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bicluster 166
Methanococcus maripaludis S2
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bicluster 166 genes
Methanococcus maripaludis S2
23
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bicluster 166 short names
Methanococcus maripaludis S2
23
short_name
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bicluster 166 long names
Methanococcus maripaludis S2
23
long_name
[+] Show/hide bicluster #166 rows (NCBI RefSeq gene IDs).
bicluster 166 NCBI RefSeq IDs
Methanococcus maripaludis S2
46
[+] Show/hide bicluster #166 gene upstream sequences.
bicluster 166 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 166 arrays
Methanococcus maripaludis S2
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bicluster 166 ratios
Methanococcus maripaludis S2
23x40
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0018 0.313412541023119 -0.961053123375032 0.511443799198657 -2.05386261631052 1.64350478829197 -0.0229326249529111 0.634469290363875 0.328700957658393 0.00764420831763706 -0.114663124764556 0.772065040081342 -1.0931217894221 -0.0840862914940075 0.252258874482023 0.0535094582234594 0.848507123257712 0.817930289987164 1.0931217894221 0.0840862914940076 2.30090670360875 0.558027207187505 -0.252258874482023 0.558027207187505 0.817930289987164 1.93398470436217 2.14802253725601 1.21542912250429 2.7442707860317 -0.007644208317637 0.0382210415881853 -0.435719874105312 -0.787353456716616 -1.16956387259847 -1.21542912250429 -0.695622956904971 -0.282835707752571 -0.772065040081342 -0.420431457470038 -1.20014070586902 -1.27658278904539
MMP0097 0.624988902287965 0.15751212158993 1.32111963916104 -2.31755672838056 -0.149453867938426 0.597815471753706 0.570642041219446 0.149453867938426 -0.217387444274075 -0.42118817328102 1.08693722137037 -0.80161620076065 -1.12769736717176 -0.747269339692132 -0.271734305342593 -0.122280437404167 0.258147590075464 0.244560874808334 0.84237634656204 2.28256816487778 0.434774888548149 -0.163040583205556 0.557055325952316 0.896723207630558 1.83420656106251 1.45377853358287 1.79344641526112 1.86137999159676 0.774442770226391 0.0271734305342594 -0.788029485493521 -1.18204422824028 -1.67116597785695 -1.46736524885 -1.53529882518565 -0.991830214500466 -0.81520291602778 -0.489121749616668 -0.516295180150927 -0.597815471753705
MMP0238 0.352545006900711 -0.605328601490725 0.25180968900845 -0.96997304116452 1.04661798923649 0.661021887938833 0.793226265526599 0.605936730610597 0.760175171129658 0.0220340629312944 0.991532831908249 -0.242374692244239 -0.572885636213655 -0.330510943969416 -0.683055950870127 -0.0220340629312944 -0.0330510943969417 0.319493912503769 0.264408755175533 1.31102674441202 0.638987825007539 0.0661021887938833 0.650004856473186 1.03560095777084 1.7957761289005 1.54238440519061 1.69662284570967 1.49831627932802 0.418647195694594 -0.0440681258625887 -0.0440681258625887 -0.27542578664118 -0.826277359923541 -1.20085642975555 -0.991532831908249 -1.06865205216778 -1.1678053353586 -0.848311422854836 -0.506783447419772 -0.67203891940448
MMP0538 0.621488883232662 -0.654183393540662 0.429620815362204 -1.50646768064382 1.22571418637553 0.155372220808166 0.397062342065312 0.207162961077554 -0.241690121257146 -0.0345271601795924 0.673279623502051 -1.86446664969799 -1.27750492664492 -0.984024065118382 -0.517907402693885 0.0345271601795924 0.397062342065312 0.138108640718369 0.189899380987758 1.74362158906941 0.58696172305307 -0.241690121257146 0.241690121257146 0.397062342065312 1.19118702619594 1.67456726871023 0.345271601795924 2.36511047230208 -0.189899380987758 -0.0345271601795924 -0.673279623502051 -1.15665986601634 -1.65730368862043 -1.67456726871023 -0.966760485028586 -0.500643822604089 -0.966760485028586 -0.241690121257146 -1.12213270583675 -1.20845060628573
