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[+] Show/hide bicluster #160 rows and columns.
bicluster 160
Methanococcus maripaludis S2
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bicluster 160 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #160 rows (short gene names).
bicluster 160 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #160 rows (long gene names).
bicluster 160 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #160 rows (NCBI RefSeq gene IDs).
bicluster 160 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #160 gene upstream sequences.
bicluster 160 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #160 columns (arrays; conditions).
bicluster 160 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #160 ratios.
bicluster 160 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0038 0.169706849603135 -0.0909143837159651 -0.106917121415731 0.558945261600144 0.628277413095228 0.117591348903029 0.642461644926154 0.806107535614892 0.921265754988448 0.981875344132424 0.921265754988448 0.878839042587664 0.878839042587664 0.393962329435849 -1.33947192008189 -1.54554452317141 -1.48493493402743 -1.60009315340099 -1.25461849528032 -1.18188698830755 -1.3031061665955 -0.903082878245254 -0.0969753426303628 0.23637739766151 0.278804110062293 0.484876713151815 1.15158219373556 0.466693836408621 0.0363657534863861 -0.545486302295791 -0.842473289101278 -0.921265754988447 -0.781863699957301 -0.393962329435849 -0.139402055031147 0.115158219373556 0.0606095891439769
MMP0039 0.0893102794915714 -0.135906947052391 0.263967372528658 1.03416626899039 1.00856700729805 0.292488928694853 0.656236401481546 0.928050295586329 0.943582518106602 1.01347751944783 1.16103363339043 1.09890474330934 0.865921405505236 0.57857528888018 -1.19986418969111 -1.67359697655945 -1.60370197521822 -1.38625085993439 -1.26975919103234 -0.368890284856491 -1.39401697119453 -0.609639733920727 -0.104842502011845 -0.190269725873348 -0.0194152781503416 0.656236401481546 1.4949764175763 0.500914176278814 -0.198035837133485 -0.850389182984963 -1.1765658559107 -1.28529141355261 -1.14550141087016 -0.67176862400182 -0.384422507376764 0.0194152781503416 0.0504797231908881
MMP0040 0.14622046723453 0.107228342638655 -0.158152044363493 0.544648677005858 0.392839812983435 -0.164901275692729 0.14622046723453 0.419165339405653 0.542640400625922 0.802587897931753 0.802587897931753 0.718104961307358 0.43866140170359 0.172215216965113 -0.77659314820117 -1.71890282593481 -1.5759317024166 -1.1080262072661 -0.698608899009421 0.289191590752737 -0.412666651973007 -0.0227454060142602 0.14622046723453 -0.0162467185816145 0.0812335929080722 0.770094460768525 1.49794745322485 0.503648276030048 -0.666115461846192 -1.36147501713929 -1.46545401606162 -1.51744351552279 -1.24449864335167 -0.666115461846192 -0.471154838866819 -0.0682362180427807 0.00324934371632289
MMP0041 -0.108328351537501 -0.0112063811935346 -0.320988575183898 0.286233664869329 0.315920085859399 -0.226531781124586 0.100857430741811 0.429577945752159 0.451990708139228 0.728414777579747 0.795653064740955 0.810594906332334 0.65370556962285 0.38475242097802 -0.92265871826768 -1.84158197613751 -1.65480895624527 -1.02725160940734 -0.773240302353885 0.444519787343538 -0.295101371429744 0.183037559494398 0.272688609042675 -0.0485609851719831 0.078444668354742 1.01978068861165 1.72951816420217 0.459461628934917 -1.22149555009527 -1.9237621048901 -1.96858762966424 -2.02835499602976 -1.79675645136338 -0.952542401450439 -0.758298460762506 -0.235334005064226 -0.183037559494398
MMP0086 0.411958923699695 0.267773300404801 -0.428856778419686 0.338312408971515 0.488056892694107 -1.13138471867019 0.381062004422218 0.401659950607202 0.319268165867263 0.597340439364557 0.411958923699695 0.278072273497294 -0.0308969192774771 0.133886650202401 0.494350708439633 -0.78272195502942 -0.082391784739939 -0.185381515664862 -0.0720928116474466 0.0308969192774771 -0.39136097751471 0.102989730924924 0.381062004422218 0.679732224104496 1.45215520604142 1.22557779800659 0.494350708439633 -0.494350708439633 -0.617938385549542 -0.772422981936927 -1.12258806708167 -1.2152788249141 -1.46245417913392 -1.26677369037656 -1.11228909398918 -0.504649681532126 -0.514948654624618
