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[+] Show/hide bicluster #57 rows and columns.
bicluster 57
Methanococcus maripaludis S2
21x57
[+] Show/hide bicluster #57 rows (genes).
bicluster 57 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #57 rows (short gene names).
bicluster 57 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #57 rows (long gene names).
bicluster 57 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #57 rows (NCBI RefSeq gene IDs).
bicluster 57 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #57 gene upstream sequences.
bicluster 57 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #57 columns (arrays; conditions).
bicluster 57 arrays
Methanococcus maripaludis S2
57
[+] Show/hide bicluster #57 ratios.
bicluster 57 ratios
Methanococcus maripaludis S2
21x57
GENES H_vs_Leu_3000070032A.4 H_vs_Leu_3000070033B.4 H_vs_Leu_3000070240B.3 H_vs_Leu_3000070258B.2 H_vs_Leu_3000070259A.2 H_vs_Leu_3000070260A.1 H_vs_PO4_3000070249A.2 H_vs_PO4_3000070249B.2 H_vs_PO4_3000070250A.2 H_vs_PO4_3000070250B.2 H_vs_PO4_3000070253A.1 H_vs_PO4_3000070253B.1 H_vs_PO4_3000070254B.1 S2_vs_S40_BR1_3000069792A S2_vs_S40_BR1_3000069792B S2_vs_S40_BR1_3000069793A S2_vs_S40_BR1_3000069793B S2_vs_S40_BR2_3000070262B S2_vs_S40_BR3_3000070265B S2_vs_S40_BR4_3000070273B leu_vs_PO4_BR1_3000070031A leu_vs_PO4_BR1_3000070031B leu_vs_PO4_BR2_3000070243A leu_vs_PO4_BR2_3000070243B leu_vs_PO4_BR2_3000070244A leu_vs_PO4_BR2_3000070244B leu_vs_PO4_BR4_3000070256A leu_vs_PO4_BR4_3000070257A leu_vs_PO4_BR4_3000070257B mma_0334m_0.402 mma_0783m_1.23 mma_0912m_1.56 rapid_H_vs_slow_H_3000070036B.3 rapid_H_vs_slow_H_3000070037A.3 rapid_H_vs_slow_H_3000070037B.3 rapid_H_vs_slow_H_3000070038A.2 rapid_H_vs_slow_H_3000070038B.2 rapid_H_vs_slow_H_3000070040A.2 rapid_H_vs_slow_H_3000070040B.2 rapid_H_vs_slow_H_3000070041A.1 rapid_PO4_vs_slow_PO4_3000069786Alow.2 rapid_PO4_vs_slow_PO4_3000069786B.2 rapid_PO4_vs_slow_PO4_3000069786Blow.2 rapid_PO4_vs_slow_PO4_3000069787Alow.2 rapid_PO4_vs_slow_PO4_3000069789A.3 rapid_PO4_vs_slow_PO4_3000069789Alow.3 rapid_PO4_vs_slow_PO4_3000069789B.3 rapid_PO4_vs_slow_PO4_3000069790A.3 rapid_PO4_vs_slow_PO4_3000069790B.3 rapid_PO4_vs_slow_PO4_3000069790Blow.3 rapid_PO4_vs_slow_PO4_3000070023Alow.1 rapid_PO4_vs_slow_PO4_3000070023B.1 rapid_PO4_vs_slow_PO4_3000070023Blow.1 rapid_PO4_vs_slow_PO4_3000070024A.1 rapid_PO4_vs_slow_PO4_3000070024Alow.1 rapid_PO4_vs_slow_PO4_3000070024B.1 rapid_PO4_vs_slow_PO4_3000070024Blow.1
MMP0016 0.335104927805211 -0.260074301942344 1.18048843236337 -1.42492718631492 1.20166012756640 -1.62367502564804 -1.31391654116252 -1.50971031516451 1.49381114806407 1.16345190118062 -1.87918712290754 -1.88093339971658 2.16552097295435 0.726427670427376 -0.134729586344892 0.275819578598666 0.134729586344892 0.860870170771687 0.524009045532598 -1.41227943620092 0.701466806378908 0.374846980461887 -0.678393578206038 0.0177729763867490 -0.0177729763867489 0.226952672923814 -0.907571811204523 0.939632838255523 0.495669837991874 -0.322355938992877 -0.0371535315509166 2.60941847572341 1.42973615710082 -1.56615400160798 -1.58007552554063 0.199613479221106 0.140008711360213 -0.00770292875555144 -0.192562339849063 0.281555334402238 -0.385242296391687 -0.376749950229177 -0.255184853109909 0.301317224285828 0.0377975317972114 0.0722745535518024 -0.115637102704511 -0.188186578794945 -0.20926698111205 -0.185320963191733 0.238200921183743 -0.0951390933703755 0.275209618379695 0.125216799215605 0.103699534417406 -0.182340487340801 -0.0368936418458955
