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[+] Show/hide bicluster #161 rows and columns.
bicluster 161
Methanococcus maripaludis S2
14x40
[+] Show/hide bicluster #161 rows (genes).
bicluster 161 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #161 rows (short gene names).
bicluster 161 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #161 rows (long gene names).
bicluster 161 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #161 rows (NCBI RefSeq gene IDs).
bicluster 161 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #161 gene upstream sequences.
bicluster 161 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #161 columns (arrays; conditions).
bicluster 161 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #161 ratios.
bicluster 161 ratios
Methanococcus maripaludis S2
14x40
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0107 -0.00796920326281168 -0.709259090390239 1.05082652171657 1.52030479757793 2.51029902778568 -0.565813431659629 -0.517998212082759 -0.183291675044669 0.071722829365305 -0.549875025134006 -0.788951123018356 -0.916458375223343 -0.820827936069603 1.13959606658207 -1.07584244047958 -0.932396781748966 0.342675740300902 -0.231106894621539 0.804889529543979 0.613628651236499 0.438306179454642 2.86094397134939 0.231106894621539 2.36685336905507 0.231106894621539 -0.613628651236499 0.358614146826525 0.677382277338992 1.33085694488955 2.03214683201698 1.28304172531268 1.58587144929952 0.0876612358909284 -0.438306179454642 -1.0917808470052 -0.613628651236499 -0.438306179454642 -0.693320683864616 -0.948335188274589 -0.247045301147162
MMP0484 -0.518036936355339 -0.719869508961315 1.00818471510551 1.73849178027106 1.55411080906602 -0.42384840247255 -0.100916286302988 0.0201832572605976 0.396937392791753 0.0201832572605976 -0.141282800824183 -0.302748858908964 -0.329659868589761 0.639136479918925 -0.908246576726893 -0.544947946036135 -0.100916286302988 0.316204363749363 0.894791071886494 0.881335567046096 1.00243511060968 2.21343054624554 0.410392897632151 2.18651953656474 0.612225470238128 -0.235471334706972 0.652591984759323 0.975524100928885 2.06541999300116 2.37489660433032 1.80976540103359 2.61709569145749 0.289293354068566 -0.666047489599721 -1.35227823646004 -0.867880062205697 -0.840969052524901 -1.15044566385406 -1.27154520741765 -0.0201832572605976
MMP0519 -0.124123947586497 -0.151707047050163 0.373690742451895 1.11393354192434 1.55844511969713 -0.248247895172993 -0.0551661989273318 -0.0275830994636659 0.855076083373644 0.0689577486591649 -0.151707047050163 -0.013791549731833 -0.468912690882321 0.717160586055314 -0.786118334714479 -0.799909884446312 0.758535235250813 0.51028734007782 1.1722817272058 0.896450732569143 0.730952135787147 2.53764515065727 0.772326784982646 2.24802260628877 0.524078889809653 -0.151707047050163 0.689577486591648 1.06194932935114 1.87565076352928 2.48247895172993 1.80669301487012 2.57901979985277 0.537870439541486 -0.413746491954989 -0.841284533641811 -0.344788743295824 -0.386163392491323 -0.896450732569143 -0.855076083373644 -0.013791549731833
MMP0560 -0.159047454047451 -0.361471486471478 2.0364439775539 2.07452878687485 2.57367698367693 0.375930345930338 -0.477142362142352 -0.130129735129732 0.187965172965169 -0.404848064848056 -0.766319551319534 -0.780778410778393 -0.766319551319534 0.592813237813225 -0.694025254025239 -0.260259470259465 0.0433765783765774 0.650648675648661 1.3446739296739 0.751860691860675 0.694025254025239 2.38571181071176 0.216882891882887 2.02424032424028 0.390389205389197 -0.159047454047451 0.621730956730943 0.679566394566379 1.74952199452196 2.13991119991115 1.24346191346189 2.31341751341746 0.0289177189177183 -0.636189816189802 -1.17116761616759 -0.534977799977788 -0.607272097272084 -1.04103788103786 -1.25792077292075 -0.159047454047451
