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[+] Show/hide bicluster #165 rows and columns.
bicluster 165
Methanococcus maripaludis S2
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bicluster 165 genes
Methanococcus maripaludis S2
20
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bicluster 165 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #165 rows (long gene names).
bicluster 165 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #165 rows (NCBI RefSeq gene IDs).
bicluster 165 NCBI RefSeq IDs
Methanococcus maripaludis S2
0
[+] Show/hide bicluster #165 gene upstream sequences.
bicluster 165 upstream sequences
Methanococcus maripaludis S2
20
upstream
[+] Show/hide bicluster #165 columns (arrays; conditions).
bicluster 165 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #165 ratios.
bicluster 165 ratios
Methanococcus maripaludis S2
20x40
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
RNA_1 -0.619764869424844 -0.70408874949121 -0.694145303221585 -1.12437888357958 -0.960260712453359 -1.19306044318991 -1.19203534528527 -1.15533684029946 -1.310229130284 0.524416427974868 -1.44384782767106 -2.15215053558517 -0.0272424118428503 0.0340530148035629 0.183886279939239 1.19866612108541 -0.660628487189119 -1.0828858707533 -0.0544848236857004 -1.47790084247463 1.12374948851757 0.497174016132018 0.115780250332114 0.592522457581994 0.701492104953394 1.70265074017814 1.90015822603881 0.667439090149832 0.333719545074916 0.183886279939239 1.75032496090313 1.66178712241387 -0.217939294742802 -0.898999590814059 0.606143663503419 -0.817272355285508 -0.258802912507078 -0.538037633896293 1.26677215069254 1.0284010470676
RNA_13 -0.72202742617523 -0.762626635203239 -1.42333092630501 -1.16535355113124 -1.20199612546878 -1.0980996374162 -1.37155337939091 -1.25946352067901 -1.08558198779779 0.533015010946112 -0.585938487210265 -0.684224943129406 0.109627200832888 -0.177671670315371 0.162550677097041 1.36466963795423 -0.306200112671171 -0.427168058417806 0.381805078762818 -0.759829909221053 1.21345970577094 0.782511399048548 0.268397629625347 0.510333521118618 0.684224943129406 1.66708950232082 0.631301466865253 1.0924917600243 0.162550677097041 0.366684085544489 2.02999333956072 1.68221049553915 -0.3213211058895 -1.06981027019681 0.540575507555277 -1.18321771933428 -0.585938487210265 -1.08493126341514 0.601059480428594 0.782511399048548
RNA_16 -0.158481785797007 -0.709162456863611 -0.702727455061863 -1.09359833667894 -1.31039132104243 -1.08871661117417 -1.04189642565111 -1.25835656877944 -1.2956351999068 0.401732898880786 -0.880863879197319 -1.05777377962189 -0.0847693272867714 -0.114254310690866 -0.0036856229255118 0.762923945580942 -0.681840241219682 -0.733438962176847 -0.0405418521806298 -0.696582732921729 0.844007649942201 0.305906702817479 0.0405418521806298 0.578642799305352 0.342762932072597 1.86123957738346 0.991432566962673 1.2199411883444 0.210080506754172 0.61549902856047 2.06763446121212 1.99392200270188 -0.350134177923621 -1.16097122153622 0.527044078348187 -1.10937250057905 -0.51230158664614 -1.16834246738724 0.608127782709446 0.785037683134012
