14524768009490
MMP1053 -1.55464172023500 -1.45876051660092 2.1181615651518 -1.43310464362739 0.623749624875569 -1.35262485762122 -1.24146452539419 1.57704705096821 1.60951129138311 -0.88168910700117 -0.0942689482124079 0.279406990716561 1.57416658019495 0.613946501132671 0.0831225935339948 -0.0906775186600691 0.221683066481456 1.52163192416058 1.06203850330461 1.22149375810924 1.39990358098334 -1.05757117572272 -1.03087523617133 -0.379177935809557 -0.401297864905412 1.26513945443629 -1.27118635408888 0.759036914390999 0.911941759177832 -0.0941713696417755 -0.019683360048076 0.101761684954432 0.525661497754501 -1.38979959868866 1.16457611194167 -0.769079403718504 -0.792390237849937 1.37889735993126 1.31183687505168 -0.761134503219228 -0.702172966933434 0.98363787431022 -0.793708254330752 -0.29033261024481 -0.275116108321715 -0.359467635087855 0.995093970876226 1.11926836569680 1.23714574373971 -0.00269611475292257 0.00269611475292257 0.0283255409491866 -0.0107119899868854 0.888081801502774 -0.947309111042131 -0.286262916503341 -0.166441591091712
MMP1054 -1.62940954908745 -1.62758672755987 2.16266512387242 -1.74045589372865 0.576505455671117 -1.12566252367941 -1.13077234132798 1.39106566154850 1.45892685820272 -0.549695226822434 0.255936806097641 0.414162610208114 1.37345076171065 0.394932196744298 0.614640411333997 1.50500164977522 1.54155197484243 -0.268285437046482 0.0171525129371551 0.0307667350763042 1.40556799992869 -0.959703643765538 -0.828226034311747 -0.506899710122511 -0.392588021455985 1.08779392182949 -1.55030044773620 0.623751026015768 0.488330372288739 -0.0695474755483171 0.0334682390863915 0.253266745426807 0.711536345399336 -1.35431642657627 0.9824378567016 -0.897134150619044 -0.886083414710032 1.33792918088739 1.34340429155008 -0.933756223582942 -0.92863279595346 1.33803836916858 -0.808707456128126 -0.353295005972963 -0.263154027842437 -0.172425963224253 0.814667675645367 0.607973611644413 0.632032091167962 -0.846800891536225 -0.531113861440883 -0.557382617152064 0.662748837801991 0.720963477383786 -0.184508701515783 -0.195572316551475 -0.284074846891297
MMP1246 -2.32314499466477 -2.48541714025368 1.86049950817958 -1.58096354542567 -0.170073701346258 -1.60335049566350 -1.76401993424254 2.28760639877283 2.14820784355434 0.900560106240138 1.00551223636553 0.736065988344993 1.72299911786378 0.0379818050585434 0.388372521883865 0.250687123087367 -0.0379818050585435 0.720347763055907 1.14983084721990 0.731900744623663 1.43134811383518 -1.58169461061436 -1.73417441742193 -0.279277030261588 -0.351188744386640 0.873418415404014 -0.875952784226862 0.301525387288466 0.279277030261588 0.285203241914461 0.022614411711435 -0.0703351813284025 -0.022614411711435 -1.52961887259191 0.109607781787433 0.0418090920384228 0.000824601873294357 0.636527904666972 0.767000477139829 -0.562006347153575 -0.494663345842625 0.637314428900395 -0.633828459991664 -0.336209851668900 -0.747254924955893 -0.767359210977227 0.718886527424092 -0.0230383038408288 0.0430059060176128 0.111534303006903 1.44515351509933e-06 -0.0488309092046811 0.165311850184697 -0.165132347144788 0.0370049275986669 -0.440007156671081 -0.748881632403807