MMP0547 0.400226993407928 -0.803869198793168 0.796071938986314 -2.71912994876888 0.400226993407928 -0.250141870879955 0.125070935439978 0.050028374175991 -0.11256384189598 -0.675383051375879 -0.262648964423953 -1.22569516731178 -0.550312115935901 -0.300170245055946 0 0.200113496703964 0.450255367583919 0.250141870879955 0.425241180495924 1.58840088008771 0.487776648215912 0.88800364162384 0.787946893271859 1.03808876415181 1.77600728324768 2.01364206058364 1.77600728324768 1.60090797363171 0.375212806319933 -0.337691525687939 -0.300170245055946 -0.650368864287883 -0.825468173903852 -0.525297928847906 -0.61284758365589 -0.375212806319933 -0.275156057967951 -0.262648964423953 -0.300170245055946 -0.300170245055946
MMP0558 -0.0453958816272669 -0.353776839243733 0.587777628391357 -0.581080025939794 0.998709395799874 0.484222737357514 0.756598027121116 0.348035092475714 0.393430974102981 0.317771171390869 0.938181553630184 -0.438826855730247 -1.08950115905441 -0.998709395799874 -0.892785672002917 0.105923723796956 0.423694895187825 0.438826855730247 0.211847447593913 1.8309672256331 0.287507250306024 -0.211847447593913 0.590146461154471 1.05923723796956 1.45266821207254 1.84609918617552 1.84609918617552 1.99741879159975 0.272375289763602 -0.121055684339379 -0.938181553630184 -1.67964762020888 -1.51319605424223 -1.54345997532708 -1.4224042909877 -1.04410527742714 -0.892785672002917 -0.605278421696893 -1.08950115905441 -1.18029292230894
MMP0652 -0.0393519030315369 -0.986128748793808 -0.101055608281181 0.253142876847667 0.185516114291531 0.0955689073623039 0.54530494200844 0.0056217004330767 0.0168651012992301 -0.00562170043307669 0.713955955000741 -0.826389963662274 -0.421627532480752 -0.444114334213059 0.0281085021653835 0.219246316889991 1.01752777838688 0.995040976654576 0.725199355866894 2.16435466673453 0.815146562796121 0.0955689073623039 0.713955955000741 0.905093769725348 1.07374478271765 2.51290009358528 2.45668308925452 2.13062446413607 0.54530494200844 -0.275463321220758 -0.691469153268434 -1.02877117925304 -1.10747498531611 -0.702712554134587 -0.950067373189962 -0.747686157599201 -0.792659761063814 -1.07374478271765 -0.972554174922269 -0.68022575240228
MMP0756 0.360898057724902 -1.54526981238382 1.04829050937504 -1.21440815825314 1.93572594597902 -0.150921005957686 0.360898057724902 0.0065617828677255 -0.321527360518549 -0.229662400370392 0.675863635375726 -1.60763680259275 -1.25330052773557 -0.925211384349295 -1.10894130464561 0.137797440222235 0.439639452137608 0.400268754931255 1.04332347596835 1.20080626479377 0.59712224096302 0.308403794783098 0.925211384349295 0.964582081555648 1.67325463127 1.67325463127 1.16143556758741 2.25069152362985 1.08269417317471 0.0721796115449805 -0.544627978021216 -1.0301999102329 -1.34516548788373 -1.34516548788373 -0.925211384349295 -0.518380846550314 -0.898964252878393 -0.505257280814863 -1.003952778762 -0.767728595523883
MMP0758 0.266261941835311 -1.47705970373974 0.368214860272468 0.486880157588283 1.38326325880296 0.74683227587953 1.37027487139636 0.396145815901316 0.0844245181429035 0.0194825811099008 1.03257679882474 -1.13648389807755 -0.98062324919834 -0.941658086978538 -0.759820663286131 -0.149366455175906 -0.279250329241911 0.474076140340919 1.00660002401154 1.48717035805576 0.305227104055112 0.25327355442871 1.20142583511055 0.526029689967321 1.42222842102276 1.57808906990196 1.18843744770395 1.81188004322077 1.04556518623134 0.175343229989107 -0.629936789220126 -1.20142583511055 -1.61705423212177 -1.55211229508876 -1.34429809658315 -0.889704537352136 -1.04556518623134 -0.720855501066329 -1.48717035805576 -1.14947228548415