MMP0036 1.33720927286255 -2.15129764926100 -1.42486383887857 -0.331522206622949 0.550352534845678 1.88870498145331 -0.090495212475074 0.128125310929296 0.162377533183912 -0.143154660813728 0.407820732413421 0.082349677100486 0.212437712827477 -0.0835532741831864 -0.190079312661070 -1.65384166022735 -1.75613298765263 1.36659337496173 0.282020364996644 0.241725221729300 0.985222500374981 0.972850035485806 -1.44349549302618 -1.41430085878824 0.380023324927250 0.63839428553383 -1.20252458784600 0.864734880703286 0.68599247328228 -0.000508696411151096 0.000508696411151169 -1.54077579113013 0.955190684840702 -1.22633530808679 -1.02527036989936 0.000687142639757018 -0.181317789187330 -0.236915306443658 -0.255119668818866 0.6785841240598 0.515389176354121 0.784236466030754 -0.177075275065673 -1.95783207090019 0.405890319244379 0.755548556921895 0.211208881145267 NA -0.906818657530697 -0.66370704332701 -0.890816445333915 -0.57677926400261 -0.980000574920523 0.461790311513669 0.00326358749353409 -0.0129471279327849 -0.0596177442809575
MMP0050 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.127644441181791 0.0208594364150153 1.94477565132896 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0107 1.04109228472745 -1.72084948116853 -1.15948370505763 -0.193691001842366 0.19908402985095 1.23280006497457 0.744826360543925 -0.194871573131095 0.789544088770092 0.235682959556140 0.489230511418029 0.179348516209832 -0.134419871909552 1.16369004687163 1.47825875376849 -1.52638109793785 -1.06406316241675 0.750523782442497 -0.137858023047546 -1.81288113946231 0.284637260878804 0.482727467993623 -1.18105308751406 -1.47459841061866 1.04368444627520 0.73434923187502 -0.473420862982307 0.799989801144863 0.362043906943014 0.779991179685948 -1.39798123127728 0.0746513511884926 -0.799661402413987 0.133534493662105 0.186453394227880 -1.50734367956442 -1.58256085205283 0.541260683035234 0.611112647860476 -1.37379863471430 NA NA NA NA -0.302742906076094 NA NA 1.04852938124127 1.15021094412229 NA -2.49687129783647 -2.03704223201609 -2.06148045468251 0.668735910022317 0.453608582376700 0.552455789663343 0.932972649918863
MMP0134 0.0604444550256483 -0.722655232314494 0.154741071703782 -0.601913368758048 0.615085522472831 0.0941663584155939 -0.294884270473174 0.278461420546031 0.300716533078488 1.04458597520600 0.264668065880075 0.488836359289061 -1.38865904327808 1.94585933280671 1.03899586683508 0.0889541558822294 0.631354487837563 -0.492691233204694 -0.078318172317044 -2.04207573352315 -0.601036956978032 -0.0556933209168025 -0.133075680569673 0.0556933209168025 -0.861528820212818 -0.856316094285548 -0.81427939201535 0.140944832384553 1.25345733806436 -0.335554318141051 0.206854239423172 -0.585896729324538 0.155093737688795 -1.46166105163798 -0.385433887811361 -0.225910306803276 -0.180046031627916 0.407007719657521 1.24865708217821 -0.948999863937283 -0.649758655346156 0.747504308517326 0.21121504515551 -2.64916167353858 -0.46992030336203 NA 0.474590025314465 0.284652331660914 NA NA NA 0.497347795134619 -3.1477733729241 -0.132775867221500 -0.384222077170633 0.521029240893254 -2.94847623975693
MMP0402 0.697271483216454 -1.51225658827555 -2.49638014445281 0.0107575076082092 0.00413949510131921 0.913319078173813 -0.65253805524088 -0.397555813226645 0.412844514949342 0.437270365319591 0.792298561512138 0.683326947206501 -1.94413927677734 -1.16703717232794 -0.808256000639997 0.946097857338033 0.627795322796315 -0.780763728752489 0.162185630001845 -0.305229792414248 1.48901531494784 1.27213641693158 -2.08284554852429 -1.81428159377175 0.438989782841046 0.767851990370703 0.179320253570555 -0.112930456860228 -0.0919190485355467 0.146819895634461 -0.113269545368144 -2.40590155571274 0.129778129697493 -0.696978441938366 -0.434016144644852 -0.593581940492994 -0.208685057905378 0.158249408965964 0.0412625090861673 0.0271707213173166 0.991816889586211 0.557453351294802 1.17992608862128 -0.818462441418188 -0.537044521658141 -1.01641811686585 -0.407129176031999 NA 0.494040108969852 NA 0.72893182039594 0.306349753479287 -0.194789895449408 0.815338779633432 0.500051224968606 0.260872189482416 -0.0570665547263031