MMP1247 -2.28058492361541 -2.23958670515233 2.08845149525873 -0.889898601514491 0.238116399111496 -1.69559443546528 -1.69468352534330 1.76605243586842 2.09042558116405 0.640650162914249 1.23616144628843 0.876869055501301 1.91266794197468 0.805226401042563 0.912291569507403 0.881683228039286 0.797445158757986 -0.0600423060814011 1.27038216638944 0.817558813392602 1.55344134013437 -1.54714148169139 -1.60890329102192 -0.414857398473442 -0.536096040362285 0.629035768751783 -0.463559751781633 0.597728864572806 0.414857398473442 0.315411738652486 0.00500032780256798 -0.0921010098607074 -0.00500032780256798 -1.60940718262206 0.456826524570313 -0.123201077476058 -0.0316344154678657 0.897789341101292 1.37791545250074 -0.78009552963606 -0.733286081969451 0.8377390916845 -0.877956369992682 -0.268339200113286 -0.785281786281234 -0.861237605829325 0.75257497087112 -0.0597244518513802 0.0422088239850931 0.683611220580878 -0.126172883769517 -0.0754147916081063 0.629576577186401 0.211830670932379 -0.0386511188431294 -0.608791558797747 -0.917016340191736
MMP1249 -2.67447399280090 -2.46875058073457 1.79455780885194 -1.57106056317739 -0.0470544344141988 -1.18459037110095 -1.04973075598362 1.72528185711812 1.71169659752271 0 0.319133401685017 0.41800483090547 1.05676097954192 0.564032644591957 0.580296760752853 0.756990726432403 0.955318512092153 -0.244073975515603 0.530365219555644 0.421436879696135 2.05008794455968 -1.18797761122671 -1.13901296645260 -0.504409708963128 -0.383309638846341 0.276167193123240 -0.708448141704117 0.460896897231968 0.504128643464707 0.276877823250854 0.0424333828736941 -0.141687717501694 -0.0424333828736941 -0.114835342401935 0.353590354410645 -0.513213286190742 -0.48002341023775 1.10897613341473 1.24716358797292 -1.13578638876442 -1.08770748608208 1.10948452926359 -1.20852937843561 NA -0.886880360122698 -1.08092598293233 NA -0.0518567434866992 0.0127879543732243 -0.0423742024586542 -0.0437942259612576 -0.165471929276962 1.07227728835921 0.902702737566801 -0.196485640723418 -0.600529531139234 -0.493060032942885
MMP1608 -0.506485334663192 -0.651689979700155 1.64309721118519 -1.19451453004999 -0.386883469634415 -0.498069121501263 -0.319936828671879 0.670829988055485 0.599559892451515 0.0193838700092134 -0.0193838700092134 -0.0551752623629935 0.459016916695977 0.296620025847844 0.207159853766559 0.133067922780758 0.393635665896476 -0.133067922780758 1.29142256456181 1.18469851769432 1.39633495463368 -1.01567813631424 -1.25284535279890 -0.924332794364057 -1.07324594317776 0.102174875897906 -1.05712502786481 -0.0495125733734594 0.124637777077432 -0.00912282584753459 0.00912282584753459 -0.216974690068463 -0.193575686367916 1.73312799135567 1.39121791876353 -0.71226844143146 -0.815281404870285 1.59160150662943 1.37145219357078 -0.989755328225458 -0.794570761090467 1.89826021464508 -0.818275103058669 -1.21514493556745 -1.12624283925258 -1.03538625475337 1.40944742738740 0.493061608138114 0.586678105986594 -0.47373017279694 -0.296254981670529 -0.196456145888093 1.10807357602537 1.61302638484717 -1.44524554445871 -1.28885941810622 -1.41692908952015