MMP0234 0.0555656301331111 -0.0397988922710094 -0.28275390163777 0.650894942565659 0.632365503159012 -0.36169975696563 -0.299883953373156 0.185608160684185 0.228955670867876 0.567066250300667 0.671100274741526 0.809812307329338 0.376337205492426 0.480371229933285 -0.837393079650927 -2.11180987905145 -1.81704680980235 -1.16683415704698 -0.87207108779788 0.0295571240228965 -0.308553455409895 1.00054135213758 0.480371229933285 0.350328699382211 0.471701727896547 0.775134299182385 0.393676209565902 -0.499282500218136 -0.568638516512042 -1.08880863871634 -1.24485967537762 -1.35756320185522 -1.36623270389196 -0.637994532805948 -0.568638516512042 0.185608160684185 -0.0224598881975329
MMP0235 0.166354699983397 0.121393970258155 -0.579100484371139 0.839994803143041 0.793977406347796 -0.388669673305712 -0.0134882189175728 0.526040537785337 0.481079808060095 0.535032683730386 0.75084418641155 0.849757791807083 0.445111224279901 0.615961997235822 -0.714875602631356 -2.14462680789407 -1.9647838889931 -1.20045148366397 -1.11053002421349 -0.0404646567527183 -0.50805624589524 0.481079808060095 0.103409678368058 0.373174056719513 0.0404646567527183 0.283252597269028 0.103409678368058 -0.597977705345725 -0.400150494554658 -1.01161641881796 -1.51517659174067 -1.68602736469659 -1.64106663497135 -0.894718521532326 -0.579993413455628 0.121393970258155 0.0134882189175728
MMP0237 0.00394346285591324 -0.185342754227922 0.0311765598971589 1.01124682678468 0.917822003770544 -0.0966741733120043 0.232664308498881 0.524480559836461 0.492932856989155 0.421950525582717 0.390402822735411 0.14590812566879 -0.0512650171268719 0.603349816954725 -0.327307417040799 -1.09233921108797 -1.28951235388363 -1.06079150824066 -0.429837451294543 0.642784445513858 0.303646639905319 -0.350968194176278 -0.232664308498881 -0.114360422821484 0.177455828516096 0.00394346285591324 0.335194342752625 -0.153795051380616 -0.193229679939749 -0.500819782700981 -0.879392216868652 -0.855731439733172 -0.753201405479428 -0.398289748447237 0.0433780914150457 0.216890457075228 -0.0828127199741778
MMP0238 0.352545006900711 -0.253391723709886 -0.605328601490725 0.435375577459379 0.25180968900845 -0.90845276965501 0.683055950870127 0.661021887938833 0.793226265526599 0.605936730610597 0.760175171129658 0.3966131327633 0.0220340629312944 0.991532831908249 -0.242374692244239 -0.572885636213655 -0.330510943969416 -0.683055950870127 -0.176272503450355 -0.0220340629312944 -0.815260328457894 -0.143221409053414 0.650004856473186 1.03560095777084 1.7957761289005 1.69662284570967 1.49831627932802 0.418647195694594 -0.27542578664118 -0.826277359923541 -1.20085642975555 -0.991532831908249 -1.06865205216778 -1.1678053353586 -0.848311422854836 -0.506783447419772 -0.67203891940448
MMP0240 0.367248846818582 -0.325661777157517 -1.02147625901032 0.0143541055160808 -0.297468167748761 -1.6365052653055 0.357206663862407 0.718725250284719 0.768936165065596 0.799062713934122 0.638387786635316 0.548008140029738 0.357206663862407 0.0458989922209712 0.477712859336511 -0.14490248394636 -0.55663198514955 -0.466252338543971 -0.446167972631621 -0.456210155587796 -0.255366496464289 0.266827017256829 0.327080114993881 0.969779824189103 1.06015947079468 0.799062713934122 0.909526726452051 0.206573919519777 -0.134860300990185 -0.385914874894569 -0.5767163510619 -0.938234937484213 -0.958319303396563 -0.837813107922459 -0.606842899930426 -0.12481811803401 -0.245324313508114
MMP0299 -0.457839551837128 -0.592939747461198 -1.07441275680088 -0.754782876697725 -0.87769427262806 -1.08073907364652 0.99323662338437 0.918180959148775 0.778077052575665 0.748054786881427 0.843125294913181 0.748054786881427 0.592939747461198 0.973221779588211 -1.33849267886811 -1.10331826426324 -0.918180959148775 -0.783080763524705 -0.683006544543912 -0.41780986424481 -0.602947169359277 0.913177248199736 1.18337763944788 1.13334052995748 1.09331084236516 1.21840361609115 1.46858916354314 0.387787598550573 0.0325241211687577 -0.482858106582326 -0.537898927021762 -0.783080763524705 -0.647980567900634 -0.502872950378485 -0.537898927021762 -0.407802442346731 -0.462843262786167