RNA_19 -0.552131034330993 -1.03910510525713 -0.793898238165659 -0.91454922661301 -0.716301123947936 -1.05302251923934 -1.39775393888086 -2.81522784965351 -2.69978337703372 0.0532174490921439 -1.57656692935476 -1.83600199367896 -0.432391773873669 -0.279391607733755 0.0731739925016977 1.20404478570976 -0.146347985003396 -0.106434898184288 0.485609222965813 -0.292695970006791 1.26391441593842 0.572087577740547 0.498913585238849 0.572087577740547 0.605348483423136 1.60982783503735 1.04439243843332 1.03774025729681 0.00665218113651799 0.0332609056825899 1.27721877821145 1.5898712916278 -0.405783049327597 -0.884740091156892 0.339261237962417 -0.997827170477697 -0.612000664559654 -1.09095770638895 0.731739925016978 0.671870294788316
RNA_2 -0.335410384293387 -1.36561326313126 -1.54572489916282 -1.48555170026336 -1.45485317336535 -1.33144712138511 -1.23415011841886 -1.59437340403393 -1.47535285299227 0.613225046031344 -1.29082178197758 -1.54153257427769 0.0304918531175807 -0.037267820477043 0.220218939182527 1.4127891944479 -0.423497959966398 -0.626776980750269 0.450601829404247 -0.518361502998871 1.14852646742887 0.17278716766629 0.17278716766629 0.437049894685323 0.504809568279946 1.43989306388575 0.83005600153414 0.823280034174677 0.118579428790591 0.281202645417688 1.53475660691823 1.49410080276145 -0.491257633561021 -0.965575348723387 0.437049894685323 -1.28404581461812 -0.904591642488226 -1.49410080276145 0.789400197377366 0.477705698842097
RNA_20 -0.499145649194079 -1.02201030448089 -1.54634746023055 -1.21212817152296 -1.17425068418091 -1.53466074130346 -1.5723295372361 -1.68366640762388 -1.34402114227157 1.06761708299845 -0.963628406083013 -0.783381366096263 0.145584147681606 -0.0623932061492599 -0.131718990759549 1.17160575991388 -0.443685021505848 -0.388224393817617 0.478347913810992 -0.915100356855811 1.54596499680944 0.644729796875685 0.485280492272021 0.776448787635234 0.374359236895559 1.07454966145947 0.92203293531684 0.207977353830866 0.214909932291895 0.443685021505848 1.33105506451754 1.13001028914771 -0.700190424563916 -1.35878537836166 0.055460627688231 -1.69154914449104 -1.25479670144623 -1.61529078141973 0.415954707661732 0.249572824597039
RNA_22 -0.97278936489061 -0.830938029063013 -0.723641899150242 -0.881891973329121 -0.674327852066207 -1.02456302816946 -1.33508926925511 -1.67443084654004 -0.974194757577225 0.225687132654621 -1.01948325440536 -0.863836956022862 -0.0544762044338742 -0.194557872978122 0.607020563691741 1.60315687333973 -0.0311292596764995 0.0311292596764995 0.832707696346362 0.33463954152237 1.5642452987441 0.863836956022861 0.778231491912488 1.15178260803048 0.918313160456736 1.75880317172222 0.459156580228368 1.29186427657473 -0.0544762044338742 0.186775558058997 1.7821501164796 1.85997326567085 -0.0622585193529991 -0.918313160456736 0.513632784662242 -1.18291186770698 -0.552544359257866 -1.21404112738348 0.793796121750738 0.762666862074238
RNA_23 -0.231497595439286 -0.754494162681584 -0.986149632013296 -1.42203508041568 -1.23893621679203 -0.904997156732693 -1.11945549860996 -1.34807617635109 -1.01941989888734 0.0224029931070277 -1.26950294273157 -1.8594484278833 -0.418189204664518 -0.597413149520739 0.0522736505830647 1.08281133350634 -0.089611972428111 -0.664622128841822 0.224029931070277 -0.567542492044702 0.619816142627767 0.29123891039136 0.09707963679712 0.380850882819471 0.649686800103804 1.72503046924113 0.933458046126155 1.47112988069482 0.477930519616591 0.821443080591017 1.82957777040726 1.72503046924113 -0.238965259808296 -0.470462855247582 0.0373383218450462 -1.15748797719643 -0.29870657476037 -1.10521432661337 0.619816142627767 0.313641903498388