MMP1691 -2.04324434860726 -1.94261936137825 2.32903374047562 -1.26988751396081 0.0836443931896161 -1.08992276010702 -1.26213417220846 1.54613789077995 1.42507075482304 -0.8980154773238 -0.108664528862680 0.112864606453799 0.977889065274756 0.217178301678178 0.357713798533149 -0.369626583038069 -0.217178301678178 0.475809906529637 1.00969985697567 1.23851667954453 1.97136835658221 -0.97902019658946 -1.00565708175092 -0.734748100503587 -0.871900398284391 0.204135763011335 -0.310488647483484 0.623627878901295 0.601324398187023 -0.096261195501171 -0.168752293126586 0.00302901895177019 0.288475550677909 1.11750263598613 0.859431678072878 -0.65957425069502 -0.653222950486084 1.14757187606542 1.18030341128742 -0.975282878816361 -0.883621683756962 0.764633913912725 -0.660211947991804 NA -0.45265768864821 -0.273255708989305 NA 0.685007244436774 0.743672858556627 -1.00874758163419 -0.800948738724357 -0.939555550763028 0.769943014483174 0.664920561220634 0.0822837144925747 -0.737622516850195 -0.750929974759785
MMP1692 -2.48921508968122 -2.23975431821284 1.79704600767212 -1.03457098749323 0.264591311562688 -1.01193267015864 -1.09933327775687 1.31585462531189 1.41312548914627 -0.892865867714213 0.0377470811370545 0 0.809345093928815 0.375563647501786 0.391816519395757 0.362819593620546 0.381213645701086 -0.411794104800014 1.13057254601991 1.32829527352417 1.3228250919749 -1.59994347991273 -1.55280479807625 -1.17531665446330 -1.17549371085649 0.282942009322526 -0.345196380753690 0.359228475069142 0.453809078288067 -0.175727548680724 -0.142738598168972 0.0739849278467446 0.146475210686484 1.15119693646673 0.516805683474717 -0.843652766317292 -0.834790426092235 0.843569239540436 1.13062474031843 -1.1017525190558 -1.06563610708610 0.46993104205425 -1.06948912116562 NA -0.832113190253335 -0.8115822254782 NA 0.676957202606014 0.66351414519826 -1.25297864955234 -1.07732330961518 -1.22218352524848 0.839370404684356 0.807966400057799 NA -1.01125898794752 -0.845689782950175
MMP1694 -1.87729513429595 -1.82032932833214 2.21102752154313 -1.77742720751756 0.0231343526504927 -1.40409520865349 -1.25719551187095 1.50371562166165 1.62050754921373 -0.638984276711747 0.102090807935307 -0.0231343526504926 1.1154211351459 -0.0194587904174258 0.0549697791988899 -0.0786792341758613 0.0194587904174258 0.295210331831382 1.62311115874398 1.48267268821885 2.01573580886967 -1.20111303044567 -1.13502522624864 -0.655095875552146 -0.490799661546285 0.302319911453659 -0.83989352310283 0.334417190279351 0.512425430968654 -0.241324135653786 -0.179559803070804 0.0422521994346916 0.130129065761804 0.972667792915607 0.656777965379543 -0.584802036877539 -0.619132857203079 1.26867812820047 1.17572137341846 -0.850041800506978 -0.919803832014633 0.744390646376322 -0.611408529243276 -0.478886581319239 -0.602484072636754 -0.488714206096411 0.78815550023317 0.97416293928693 1.02510514174597 -0.82054583648149 -0.733033051671971 -0.72318452944145 1.08133150854567 1.01733469220132 -0.461964248589017 -0.4366181391329 -0.544006455147449
[+] Show/hide bicluster #78 motif PSSM #1. bicluster 78 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0.142857 0.714286 0.142857
2 1 0 0 0
3 0 0.142857 0.857143 0
4 0 0 1 0
5 0 0 0.857143 0.142857
6 0 0 1 0 [+] Show/hide bicluster #78 motif PSSM #2. bicluster 78 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0.5 0.5 0 0
4 1 0 0 0
5 0 0 1 0
6 0 0 1 0
7 0 0 1 0
8 0 0.5 0.5 0 |