MMP0767 -0.14676866873739 -0.656596675930428 1.54587893159043 0.705262586445043 2.09338469620172 -0.301262004250432 -0.100420668083477 -0.177667335839998 0.208566002942607 -0.285812670699127 -0.579350008173907 -0.795640677892166 -0.51755267396869 0.903786012751295 -0.625698008827819 -0.455755339763473 -0.100420668083477 0.0695220009808689 1.12007668246955 0.51755267396869 0.579350008173907 2.52596603563823 0.857438012097382 2.52596603563823 0.486654006866082 -0.285812670699127 0.733843343686949 0.99648201405912 1.76894869162433 2.35602336657389 1.56810735545737 2.69590870470258 0.70294467658434 -0.363059338455648 -0.903786012751295 -0.471204673314778 -0.378508672006953 -0.981032680507816 -0.965583346956512 -0.0077246667756521
MMP0769 -0.077622471749702 -0.457110111414912 1.82368422357509 0.324321469738764 2.25105168074136 -0.215617977082505 0.0948719099163024 -0.0258741572499007 0.474359549581512 -0.112121348082903 -0.733101122080519 -0.646853931247516 -0.78484943658032 0.940094380079724 -0.922844941913123 -0.819348312913521 0.250116853415706 0.0948719099163024 0.940094380079724 0.577856178581115 0.508858425914713 1.40582921057794 0.836597751080121 2.61328988223997 0.146620224416104 -0.508858425914713 0.560606740414514 0.922844941913123 1.94056179374255 2.49254381507376 1.50932583957754 2.95827864557197 0.750350560247119 -0.319114606082108 -0.991842694579525 -0.664103369414117 -0.543357302247914 -1.14708763807893 -1.14708763807893 0.00862471908330023
MMP0782 -0.692033297648017 -0.819011884372424 1.03247222158228 1.19014771657515 1.78404914347792 -0.615846145613373 -0.311097537474797 -0.450773982871644 0.00634892933622035 -0.438076124199203 -0.704731156320458 -0.907896895079509 -0.615846145613373 0.590450428268492 -0.653939721630695 -0.717429014992898 0.311097537474797 0.222212526767712 0.298399678802356 0.476169700216526 0.577752569596051 2.25386991435822 0.247608244112593 2.16498490365114 0.273003961457475 -0.196816809422831 0.438076124199203 0.666637580303136 1.8094448608228 2.15228704497869 1.25073907923541 2.25386991435822 0.146025374733068 -0.311097537474797 -1.02217762313147 -0.514263276233847 -0.298399678802356 -0.907896895079509 -1.07296905782124 0.120629657388186
MMP0790 -0.441094479495969 -0.73783025919621 0.470862702049443 0.479795339225759 2.32843946437295 -0.568266956510358 -0.398703653824506 -0.31392200248158 0.307810107366544 -0.384573378600685 -0.794351360091495 -0.8650027362106 -0.384573378600685 0.858890841095563 -0.723699983972389 -0.441094479495969 0.279549556918902 0.39259175870947 1.04258441900524 0.717588088857353 0.858890841095563 2.03170368467271 0.519764235723859 2.27191836347766 0.632806437514427 -0.229140351138654 0.802369740200279 1.02845414378142 2.10235506079181 2.20126698735856 1.45236240049605 2.73821744586376 0.39259175870947 -0.412833929048327 -1.2041293415823 -0.582397231734179 -0.45522475471979 -0.822611910539137 -0.879133011434421 0.0110743276663029
MMP0896 0 -0.400135443928761 0.533444218309554 1.20120426855072 2.30077880259038 -0.250084652455476 0.166723101636984 0.183395411800682 0.533513925238348 -0.0333446203273968 -0.533513925238348 -0.650220096384237 -0.51684161507465 0.850287818348617 -1.0003386098219 -1.0336832301493 0.316773893110269 0.083361550818492 1.51718022489655 0.266756962619174 0.350118513437666 1.43381867407806 0.683564716711634 2.16740032128079 -0.116706171145889 -0.700237026875332 0.600203165893142 0.833615508184919 1.81728180784312 2.40081266357257 1.53385253506025 3.16773893110269 0.500169304910952 -0.41680775409246 -1.36712943342327 -0.850287818348617 -0.71690933703903 -1.15038940129519 -1.31711250293217 0
MMP0973 -0.30751005898334 -0.61502011796668 0.811938070045588 1.69576880495905 2.09665949306823 -0.503198278336374 -0.181710489399246 -0.265576869121975 0.209665949306823 -0.349443248844704 -0.517176008290163 -0.587064658059103 -0.377398708752281 0.642975577874256 -0.139777299537882 -0.531153738243951 0.754797417504561 0.433309628567433 1.80312716403867 0.76877514745835 0.670931037781832 2.69770188108112 0.754797417504561 2.52996912163566 0.642975577874256 -0.181710489399246 0.656953307828044 0.922530176950019 1.97085992348413 2.29234771242126 1.55152802487049 2.78156826080385 0.601042388012891 -0.363420978798493 -0.908552446996231 -0.349443248844704 -0.30751005898334 -0.964463366811384 -1.03435201658032 -0.0139777299537882