RNA_24 0.113075257598375 -1.28264798809616 -1.03117165109671 -0.996823163866622 -1.21023765644168 -1.29966750706705 -1.64026424540358 -1.87750607276155 -1.09883714620403 0.277548359559649 -1.10676691528107 -0.791526803188628 -0.25698922181449 -0.380344048285445 0.469433645181134 1.15473823668644 -0.428315369690816 -0.825792032763893 0.0171326147876327 -0.531111058416612 1.12047300711117 0.243283129984383 0.250136175899436 0.558523242076824 0.421462323775763 1.43571311920361 0.551670196161771 1.00397122655527 0.154193533088694 0.41460927786071 2.00451593015302 1.43571311920361 -0.215870946324171 -0.695584160377885 0.517404966586505 -0.969705996980007 -0.722996344038097 -1.25068087949718 0.579082379821983 0.764114619528416
RNA_26 -0.570559684550664 -1.26005970809623 -1.00639891730054 -0.993429614382265 -0.757879109906875 -1.21928235859429 -0.892479394851648 -1.40096938176167 -1.15104748798563 0.85001748922854 -0.725814020482817 -1.19157702827928 -0.143610260737242 -0.15137297753385 0.135847543940634 1.69615362005878 0.0116440751949115 -0.174661127923673 0.811203905245502 -0.578322401347271 1.60300101849948 0.772390321262463 0.624898702126917 1.08289899312677 0.935407373991225 1.54866200092323 0.687000436499779 0.966458241177655 0.0194067919915192 0.166898411127065 1.71167905365199 1.47103483295715 -0.399779915025295 -0.764627604465856 0.0349322255847345 -1.50208570014358 -0.98198367477087 -1.39340766499108 0.345440897449041 0.438593499008334
RNA_27 -0.556440165774264 -1.13330223219497 -1.42242212186783 -1.46375328572485 -1.39863440355734 -1.43610005989636 -1.5244119674166 -1.36077228524648 -1.04518856224575 0.859354338858478 -1.07007724187358 -1.15568342122347 -0.023047817517277 -0.0164627267980552 0.0888987247094978 1.18202378410036 -0.266696174128493 -0.89886488317381 0.332547081320714 -1.08324742331203 1.34665105208091 0.437908532828267 0.233770720532383 0.760577978070147 0.668386708001039 1.35323614280013 0.806673613104702 1.10958778618892 0.332547081320714 0.424738351389823 1.90638376321479 1.3137255984848 -0.635461254404928 -1.18202378410036 -0.0428030896749432 -1.50469322934224 -0.714482343035593 -1.44542741286924 0.4181532606706 0.115239087586386
RNA_3 -0.651419622339684 -1.38270465592095 -1.02480169398214 -1.27825948933418 -1.44834991122549 -1.48746441289946 -1.73463033074627 -1.4276915765998 -1.20464452252302 0.992805306774385 -0.623551403202157 -0.832563046733607 0.00348352739219083 -0.149791677864206 0.372737430964418 1.52926852517177 -0.191594006570495 -0.107989349157916 0.797727772811698 -0.240363390061167 1.59893907301559 0.978871197205621 0.386671540533181 1.18788284073707 0.80469482759608 1.48746619646548 0.957970032852477 0.574782019711486 -0.142824623079824 0.21249517092364 1.70344489478131 1.4804991416811 -0.393638595317563 -0.839530101517988 0.512078526652051 -1.22271811465898 -0.665353731908447 -1.02067352591191 0.7210901701835 0.644452567555302
