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[+] Show/hide bicluster #159 rows and columns.
bicluster 159
Methanococcus maripaludis S2
16x41
[+] Show/hide bicluster #159 rows (genes).
bicluster 159 genes
Methanococcus maripaludis S2
16
[+] Show/hide bicluster #159 rows (short gene names).
bicluster 159 short names
Methanococcus maripaludis S2
16
short_name
[+] Show/hide bicluster #159 rows (long gene names).
bicluster 159 long names
Methanococcus maripaludis S2
16
long_name
[+] Show/hide bicluster #159 rows (NCBI RefSeq gene IDs).
bicluster 159 NCBI RefSeq IDs
Methanococcus maripaludis S2
32
[+] Show/hide bicluster #159 gene upstream sequences.
bicluster 159 upstream sequences
Methanococcus maripaludis S2
16
upstream
[+] Show/hide bicluster #159 columns (arrays; conditions).
bicluster 159 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #159 ratios.
bicluster 159 ratios
Methanococcus maripaludis S2
16x41
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0115 -0.692827010327361 -0.32095819967242 -0.959358548423449 -1.35016188299668 -1.19217472033077 0.961874626077369 4.5026927761484 -0.409498392685501 -0.254553054912609 0.166012861899527 0.546735691855777 0.825637299846983 0.93188553146268 1.01599871482511 1.02042572447576 0.79022122264175 0.17929389085149 0.121742765392987 -0.0066405144759811 0.258980064563263 0.524600643602506 0.338666238275036 0.630848875218204 0.878761415654831 -0.0154945337772892 0.369655305829614 0.737097106833901 0.834491319148291 0.732670097183247 -0.20142893910476 -0.307677170720457 -0.621994855916896 -0.754805145436518 -0.936312541113334 -0.985009647270529 -0.927458521812026 -1.03813376307838 -1.05141479203034 -1.04698778237969 -0.980582637619875 -0.347520257576344
MMP0190 -0.785421205176896 -0.640217284892092 -0.435256268656665 -1.05416054853007 -1.00816493631856 -0.134546275944631 5.53473611344956 0.389410513491066 -0.039601069168583 0.0198005345842915 0.356409622517247 0.640217284892092 0.699618888644966 0.831622452540243 0.825022274345479 0.587415859333981 0.316808553348664 0.0594016037528745 0.389410513491066 0.0660017819476383 0.211205702232443 0.112203029310985 0.468612651828232 0.73921995781355 0.475212830022996 0.145203920284804 0.719419423229258 0.811821917955952 1.18803207505749 -0.244206593206262 -0.204605524037679 -0.646817463086856 -0.73921995781355 -1.06922886755174 -0.996626907409339 -0.976826372825048 -1.29363492617371 -1.12203029310985 -1.25403385700513 -1.19463225325225 -0.151804098479568
MMP0496 -0.407096545087763 -0.383610205948085 -1.35472485199244 -1.69302878239581 -1.63187247687539 0.507537534119898 4.31501805252475 0.211377052257108 -0.391438985661311 -0.133089255124846 -0.242692171110013 -0.117431695698393 0.0469726782793573 0.140918034838072 0.0313151188529049 -0.219205831970334 0.234863391396786 0.45406922336712 0.22703461168356 0.720247733616812 1.17431695698393 0.798535530749074 0.955111125013598 1.08820038013844 0.57932969877874 0.297493629102596 0.837679429315205 1.23694719468974 0.861165768454884 -0.0469726782793573 -0.587158478491966 -0.93162478587392 -1.1038579395649 -1.15865939755748 -1.15083061784425 -0.955111125013598 -1.08820038013844 -0.994255023579729 -1.00991258300618 -0.947282345300372 -0.618473597344871