MMP0974 -0.481105448919031 -0.747563851397263 0.651411863159166 0.544462565961804 2.07985586378843 0.510711938083279 -0.25905678018717 -0.303466513933543 0.140630823530178 -0.451498959754783 -0.777170340561511 -0.762367095979387 -0.614334650158147 0.614334650158147 0.0962210897838062 -0.288663269351419 0.525515182665403 0.569924916411775 1.08803847678612 0.777170340561511 0.673547628486643 2.24269155419179 0.584728160993899 2.4351337337594 0.466302204336907 -0.466302204336907 0.451498959754783 0.747563851397263 1.62095528174258 2.22788830960967 1.70977474923533 2.28710128793816 0.318269758515667 -0.688350873068767 -1.28048065635373 -0.717957362233015 -0.569924916411775 -1.19166118886098 -1.33969363468222 -0.25905678018717
MMP1078 -0.329638850588999 -0.708723528766347 0.747698526603221 -0.0468951645722048 2.58766497712364 -0.329638850588999 0.181301367823949 -0.1318555402356 0.329638850588999 -0.0824097126472497 -0.395566620706799 -0.494458275883498 -0.461494390824598 1.0878082069437 -0.807615183943047 -0.543904103471848 0.741687413825247 0.527422160942398 0.708723528766347 1.1207720920026 0.807615183943047 2.25802612653464 0.494458275883498 2.34043583918189 0.461494390824598 -0.214265252882849 0.988916551766997 1.1537359770615 2.09320670124014 2.50525526447639 1.94486921847509 2.14265252882849 0.510940218412948 -0.461494390824598 -1.2855915172971 -0.774651298884147 -0.758169356354697 -1.1537359770615 -1.3515192874149 0
MMP1285 -0.156523391420649 -0.284290828558306 -0.109090896261158 0.755098358579748 1.87178467313965 -0.603709421402448 -0.364145476769341 -0.396087336053755 -0.220407109989477 -0.635651280686862 -0.843273366035554 -1.06686638102645 -0.987011732815418 0.530226583194256 0.370517286772185 -0.252348969273892 0.498284723909842 0.610081231405291 0.466342864625428 0.849645176038398 0.849645176038398 1.68013351743317 0.466342864625428 2.15926140669938 0.354546357129978 -0.124581532136235 0.530226583194256 0.610081231405291 1.83984281385524 2.28702884383704 1.66416258779096 2.51062185882794 0.370517286772185 -1.03492452174204 -1.53002334065046 -1.09880824031087 -1.1626919588797 -1.3862849738706 -1.14672102923749 0.1788661310657
MMP1536 -0.534059351176398 -0.750569898950614 0.690616064204712 0.67106321314577 2.36718198899809 -0.375284949475307 -0.447455132066712 -0.389718985993588 0.649531643322647 -0.41858705903015 -0.649531643322647 -0.851608154578581 -0.346416876438745 0.981514483243111 -0.663965679840928 -0.389718985993588 0.404153022511869 0.288680730365621 0.519625314658117 0.649531643322647 0.519625314658117 1.80425456478513 0.505191278139836 2.16510547774216 0.41858705903015 -0.288680730365621 0.721701825914052 0.822740081542019 1.94859492996794 2.30944584292497 1.70321630915716 2.17953951426044 0.41858705903015 -0.187642474737653 -0.56292742421296 -0.202076511255934 -0.101038255627967 -0.938212373688267 -1.18359099449904 -0.173208438219372
[+] Show/hide bicluster #161 motif PSSM #1. bicluster 161 motif PSSM #1 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0.8 0 0.2
2 0 0.2 0.4 0.4
3 0 0.2 0.8 0
4 0.2 0 0.8 0
5 0.4 0 0 0.6
6 0.2 0.2 0 0.6
7 0 0.6 0.2 0.2
8 0.8 0 0.2 0
9 1 0 0 0
10 1 0 0 0
11 0 0 0 1
12 0 1 0 0
13 0 1 0 0
14 0 0.8 0.2 0
15 0 0 0.8 0.2
16 0.4 0 0.6 0
17 0.4 0.6 0 0
18 0.2 0.2 0.2 0.4
19 0.2 0.4 0.4 0
20 0.2 0 0.4 0.4
21 0.2 0.4 0.4 0
22 0 0.6 0.4 0
23 0.4 0.6 0 0
24 0.8 0 0.2 0 [+] Show/hide bicluster #161 motif PSSM #2. bicluster 161 motif PSSM #2 Methanococcus maripaludis S2 13x4
POSITION A C G T
1 0.888889 0.111111 0 0
2 0.222222 0 0.111111 0.666667
3 0 0.111111 0 0.888889
4 0.222222 0 0 0.777778
5 0.555556 0.111111 0.111111 0.222222
6 0.111111 0.111111 0 0.777778
7 0.222222 0.222222 0.555556 0
8 0.777778 0.111111 0 0.111111
9 0 0.111111 0.888889 0
10 0 0.111111 0.888889 0
11 0 0 0.888889 0.111111
12 0 0 1 0
13 0.555556 0 0.333333 0.111111 |