MMP0759 0.144662321588608 -0.226060766251272 0.402593805930867 -1.078027925629 1.34825283720583 0.549716822036712 0.711738622215954 0.329830093222027 0.538143836309624 0.248819193132407 1.0705011797557 -1.90375615210609 -1.08207416548279 -1.05892819402861 -0.954771322484816 -0.457132936220003 -0.167808293042786 0.0405054500448104 0.815895493759752 1.46398269447672 0.734884593670131 1.30196089429748 1.44083672302254 0.734884593670131 1.29038790857039 1.42926373729545 0.850614450941018 1.52184762311216 0.839041465213929 0.295111136040761 -0.873760422395195 -1.30196089429748 -1.49870165165798 -1.51027463738507 -1.35982582293292 -0.989490279666082 -1.29038790857039 -1.12836610839115 -1.55656658029343 -1.18623103702659
MMP0813 0.156550315950639 -0.351101029393872 0.683981918955766 -0.853656336329533 0.407030821471661 -0.194122391778792 0.0939301895703834 0.106454214846434 -0.194122391778792 -0.469650947851917 0.39450679619561 -1.32128466662339 0.206646417054843 0.16907434122669 -0.16907434122669 0.331886669815355 0.494698998404019 0.569843150060326 0.194122391778792 1.52166907104021 0.0814061642943322 0.244218492882997 0.50722302368007 0.895467807237655 1.89738982932174 1.960009955702 1.30876064134734 1.59681322269652 0.206646417054843 -0.219170442330895 -0.607415225888479 -0.857895731409502 -1.08332818637842 -1.13342428748263 -0.933039883065808 -0.607415225888479 -1.00818403472211 -0.970611958893962 -1.09585221165447 -1.20856843913893
MMP0842 -0.494958052090926 -1.14643479561399 0.199147287780278 -0.0795585943165122 1.3833757976474 -0.0253745896563441 0.406134537986244 -0.190363373754981 -0.190363373754981 -0.355352157853618 0.926483780143483 0.114231304580964 -0.634563946328233 -0.418809382506939 -0.558415276744247 0.418825982916909 0.723420661252853 0.748803551114182 0.164997084303621 1.70066192091401 0.304602978540929 -0.152289038962988 0.736112106183518 1.3833757976474 1.84026781515132 2.1321710485566 1.64989614119135 1.94179937459663 0.0761569697889708 0.0253911900663133 -0.533032386882919 -0.837627065218863 -1.1802960783468 -1.19298752327747 -0.761478395634877 -0.355352157853618 -0.698021170981555 -0.126906149101659 -0.888392844941521 -1.06607307397082
MMP0864 -0.0281270091129248 -0.852277628211099 0.328032415738198 -0.593749649051446 -0.196889063790474 0.553164512554188 0.0562540182258496 0.48753482462403 0.168762054677549 -0.281270091129248 0.384402457876639 -1.34072076771608 -0.656296879301579 -0.600042861075729 -0.318772769946481 -0.187513394086165 0.178137724381857 0.440656476102489 0.243767412312015 1.21883706156007 0.281270091129248 0.0187513394086165 0.712550897527428 0.956318309839443 1.60323951943671 1.64074219825395 1.50010715268932 1.96889063790474 0.225016072903398 -0.0937566970430827 -0.843810273387744 -0.956318309839443 -1.1344560342213 -1.09695335540407 -1.08757768569976 -0.834434603683436 -0.993820988656676 -0.675048218710195 -1.07820201599545 -0.928191300726518
MMP0871 -0.0919544184789652 -0.76225415197278 -0.347557598272739 -3.31634894157956 0.712646743211981 0.34482906929612 0.494254999324438 0.586209417803403 0.390806278535602 0.229886046197413 0.310346162366508 -0.402300580845473 -0.459772092394826 -0.379311976225732 -0.482760697014567 0.0114943023098706 0.310346162366508 0.551726510873791 0.0574715115493532 0.551726510873791 0.482760697014567 0.0114943023098706 0.229886046197413 0.597703720113274 0.965521394029135 1.11494732405745 0.839084068620558 1.24138464946603 0.0114943023098706 -0.0114943023098707 -0.34482906929612 -0.425289185465214 -0.413794883155344 -0.35632337160599 -0.436783487775085 -0.310346162366508 -0.436783487775085 -0.229886046197413 -0.52873790625405 -0.609198022423145