MMP0543 -0.456507775182437 0 -0.599980919578807 -1.18283568824052 -1.68910030316846 0.597244198073981 3.24024597748455 0.14608248805838 -0.973883253722532 -0.194776650744506 0.389553301489013 0.566069641226222 0.645197655591177 0.657371196262709 0.693891818277304 0.286078205780994 0.152169258394146 0.103475095708019 -0.14608248805838 -0.0486941626861266 0.419987153167842 0.170429569401443 0.633024114919646 0.797366913985323 -0.298251746452526 1.06518480875902 1.1747466748028 0.979970024058298 0.803453684321089 -0.14608248805838 -0.127822177051082 -1.19909375614587 -1.08344511976632 -1.50343227293416 -1.43647779924073 -1.4425645695765 -1.40604394756191 -1.41213071789767 -1.21735406715317 -0.712152129284601 -0.139995717722614
MMP0546 -0.114876002851524 0.13363084204796 -0.592107063658391 -1.04448775060887 -1.31234199927645 0.266418804101764 4.60653044239903 0.423555494430691 -0.197711617818019 -0.149390842420897 0.0024744516843433 0.168145681617332 0.313108007808698 0.271690200325451 0.250981296583827 -0.142487874507022 -0.0251374199711549 0.720383114727296 0.803218729693791 0.485682205655562 0.630644531846927 0.464973301913938 0.879151376746411 0.872248408832536 0.561614852708182 0.0300863233398415 0.416652526516816 0.458070334000063 0.271690200325451 -0.998455895827466 -0.894911377119348 -1.41953693857381 -1.37121616317669 -1.50927552145418 -1.52308145728193 -1.53688739310968 -1.79229720592304 -1.60591707224843 -1.46095474605706 -1.38502209900444 -0.805172794238979
MMP0710 0.0839232542734613 -0.193023484828961 -0.26817950332126 -0.378454323743571 -0.604182952532663 -0.256053063048969 4.35704685672988 0.0755309288461152 0.310516040811807 0.00839232542734613 0.621032081623613 0.679778359615036 1.14135625811907 0.402831620512614 0.0755309288461152 -0.344085342521191 0.595855105341575 0.176238833974269 -0.00839232542734613 -0.0839232542734612 0.814055566452574 0.906371146153382 1.091002305555 1.22527951239253 0.360869993375883 0.595855105341575 1.09939463098234 1.34277206837538 1.63650345833249 0.0335693017093845 -0.570678129059537 -0.772093939315843 -1.14135625811907 -1.46026462435823 -1.46865694978557 -1.26724113952926 -1.25884881410192 -1.11617928183703 -1.35116439380273 -1.2924181158113 -0.528716501922806
MMP0785 -0.326720241481221 -0.234252248609177 -1.12412519668127 -1.39552268256814 -1.79032483865296 0.765636368000414 5.02550984722578 0.443846365785809 0.00616453285813624 0.308226642906812 0.628782351529896 0.782895672983302 0.856870067280937 0.789060205841438 0.764402074408893 0.400694635778855 0.37603650434631 0.351378372913766 0.314391175764948 -0.0554807957232261 -0.00616453285813624 -0.0801389271557711 0.388365570062583 0.542478891515989 0.271239445757994 0.72125034440194 0.955502593011117 0.949338060152981 1.10961591446452 -0.0369871971488174 -0.203429584318496 -0.462339964360218 -0.579466088664806 -1.09112231589011 -1.02947698730875 -0.949338060152981 -1.10345138160639 -0.930844461578572 -0.943173527294844 -0.918515395862299 -0.191100518602223
MMP1012 -0.327155197348316 -0.296956256054625 -0.695417445243448 -1.45464968261852 -1.70358573641907 -0.688902375980316 5.09102010732851 0.025165784411409 0.296956256054626 0.286889942290062 0.548614100168715 0.609011982756096 0.61907829652066 0.568746727697842 0.47814990381677 -0.0251657844114089 0.296956256054626 0.206359432173553 1.10226135721971 0.0654310394696633 0.286889942290062 1.37405182886293 0.347287824877443 0.296956256054626 0.0654310394696633 0.377486766171134 0.61907829652066 0.941200336986694 1.00159821957408 -0.286889942290062 -0.508348845110461 -0.679476179108041 -0.76000668922455 -1.30358763251098 -1.07206241592602 -1.04186347463233 -1.28345500498186 -0.951266650751258 -0.961332964515822 -1.12239398474884 -0.427818334993952