MMP0484 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.178477679125542 -1.16010491431602 1.01486100992420 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP0583 0.696026614773865 -0.335828135627267 -0.0654923567795249 0.385879619160431 -0.176619256197397 0.275410152415976 0.233711107210012 0.297068293689963 0.154087744462720 0.195763620933222 -0.0389267017090399 -0.00990507161200821 -0.068058087192229 0.767141856977761 1.21875464608755 0.562801624237124 -1.36491351611433 -1.01143702460716 -0.166263056765273 0.30015716394365 0.809525316278246 0.831819946413285 -0.985891111149563 -1.17727084793896 0.945474095193503 0.801043722866043 -0.909718763250385 0.313084058943025 0.311116473458675 -0.00423444317785868 0.44455037050051 -1.78091417216286 -0.310040386715063 0.762427394436129 0.33530238954829 0.173539362788816 -0.257447369208887 0.0306549784156988 -0.244242456641685 -0.0136658858741998 NA NA NA NA NA NA NA NA NA NA -5.11599436403957 -0.91848386479048 0.48981258810702 NA NA NA NA
MMP0644 0.359309558794771 -0.311810479796838 -0.769075809738572 0.428958753409503 -0.59225863328195 -0.090835678758798 0.172578332106682 -0.0745873944434874 -0.0411349292946889 -0.344184284191549 -0.378224270083762 -0.462435279719352 0.067500527100613 0.794277181057992 0.864208173217505 -1.02824388800596 -1.02257618896639 0.591427888542893 0.368536444156568 -0.59050402601988 0.68214969384434 0.459605503846274 -1.38607723817065 -1.57006152392201 1.22539490131792 1.43327892358376 0.0198093367978555 -0.0198093367978556 -0.288579109419322 0.0799016875489133 0.233317573089777 -1.81555680443628 -1.40788828017263 1.44205175669543 1.33168170691619 -1.27998741938702 -1.94423359394621 1.69941041778057 1.48367283225828 -1.16954715675740 1.50091742431899 1.30079350336164 1.71374895745718 -2.10621423149959 -0.970225327523221 -1.06609987098149 -1.30347889259453 0.372969127995617 0.290572404840254 0.296257501884395 -0.95270304591036 -0.98552268697057 -0.931865728731826 0.202649299227544 0.113811547831114 -0.0504864796331148 0.0411349292946889
MMP0649 1.22570649895086 -1.10410048783292 -1.70103204889537 0.378747486691558 0.701382547286515 0.405270441186886 1.87182146744209 0.651304456829782 1.00436612310119 -0.920209719451098 0.817691955372654 0.772128178308508 1.13117539650829 0.705583357600727 0.372610710730027 -2.01002883402894 -0.633145230038594 0.117161991226892 0.103483537282609 -0.087518193969136 -0.0810162057695805 -0.175686335124584 -1.38349837353048 -1.30550910178110 0.924438701038354 1.02211600844607 0.00920498143226993 1.27595291333632 0.276031955751863 -0.0069068565785072 -0.376032057640171 -2.34299088366783 -0.976266528392648 1.42439623446860 1.14640479610933 0.525038134959777 -0.00975548546670823 -0.273207366868899 -0.992865768095559 0.63892090251912 -0.93722091152995 -0.263248781963619 -1.80187227240466 1.88982529633144 0.68135722473236 NA -2.96758871516055 0.67993024065699 -1.28259971579783 NA -0.509159237030378 -0.839209491596566 -0.503571798358263 -0.142483377501841 -0.988421246132977 -0.295430032541021 -0.331313966820883
MMP0971 1.34934755926965 -1.57411112225664 -1.23652171535579 0.307508562763764 -0.400314491594727 0.54924571402982 0.651321004420206 0.192578495652388 -0.302530723128619 -0.991075549345471 0.270962734862313 -0.00516783459025568 0.55174290209868 1.02178277359683 0.665272458735967 -1.98576977292464 -2.10591782866288 0.0423138548367744 0.347719021656236 -0.673622107247532 0.188977366548549 0.0824479689453216 -1.28483618162468 -1.35164132776584 0.771349761354601 -0.00565746576646564 -1.4531272655374 1.31216077246304 0.47511802526311 -0.446117314504364 0.447396565071668 -0.333116847725874 -1.67641802939095 1.27968801513942 1.16564479353274 -0.8853017092881 -1.68652150178958 0.792154940398286 0.689439626914967 -1.24676028238832 0.917216243126766 0.790608385746207 1.25185207508711 -1.42596727965913 -0.944637502120433 -1.22400738838773 -1.48550647608093 0.340242118323485 0.0499892022009673 0.00516783459025568 -1.57639028923752 -1.82116329951968 -1.77503007850170 0.910281474698228 0.636314078188221 0.477458086542729 0.582827745854688