MMP1268 0.157514275928075 -1.7100372506223 -0.103558906863454 -2.11482980757299 -0.353532461153611 -0.136337597893894 -0.161889934747979 -0.0724567557586837 0.0425287600846955 0.106409602219906 0.643008676155675 -1.36284976688994 -1.47783528273332 -0.966788545651633 -0.877355366662338 0.0425287600846955 -0.0852329241857258 0.528023160312296 0.936860549977645 1.81841617144355 0.91130821312356 0.604680170874549 0.630232507728633 0.872979707842434 1.78008766616242 1.46068345548637 2.15059655054665 1.94617785571397 0.770770360426097 0.0808572653658219 -0.0724567557586837 -0.928460040370506 -1.15843107205726 -1.13287873520318 -0.954012377224591 -0.583503492840369 -0.442965640142905 -0.276875450591358 -0.494070313851074 -0.455741808569948
MMP1291 0.227642021251138 -2.432425382044 0.0882046283382799 -1.31980809954812 0.130773076037888 0.634491591146788 0.411693017156313 0.440753700720288 0.169520654123188 -0.392319228113663 0.615117802104138 -1.74848446109916 -1.20601836790496 -1.18664457886231 -0.954159110350514 -0.305137177421738 -0.140459970559213 0.208268232208488 0.682926063753413 0.857290165137264 0.198581337687163 0.353571650028363 1.43850383641676 1.34163489120351 1.57412035971531 1.39975625833146 1.38038246928881 1.91316166796169 0.547309540454863 0.150146865080538 -0.169520654123188 -0.799168798009314 -1.54505967615134 -1.63224172684326 -1.52568588710869 -1.50631209806604 -1.36100868024616 -1.12852321173436 -0.954159110350514 -1.08977563364906
MMP1292 0.0935509762032939 -1.61009281978391 0.749712639932239 -0.611058287065761 -0.505175271497787 0.0280652928609882 0.233877440508235 0.439689588155481 0.00935509762032939 0.140326464304941 0.561305857219763 -0.823248590588986 -0.0748407809626351 -0.0280652928609881 0.1590366595456 0.290008026230211 0.654856833423057 0.636146638182398 0.346138611952187 1.22551778826315 0.551950759599434 0.720342516765363 1.24422798350381 1.20680759302249 1.67456247403896 1.88037462168621 1.64649718117797 1.88037462168621 0.290008026230211 -0.0467754881016469 -0.196457050026917 -0.804538395348327 -0.91679956679228 -1.06648112871755 -0.954219957273597 -0.795183297727998 -1.08519132395821 -1.00099544537524 -0.898089371551621 -1.01035054299557
MMP1294 -0.0239957910392185 -1.40532752535212 0.204057778623461 -2.5606465800218 1.1086055460119 0.551903193902026 0.513509928239276 0.417526764082402 0.446321713329464 0.0143974746235311 0.283150334262778 -0.926237534113835 -0.244757068600029 -0.0239957910392185 -0.158372220858842 0.436723396913777 0.6478863580589 0.734271205800087 0.12957727161178 0.801459420709898 0.302346967094153 -0.292748650678466 0.12957727161178 0.455920029745152 1.61731631604333 1.22378534300014 1.24298197583152 1.11820386242758 0.100782322364718 -0.225560435768654 -0.283150334262778 -0.417526764082402 -0.532706561070651 -0.676681307305962 -0.791861104294211 -0.83025436995696 -1.28137524149427 -1.07981059676483 -1.09900722959621 -0.839852686372648
MMP1296 -0.00822018769447708 -1.14637027788137 1.76020450801725 -0.0330823426609277 0.123302815417156 0.123302815417156 0.501431449363102 0.583633326307872 0.00822018769447708 -0.205504692361927 1.12616571414336 -2.01394598514688 -0.780917830975322 -0.682275578641597 -0.254825818528789 0.879560083309047 0.797358206364276 1.01108308642068 0.715156329419505 1.8659826066463 -0.00822018769447708 -0.33702769547356 0.682275578641597 0.830238957142185 2.42495536987074 2.2605516159812 1.91530373281316 2.0797074867027 0.682275578641597 0.238385443139835 -0.106862440028202 -0.452110323196239 -0.912440834086955 -0.978202335642772 -0.879560083309047 -0.616514077085781 -1.02752346180963 -0.961761960253818 -1.24124834186604 -1.04396383719859