MMP1164 -0.940944351544321 -1.07009357626609 -0.770690846120095 -0.992016553909695 -1.34395312354691 0.533011064253423 4.08838500971931 0.215248707869616 -0.0122999261639781 0.0122999261639779 0.307498154099451 0.491997046559122 0.596546418952935 0.578096529706968 0.535046788133045 -0.0491997046559122 -0.0553496677379013 0.344397932591385 0.676495939018792 0.141449150885747 0.793345237576584 0.633446197444869 1.1746429486599 1.05779365010211 0.473547157313155 0.381297711083319 1.10084339167604 1.08854346551206 1.46984117659538 -0.461247231149177 -0.553496677379012 -0.37514774800133 -0.750295496002661 -1.32839202570963 -1.41449150885748 -1.33454198879162 -1.24229254256178 -0.983994093118244 -0.737995569838683 -0.842544942232496 -0.436647378821221
MMP1256 -0.085160079034377 -0.334089540827171 -0.497448871254262 -0.605316164777872 -1.52366719377812 0.462708131449403 4.91760783266405 1.23809653365363 -0.425800395171885 0.360292642068518 0.530612800137272 0.373394192689191 0.203074034620437 0.452003496413231 0.0851600790343769 -0.085160079034377 0.674729856964679 -0.0589569777930302 0.111363180275724 0.111363180275724 0.150667832137744 -0.216175585241111 0.569917451999292 0.347191091447844 -0.0720585284137036 0.386495743309864 1.00226862248151 1.51322909668777 1.57873684979114 -0.412698844551211 -0.268581787723804 -0.910557768136799 -1.02847172372286 -1.26429963489498 -0.871253116274779 -0.910557768136799 -1.40841669172239 -1.01537017310219 -1.32980738799835 -1.32980738799835 -0.189972483999764
MMP1293 -0.409959122352458 -0.453771547642034 -0.330685671103648 -0.916741833178427 -1.30251581454899 -0.192014294115397 4.39619967160393 -0.27226292858522 -0.0219062126447878 0.222191585397134 0.372405614961393 0.566432069815228 0.660315838292891 0.760458524669064 0.754199606770553 0.434994793946501 0.316075353874796 0.910672554233323 0.898154718436301 0.0093883768477662 0.316075353874796 0.0594597200358527 0.485066137134588 0.685351509886934 0.616503413003315 0.240968339092666 0.610244495104804 0.572690987713739 0.541396398221185 -0.647798002495869 -0.798012032060128 -1.05462766589907 -1.29872546394099 -1.62418919466356 -1.67426053785164 -1.63670703046058 -1.8244745674159 -1.71807296314122 -1.46771624720078 -1.33002005343355 -0.722905017277999
MMP1329 -0.974090107132572 -0.775615983427276 -1.02620555744118 -1.38382079321523 -1.76887232406881 0.353077642012846 3.84927949895861 -0.0391725244155189 -0.211531631843802 0.112294569991155 0.655486908553018 0.796507996448886 0.665932915063823 0.592810869488188 0.707716941107043 0.331660706718061 0.101848563480349 0.55624984670037 0.0235035146493114 -0.138409586268167 0.201085625332998 -0.195862622077595 0.389113742527489 0.540580836934162 0.154078596034375 0.953198094110962 1.47027541639581 1.82543963776319 1.79932462148617 -0.326437703462658 -0.707716941107043 -0.916637071323145 -0.613702882509798 -0.477904797869332 -0.848738029002912 -1.34492333826615 -1.41804538384179 -1.61651950754708 -1.40759937733098 -1.16211822432706 -0.676378921574628