MMP0452 -0.61415687729344 -0.859955158925325 -1.01718290561106 0.740882593467913 -0.000338826786272572 -0.752844133335162 0.000338826786272401 0.577964788621202 0.811473156171493 0.516515218213231 0.430485819642071 0.430485819642071 0.184687538010186 0.737733671681927 -0.429808166069526 -0.847665244843731 -0.896824901170108 -0.921404729333296 -0.429808166069526 0.77460341392671 0.713153843518739 -0.675606447701411 -0.184009884437641 0.074078311275838 0.995821867395406 1.06956135188497 1.88069568127019 0.233847194336563 -0.552707306885469 -0.958274471578079 -1.08117361239402 -0.884534987088514 -0.577287135048657 -0.7001862758646 -0.270039283008801 -0.589577049130252 -0.601866963211846
MMP0458 -0.13582915634543 0.0306710998199359 -1.6919136825835 1.25563041487564 0.264806082280089 -0.990475479506196 0.644093096218654 0.950804094418013 0.92451458028664 0.670382610350028 0.644093096218654 0.530171868316035 0.0832501280826833 0.407487469036291 -0.854409209269643 -1.78330537524485 -1.68691049009648 -1.39772583465137 -0.898225066155266 -0.398724297659167 0.302329412510797 -0.44254015454479 0.354908440773544 0.284803069756548 0.959567265795138 0.687908953104277 1.11730435058338 0.696672124481401 -0.854409209269643 -1.33638363501149 -1.39772583465137 -1.29256777812587 -1.01214629405789 -0.959567265795138 -0.600277239333031 -0.687908953104277 -0.758014324121273
MMP0595 0.328474815691005 -0.295070597146157 0.278041249014128 1.47030872603572 0.493567805786096 -0.478145267374512 -0.00556736975747466 0.016702109272424 0.139184243936866 0.194857941511613 0.00556736975747466 0.016702109272424 -0.0723758068471706 0.506630647930194 -0.88521179143847 -0.595708564049788 -0.573439085019889 -0.473226429385346 -0.172588462481714 -0.016702109272424 0.56230434550494 0.88521179143847 0.818403354348774 0.584573824534839 1.08563710270756 0.773864396288977 1.208119237372 0.473226429385346 -0.907481270468369 -1.13017606076735 -1.11904132125241 -0.88521179143847 -0.684786480169383 -0.684786480169383 -0.40641799229565 -0.528900126960092 -0.261666378601309
MMP0636 -0.363408787410993 -0.858487425333216 -1.07962054537889 0.434813694951639 0.668986575372073 -1.70461005101256 0.616214900392554 0.795285897087826 0.605681312351656 0.437143903697282 0.416076727615485 0.426610315656384 0.205404966797518 0.921688953578606 0.521412608024469 -0.721550780801538 -1.11129353831478 -0.679416428637944 -0.647815664515249 -0.110602674429433 0.826886661210521 0.300207259165603 0.9638233057422 0.363408787410993 0.289673671124705 0.331808023288299 0.479278255860876 0.279140083083807 -0.342341611329197 -0.437143903697282 -0.890088189455911 -1.09022636223298 -0.911155365537708 -0.732084368842436 -0.44767749173818 -0.279140083083807 -0.0684683222658393
MMP0656 0.136693640763623 -0.0439600676643657 0.501931229228038 0.103279599654317 0.0138511162597007 -0.160020811808633 0.267165763517171 0.668618448912702 0.528110009024266 0.347456300596277 0.237056812112506 0.206947860707841 -0.0138511162597008 0.44781947194516 -0.806720169915875 -1.28846339239051 -1.35871761233473 -0.465485387329674 -0.405267484520344 -0.294867996036573 0.869344791610468 -0.314940630306349 -0.304904313171461 0.016257835144964 0.317347349191613 0.44781947194516 -0.0439600676643657 -0.605993827218109 -0.555812241543668 -0.917119658399646 -1.16802758677185 -0.957264926939199 -0.907083341264758 -0.475521704464562 0.176838909303177 0.839235840205803 0.287238397786948
MMP0721 -0.121595553479667 -0.0342961817506754 -1.47859084952821 0.425281695429018 -0.218290108536811 -1.67540725191288 0.713984147354969 0.78257651085632 0.745162494401037 0.738926824991824 0.576799420352267 0.452086032167993 0.152773900525736 0.533149734487771 -0.283722958119223 -0.919761237859021 -1.39367211295926 -1.11306698954465 -0.770105172037892 -0.283722958119223 0.183952247571804 0.377257999257429 0.657863122672045 0.757633833219465 1.00706060958801 0.888582890812953 1.38743644355005 0.0592388593875302 -0.520678395669344 -0.988353601360372 -1.23778037772892 -1.23154470831971 -1.06318163427094 -0.969646593132731 -0.751398163810251 -0.701512808536541 -0.944703915495876