MMP1604 -1.07171332424045 -2.59859110830072 -0.121558919428764 -1.68180220318926 0.650917908587757 0.282721919891652 0.611468338370317 0.453670057500558 0.466819914239705 0.322171490109092 0.466819914239705 -0.269572063152505 -0.361621060326532 -0.374770917065678 -0.282721919891652 0.585168624892024 0.782416475979223 0.887615329892396 -0.348471203587385 1.67660673424119 0.940214756848983 0.0723242120653064 0.742966905761783 1.16376232141448 1.70290644771949 1.92645401228498 1.71605630445863 1.79495544489351 -0.256422206413359 0.203822779456772 -0.532569197935438 -0.75611676250093 -1.24266146184935 -1.24266146184935 -0.940214756848983 -0.677217622066051 -1.15061246467533 -0.900765186631543 -1.30841074554509 -1.19006203489277
MMP1605 -0.262306458699264 -2.31588309828479 -0.752710343350186 -1.77907927193043 0.842141788455532 0.271510194092221 0.46478863734431 0.308325135664047 0.133454163197871 -0.0322130738753482 0.46478863734431 -0.639659609810486 -0.483196108130223 -0.40956622498657 -0.253102723306307 0.0874354862330881 0.326732606449961 0.43717743116544 -0.0506205446612614 0.750104434525966 0.455584901951353 0.768511905311879 1.16427252720901 0.888160465420315 1.41277338281884 1.29312482271041 1.05382770249353 1.68888544460754 -0.0782317508401313 -0.0966392216260446 -0.584437197452746 -0.648863345203443 -0.860549259241445 -0.943382877778055 -0.648863345203443 -0.391158754200657 -0.722493228347096 -0.455584901951353 -0.713289492954139 -0.851345523848489
MMP1653 -0.476263736304144 -0.453454921671125 0.745876258358864 -2.68051256629605 0.447104732040625 0.242991702195992 0.340188383074388 0.233272034108152 0.155514689405435 -0.213832697932473 -0.0194393361756794 -0.0680376766148777 -0.981686476871806 -0.699816102324456 -0.534581744831182 -0.087477012790557 0.0971966808783966 0.233272034108152 -0.57346041718254 0.369347387337907 0.456824400128464 0.0194393361756793 0.933088136432608 0.787293115115013 1.19551917480428 1.23439784715564 1.21495851097996 0.758134110851494 -0.563740749094701 -0.252711370283831 -0.709535770412296 -0.631778425709578 -1.10804216201372 -1.26355685141916 -1.01084548113533 -0.806732451290692 -0.942807804520448 -0.417945727777106 -0.194393361756793 -0.349908051162228
MMP1654 -0.282474228974125 -0.0432779010291219 0.926097554126444 -2.03984401874252 0.287591998531557 0.5861981177012 0.599771123118002 0.165434949780339 0.260445987697953 -0.228182207306917 0.477614074366784 -1.19186559189985 -0.87968646731341 -0.866113461896608 -0.676091386061381 0.409749047282774 0.559052106867596 0.681209155618813 0.0975699226963298 1.11554532895648 0.043277901029122 -0.920405483563816 1.2919943993749 1.03410729645566 1.72633057271256 1.91635264854779 1.73990357812936 1.63131953479495 0.0975699226963298 -0.160317180222907 -0.445350293975748 -0.961124499814222 -1.44975269481909 -1.4768987056527 -1.31402264065107 -0.920405483563816 -0.974697505231024 -0.716810402311787 -0.648945375227777 -0.771102423978994
[+] Show/hide bicluster #166 motif PSSM #1. bicluster 166 motif PSSM #1 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0.315789 0 0.473684 0.210526
2 0.157895 0.157895 0.684211 0
3 0.052632 0 0.947368 0
4 0 0.052632 0.947368 0
5 0 0.052632 0.947368 0
6 0.631579 0 0 0.368421
7 0 0.105263 0.526316 0.368421
8 0.071583 0.007365 0.270523 0.65053
9 0.229477 0.059996 0.007365 0.703162 [+] Show/hide bicluster #166 motif PSSM #2. bicluster 166 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0.6 0 0.4
2 0 0.4 0 0.6
3 0 0.8 0 0.2
4 0.2 0 0 0.8
5 0 0 0 1
6 0 0.8 0 0.2
7 0 0.2 0 0.8
8 0 1 0 0
9 0.6 0 0.4 0
10 0.2 0.4 0 0.4
11 1 0 0 0
12 0 0 0 1
13 0.8 0 0.2 0
14 0 0.4 0.2 0.4
15 0 0.6 0 0.4
16 0 0.6 0 0.4
17 0.4 0.6 0 0
18 0 0.6 0.4 0
19 0 0 1 0
20 0 0 0 1
21 1 0 0 0 |