RNA_31 -0.48019378844483 -1.31735896200732 -1.22377514828966 -1.04946707932747 -1.39019852255355 -1.66513031433217 -1.66203275258255 -2.60669425729709 -1.46669883109155 1.19113004666185 -0.579974315913885 -0.342995563174878 0.12472565933632 0.012472565933632 0.286869016473535 0.891788464254684 -0.411594675809854 -0.0810716785686074 0.0561265467013438 -0.442776090643934 1.30338314006454 0.505138920312094 0.486430071411646 0.854370766453789 0.442776090643934 0.823189351619709 0.492666354378462 0.255687601639455 0.299341582407167 0.467721222511198 1.42810879940086 1.03522297249145 -0.798244219752445 -1.37821853566633 -0.174615923070847 -1.73368666477484 -1.17865748072822 -1.73368666477484 -0.149670791203583 -0.012472565933632
RNA_43 -0.494746451017363 -0.371575061544859 -1.48421281951631 -1.32304207908452 -1.17268562632663 -1.12478026024499 -1.12677236155689 -2.81645637586943 -2.78818746491616 -0.135503805055711 -0.891804112343399 -0.822476584175361 -0.431721425410055 -0.614493999671247 0.0346637640840191 1.09348419428678 -0.0220587589625576 0.0220587589625576 0.652309015035631 0.223738840905941 0.885501609782669 0.55777147662467 0.286763866513249 0.759451558568054 0.576678984306862 1.3833993120804 0.387603907484941 1.01155166099728 0.286763866513249 0.475838943335171 1.64810441963109 1.44012183512697 -0.21113383578448 -0.463233938213709 0.267856358831056 -1.09978669684751 -0.589283989428324 -1.12499670709044 0.330881384438364 0.589283989428324
RNA_5 -1.19691795109713 -0.852489844221198 -1.29643746133575 -0.990225392955243 -1.24244113721282 -1.25681354229811 -1.56601986173805 -1.37428798888108 -0.985434591260145 1.3825894338158 -1.00461534399565 -1.3162781899877 -0.00331556219140479 -0.182355920527263 0.122675801081977 1.44226955326108 -0.182355920527263 -0.275191661886598 0.500649890902123 -0.659796876089553 1.32954043875332 1.00461534399565 0.328240656949074 1.05103321467532 0.732739244300459 1.6610966578938 1.82024364308123 0.825574985659792 0.321609532566265 0.520543264050552 1.53510529462042 1.74067015048751 0.0431023084882623 -0.520543264050552 0.673059124855172 -0.825574985659793 -0.261929413120978 -0.40118302515998 1.44226955326108 1.0377709659097
RNA_50 -0.235944403235464 -0.620347946818745 -0.80851910299472 -0.777968045565028 -1.03191154840419 -1.38762703863726 -1.40543226951226 -1.69693216779047 -1.40377823460328 1.31547085091553 -0.436335540229969 -1.30900662068991 -0.0549459569178479 0.0226248057897021 -0.0484817266922188 1.08922279301851 -0.449264000681227 -0.947009728054672 0.358764777522418 -1.54171890881256 1.48354083678189 0.475120921583744 0.281194014814868 0.623798216773214 0.753082821285797 1.36718469272057 1.38011315317183 0.416942849553081 -0.0161605755640729 0.0161605755640729 1.73564581558143 1.19911470685421 -0.720761670157652 -0.940545497829043 0.526834763388777 -1.70332466445328 -1.11507971392103 -1.47707660655626 0.992259339634077 0.520370533163148
RNA_6 -0.181183302399324 -1.38103156349282 -1.4867868199205 -1.2573422863073 -1.28054558427623 -1.38241821765325 -1.27832694253299 -2.31683614675491 -2.03793440016141 0.838356636525685 -1.46482093634708 -1.87632199603367 -0.101339813206401 0.0522053583184493 -0.0644889720404372 0.905916511996619 -0.445280997422067 -0.875207477691649 0.193466916121312 -0.574258941502941 0.856782057108667 0.432997383700079 0.125907040650378 0.439139190561073 0.304019439619205 1.40340286773714 1.40954467459813 0.598826168946918 0.396146542534115 0.402288349395109 1.34812660598819 1.28056673051725 -0.420713769978091 -0.715520499305804 0.518982679753995 -1.09017071782644 -0.776938567915744 -1.02261084235551 1.36041021971018 0.598826168946918