MMP0722 0.567436943996167 0.2636124385494 -0.908968867541531 1.25164597713604 0.641014044056077 -1.01603119909995 0.737221226451713 0.737221226451713 0.504884839933598 0.495948825067516 0.183188304754668 -0.0223400371652035 -0.299356498013726 1.07678979136281 -0.987429642701992 -1.10359783596105 -1.59507865359553 -1.01423768730024 -0.52275686966576 -0.344036572344133 -0.692541152121306 0.2636124385494 0.835517389978608 0.907005508907259 0.84445340484469 0.799773330514283 1.15721392515754 0.058084096629529 -0.209996349352912 -0.835517389978608 -0.987429642701992 -1.01423768730024 -0.790837315648201 -0.915941523773341 -0.817645360246446 -0.808709345380364 -1.05891776163064
MMP0723 -0.255939298757921 -0.248520768359141 -1.18722259838796 0.898586364290393 0.21009075563466 -1.4840148983395 0.47849521072133 0.738143774678641 0.634284349095717 0.515587862715232 0.248520768359141 0.189172525168898 -0.0927316299847539 0.723306713881081 0.248520768359141 -1.03488499062985 -1.48741534495545 -1.22776678099814 -0.715888183482301 -0.352380193942065 0.129824281978655 0.211428116365239 0.433984028328648 0.567517575506694 1.12390735541522 1.17583706820668 1.42064857136643 0.307869011549383 -0.285613420353042 -0.871677321856687 -1.14616294661156 -1.02004792983229 -0.827166139464005 -0.752980835476202 -0.448821089126209 -0.47107668032255 -0.752980835476202
MMP0783 0.39811832998479 0.169200290243536 -2.12724192484934 1.82975882163383 0.814217515096011 -0.455695994399675 0.696707077473383 0.537459745479466 0.617083411476425 0.457836079482508 0.288635789238973 -0.0298588747488593 -0.218965081491634 0.676801160974143 -1.12468428220703 -0.975389908462736 -0.905719200715397 -0.975389908462736 -0.676801160974143 0.0298588747488593 -0.199059164992395 0.517553828980227 0.855954409467299 0.437930162983269 1.54270852869106 0.935578075464256 1.5626144451903 0.985342866712355 -0.855954409467299 -1.20430794820399 -1.4630848626941 -1.42327302969562 -1.36355528019791 -1.63228515293764 -1.19435498995437 -1.30383753070019 -1.04506061621007
MMP1279 0.0764961378546768 0.416478972764351 0.803056897176082 0.854741138736476 0.786681691929225 -0.0604793085140974 0.382480689273384 0.654466957201123 0.450477256255319 0.620468673710156 0.96045150861983 0.824458374655961 0.569471248473705 0.127493563091128 -0.348482405782416 -0.535472964982737 -0.484475539746286 -0.00849957087274187 -0.22948841356403 -0.50147468149177 -0.484475539746286 -1.11344378432918 -0.3654815475279 0.00849957087274187 0.688465240692091 1.35143176876596 1.04544721734725 0.314484122291449 -0.756461807674026 -0.926453225128863 -0.824458374655961 -0.756461807674026 -1.21543863480209 -0.909454083383379 -0.603469531964672 -0.212489271818547 -0.671466098946607
MMP1608 -0.595465268551243 -0.830042495556278 -0.369681102737684 0.395946083291365 0.272913407305178 -0.0867693163006704 0 0.138340415926046 0.264651230467219 0.33682883877646 0.402991646393265 0.288710433236966 -0.0240592027697472 0.366902842238644 0.120296013848736 -0.715761282399978 -0.541332062319311 -0.16841441938823 -0.156384818003357 0.30074003462184 0.204503223542851 -0.992442114252071 -0.511258058857127 0.270666031159656 1.10672332740837 1.14281213156299 0.475169254702507 0.0060148006924368 -0.685687278937795 -1.11273812810081 -1.31122655095122 -1.32927095302853 -1.37738935856803 -1.19694533779492 -1.07063452325375 -0.553361663704185 -0.493213656779817
[+] Show/hide bicluster #160 motif PSSM #1. bicluster 160 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 1 0 0 0
2 0 0 0 1
3 0.428571 0 0.571429 0
4 0 0 0 1
5 0 0.571429 0.428571 0
6 0 0.428571 0.571429 0
7 0 0 1 0
8 0 0 1 0
9 0 0 0.428571 0.571429
10 0.714286 0.285714 0 0
11 0.142857 0 0 0.857143 [+] Show/hide bicluster #160 motif PSSM #2. bicluster 160 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.2 0.6 0.2 0
2 1 0 0 0
3 0 0.2 0.8 0
4 0 0 1 0
5 0.2 0 0.8 0
6 0.6 0.2 0.2 0
7 0 0 0.6 0.4
8 0.4 0 0.4 0.2
9 0.6 0.4 0 0
10 0 0 1 0
11 0 0 1 0 |