MMP1331 -0.197207482461299 -0.485965814823689 -1.08411582994099 -1.56816345203863 -1.46348100758943 -0.0172987072936191 4.35030596107993 -0.122955339853827 0.413310134533468 0.570064657815909 0.594815372018399 0.636066562355883 0.825822037908311 0.957825846988261 0.966076085055757 0.751569895300839 0.314307277723506 0.223554658981041 0.0172987072936193 0.0833006118335941 0.0833006118335941 0.0585498976311036 0.240055135116034 0.421560372600965 -0.221958196663789 0.215304420913544 0.784570847570827 0.916574656650776 1.06507894186572 -0.461215100621198 -0.56021795743116 -0.84897628979355 -0.947979146603513 -1.28623890737088 -1.15423509829093 -1.26148819316839 -1.5007450971258 -1.42649295451833 -1.40174224031584 -1.53374604939579 -0.461215100621198
MMP1332 -0.334034810371394 -0.527990506716075 -1.35130844106948 -2.01553577252939 -2.09849323148259 -0.778391082057819 3.7768898411304 0.404074367384751 0.0808148734769502 0.140079114026714 0.382523734457564 0.630356013120212 0.732721519524348 0.738109177756145 0.684232595438178 0.436400316775531 0.495664557325294 0.258607595126241 0.134691455794917 -0.21011867104007 0.0215506329271867 -0.0215506329271867 0.344810126834987 0.544153481411465 0.1616297469539 0.522602848484278 0.942840190564419 0.959003165259809 0.996716772882386 -0.21011867104007 -0.587254747265838 -0.856637658855672 -0.985941456418792 -1.2930379756312 -1.20144778569066 -1.11524525398191 -1.36846519087636 -1.26609968447222 -1.24993670977683 -1.15834651983629 -0.538765823179668
MMP1338 -0.871068789673651 -0.17421375793473 -0.668791789876245 -1.10529083117843 -1.70558237496098 0.941881256759943 5.07846123747184 0.460422074541787 -0.373315195574422 -0.0746630391148844 0.0995507188198458 0.217767197418413 0.485309754246748 0.267542556828336 0.205323357565932 -0.0435534394836825 -0.33598367601698 0.591082392992834 -0.00622191992624037 0.373315195574422 0.796405750558767 0.528863193730431 0.765296150927565 0.983063348345977 0.273764476754576 0.597304312919075 1.05772638746086 1.04528254760838 0.989285268272218 -0.143104158303528 -0.223989117344653 -1.00795102805094 -0.927066069009814 -1.18216478598567 -1.15727710628071 -1.0017291081247 -1.28171550480551 -1.15727710628071 -1.13861134650199 -1.05150446753462 -0.130660318451048
MMP1553 -0.917357408095375 -0.535882050273536 -1.02091924225209 -1.13028641079029 -1.30308653102548 1.11046456366734 4.32667952704068 -0.0090827466148057 -0.00302758220493523 -0.0272482398444171 0.221013500960272 0.469275241764961 0.511661392634054 0.5843233655525 0.626709516421593 0.475330406174831 0.233123829780013 0.360282282387293 0.287620309468847 0.105965377172733 0.293675473878717 0.0151379110246761 0.445054584125479 0.614599187601852 0.00302758220493523 0.130186034812215 0.487440734994572 0.626709516421593 0.505606228224184 -0.656985338470945 -0.396613268846515 -0.596433694372241 -0.541937214683406 -0.547992379093277 -0.608544023191982 -0.808364448717707 -1.09295717598162 -1.06268135393227 -1.0566261895224 -0.887081586046023 -0.46322007735509
[+] Show/hide bicluster #159 motif PSSM #1. bicluster 159 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0.076923 0 0.923077 0
2 0.153846 0 0.846154 0
3 0 0 1 0
4 0 0.076923 0.923077 0
5 0.076923 0 0.923077 0
6 0.538462 0.076923 0.384615 0
7 0.615385 0 0.307692 0.076923
8 0 0 0.076923 0.923077 [+] Show/hide bicluster #159 motif PSSM #2. bicluster 159 motif PSSM #2 Methanococcus maripaludis S2 22x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0.5 0 0.5 0
4 0 0.5 0.5 0
5 0.5 0 0.5 0
6 0 0.5 0 0.5
7 0 0.5 0.5 0
8 0 0 1 0
9 0 0 0.5 0.5
10 0 0 1 0
11 0.5 0 0.5 0
12 0 0 1 0
13 0.5 0 0.5 0
14 0.5 0 0 0.5
15 1 0 0 0
16 0 0 1 0
17 0 1 0 0
18 0 1 0 0
19 0.5 0 0 0.5
20 0 0.5 0.5 0
21 0 0 1 0
22 0 0.5 0.5 0 |