RNA_7 -0.777845749652045 -1.16210325512673 -1.01066945249187 -0.868949496273263 -0.93244739533814 -1.02539360378731 -1.44411164606125 -1.41834438129423 -1.01302122326041 1.28055828654507 -1.1718636839736 -1.14469003333074 -0.112091308901823 -0.152851784866122 -0.0101901189910748 1.18545050929504 -0.0781242455982404 -0.268339800098304 -0.200405673491138 -0.872953526902076 1.38245947645582 0.988441542134258 0.268339800098304 0.709911623044879 0.621597258455564 1.73571693481308 2.04821391720604 0.66915114708058 0.675944559741297 0.608010433134131 1.85799836270598 1.84441153738454 -0.037363769633941 -0.363447577348335 0.560456544509115 -1.13110320800931 -0.431381703955501 -0.682737972402013 1.47756725370585 0.961267891491391
RNA_8 -0.7949596181222 -1.36242916643869 -1.66316419271739 -1.50328093783482 -1.62519545036761 -1.71620736621511 -1.65280051699977 -1.90831222479658 -1.04266266919261 0.90763106006078 -1.07037869841651 -1.84655974288228 -0.0563357209692896 0.0563357209692898 0.106411917386436 1.13923346849008 -0.569616734245041 -0.70106674984005 0.13145001559501 -1.23938586132437 0.976485830134356 0.406869095889315 0.0876333437300064 0.582135783349328 0.500761964171465 1.31450015595009 1.25190491042866 0.519540537827895 0.331754801263595 0.306716703055022 1.45220969609725 1.22060728766794 -0.419388144993602 -0.876333437300063 0.394350046785028 -1.12671441938579 -0.650990553422904 -0.707326274392194 1.37083587691938 0.669769127079334
RNA_9 -0.585037682438501 -0.291549843703813 -0.824923341907344 -0.388472383858298 -0.708951743981467 -0.959464768165884 -1.78827830819298 -1.22495346754992 -0.611190562258827 1.52428185288399 -0.449722844323474 -1.19793430213598 0.0119395445395613 -0.0119395445395613 0.0756171154172213 1.26957156937335 -0.577077986078794 -0.497481022481719 1.10241794581949 -0.998941893143291 1.89838758179024 0.855667358668556 0.258690131690494 0.919344929546216 0.688513735114699 1.86654879635141 1.44468488928691 0.608916771517624 -0.354206488006984 -0.242770738971079 1.86654879635141 1.65163699463931 -0.274609524409909 -0.975062804064169 0.696473431474407 -1.03874037494183 -0.640755556956454 -1.13425673125832 0.839747965949142 0.863627055028264
[+] Show/hide bicluster #165 motif PSSM #1. bicluster 165 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0.363636 0.090909 0.454545 0.090909
2 0 0 0.818182 0.181818
3 0.454545 0 0.545455 0
4 0 0 0.090909 0.909091
5 0.272727 0 0.363636 0.363636
6 0.090909 0 0.909091 0
7 0 0.454545 0 0.545455
8 0 0.636364 0.090909 0.272727
9 0.181818 0.363636 0.090909 0.363636
10 1 0 0 0
11 0 0 0.909091 0.090909
12 0.090909 0.636364 0 0.272727
13 0 0.818182 0 0.181818
14 0 0 0.181818 0.818182
15 0 0.090909 0.909091 0 [+] Show/hide bicluster #165 motif PSSM #2. bicluster 165 motif PSSM #2 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 0 0.714286 0.142857 0.142857
2 0.285714 0.714286 0 0
3 0 0.428571 0.428571 0.142857
4 0.142857 0.428571 0 0.428571
5 0 1 0 0
6 0 0.285714 0.285714 0.428571
7 0.571429 0.428571 0 0
8 0.285714 0.142857 0 0.571429
9 0 0.285714 0.714286 0
10 0.142857 0.857143 0 0
11 0 0.285714 0.285714 0.428571
12 0.714286 0.285714 0 0
13 0 1 0 0
14 0 0.857143 0.142857 0 |