MMP0990 0.37678072693038 -1.01726474682433 -0.804153321282494 0.507841149158624 1.50539236435393 0.954266433053286 0.206080750808797 0.305197608198003 1.17027075120526 0.0740871912846382 -0.404591374028001 -0.548492591335408 1.28861418215044 1.01057788162358 0.150129682669956 -1.05498987299815 -0.597476967204615 0.224583946519636 -0.300766513603968 -0.206515500998147 -1.19557806573221 -1.23501083934539 -0.218920408028534 0.0714559093562127 0.0610843327521341 -0.390036138219336 0.440318272696146 1.39870979585427 1.06984951144603 -0.176696943166433 0.054245046023892 2.64244327572081 -0.815207042183907 -0.648843913303869 -0.948777220888426 -0.0780817693653685 -0.848742392146296 -1.16863036192237 -1.10996038272528 -0.452326703922572 NA NA NA NA 0.598643461158035 NA NA 1.34305306593566 NA NA -0.505679385422462 0.127427086158567 0.787047657708065 -0.361544162285218 -1.73206739945774 -0.426933548674200 -0.900931076506284
MMP1038 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.070477615154251 -0.070477615154251 -1.52787290161312 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1459 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.199791848582911 0.0671637239059605 -2.51208511438149 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1479 0.436804206130191 0.580720469595874 0.756923189668404 -0.440343055026239 -0.486475646990008 -0.102137697834125 -0.666206778957262 0.00411973343940497 -0.941817866752534 -0.131052665363381 -0.74183005574342 -1.05829874781166 -0.524781769221809 1.29385026931088 1.20637425239891 0.585426603945235 -0.165673816331931 0.473696342722193 -0.0994576243705064 1.14393493848076 0.886503149574142 0.645156835659798 -1.67140184005747 -1.70187360622807 0.156154876194533 0.00565743195852404 -2.29715298643986 -0.0015163158379239 0.218755493157047 0.208700622009217 -0.208700622009217 0.914566808651287 -0.084482696117094 0.384833872529016 -2.66045332793021 0.844805909299118 0.602481671621477 0.0755284272957906 -0.192306232299859 0.828756840112492 0 0.097000540664272 0.241830867782301 -1.04984327540285 -1.40513893284868 NA -0.890539016143754 0.0234290812640392 0.647996089824854 NA -1.90492642936093 -0.98081688287119 -2.19397161706571 0.35275254430001 0.306238733476791 1.02383076498527 1.12253311267911
MMP1661 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.03601794939790 -0.604830137655675 1.75731446931506 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1693 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.0620916145916018 -0.0201525415779760 1.35802712615550 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1696 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.0709491260271827 0.086937661469928 0.933721780434895 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
MMP1699 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.527368592674896 0.123231845551439 -0.123231845551439 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
RNA_27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.0706593795331894 -0.151917665996357 0.295591737713843 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
RNA_5 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.198487934394291 -0.0304714952588251 -0.52859579969823 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
[+] Show/hide bicluster #57 motif PSSM #1. bicluster 57 motif PSSM #1 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0.5 0.5 0
4 0.5 0 0 0.5
5 1 0 0 0
6 0 0 1 0
7 0 0.5 0.5 0
8 0 1 0 0
9 0.5 0 0 0.5
10 1 0 0 0
11 1 0 0 0
12 0 0 1 0
13 0 0 1 0
14 0 1 0 0
15 0 1 0 0
16 1 0 0 0
17 0.5 0 0.5 0
18 0 0 1 0
19 0 0 1 0
20 0 0.5 0.5 0 [+] Show/hide bicluster #57 motif PSSM #2. bicluster 57 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0 0.5 0.5 0
4 0 0 1 0
5 0 0 1 0
6 0 0 1 0 |