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[+] Show/hide bicluster #157 rows and columns.
bicluster 157
Methanococcus maripaludis S2
18x37
[+] Show/hide bicluster #157 rows (genes).
bicluster 157 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #157 rows (short gene names).
bicluster 157 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #157 rows (long gene names).
bicluster 157 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #157 rows (NCBI RefSeq gene IDs).
bicluster 157 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #157 gene upstream sequences.
bicluster 157 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #157 columns (arrays; conditions).
bicluster 157 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #157 ratios.
bicluster 157 ratios
Methanococcus maripaludis S2
18x37
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0131 0.154164612676692 -0.395465745561949 1.11646728360488 -0.205560306174454 0.586001691404054 0.806944958205561 0.70040793415797 0.125551915270649 -5.11655386004298 -4.65348100653893 -0.180975849663943 0.0469196647276888 0.00670280924681269 0.0871365202085649 -0.00670280924681269 0.154164612676692 -0.154164612676692 -0.27481517911932 0.0469196647276888 -0.422276982549199 -0.690389352421707 -0.542927548991828 -0.167570231170317 0.315032034600196 0.180975849663943 -0.315032034600196 -0.207787086651193 -0.140758994183066 -0.288220797612946 -0.489305075017326 0.154164612676692 0.368654508574698 0.784228681877084 0.770823063383459 0.569738785979079 0.556333167485453 -0.0603252832213142
MMP0185 -0.556241076500096 -0.473834991092674 1.77755271288523 0.708073712020672 1.08792635503854 0.886681980030084 0.697065732019017 0.385586561448123 -5.08057055835051 -4.54381551322715 -0.319323580953759 -0.216315974194482 -0.0927068460833493 0.113308367435205 0.113308367435205 -0.370827384333397 -0.545940315824168 -0.206015213518554 -0.206015213518554 -0.36052662365747 -0.422331187713036 -0.278120538250048 -0.154511410138916 0.13390988878706 0.13390988878706 0.164812170814843 -0.144210649462988 -0.298722059601903 -0.257519016898193 -0.391428905685253 0.175112931490771 0.432631948388963 0.247218256222265 0.381128145009325 0.751955529342722 0.422331187713036 0.339925102305614
MMP0222 0.293927485741483 0.384366712123477 1.83642535082803 0.206197140287695 0.477221217529152 0.455713530478112 0.437745083068383 -0.134658853046886 -5.0486207779737 -4.8433448787777 0.194444336721288 0.0135658839572992 -0.122092955615693 -0.158268646168491 -0.420542402676275 0.583333010163866 0.230620027274086 0.104005110339294 0.239663949912286 0.393410634761677 0.411498480038076 0.393410634761677 0.302971408379682 -0.529069474334669 0.393410634761677 -0.556201242249267 -0.492893783781871 0.0406976518718976 -0.0497415745100971 -0.393410634761677 0.321059253656081 -0.0497415745100971 -0.330103176294281 -0.185400414083089 -0.0497415745100971 -0.17635649144489 0.122092955615693
MMP0328 0.629062941022276 0.403245475014279 0.629075221191142 1.67706677852729 1.43865881668917 1.06769407747928 1.14926747563015 0.189970803585018 -4.17307297448036 -5.22333045954293 0.295713348343805 0.295713348343805 0.263453710342663 0.338726199011995 -0.0161298190005712 -0.36023262434609 -0.155921583672188 -0.381739049680184 -0.0806490950028558 0.209687647007425 0.123661945671046 -0.155921583672188 -0.23119407234152 -0.155921583672188 -0.0698958823358084 -0.0591426696687609 -0.166674796339236 -0.102155520336951 0.112908733003998 -0.0806490950028558 0.112908733003998 -0.102155520336951 -0.241947285008568 0.0483894570017136 0.18818122167333 -0.00537660633352373 -0.0376362443346661
MMP0329 0.546843190826393 0.456283171963423 0.389876185848272 0.674232325348282 0.684088327475059 0.406337802938641 0.466836883306297 0.0482713531437899 -4.80234953877938 -5.52854815660108 0.240332357751727 0.261230823643181 0.114941562403 0.101009251808697 -0.421452395477666 0.0940430965115453 -0.156738494185909 -0.365723153100454 -0.400553929586212 -0.142806183591606 -0.379655463694757 -0.268196978940333 -0.372689308397606 -0.351790842506151 -0.0313476988371818 -0.261230823643181 -0.135840028294454 -0.0383138541343333 0.0243815435400302 -0.0104492329457273 0.0592123200257877 -0.0801107859172424 0.170670804780212 0.184603115374515 0.358756997803303 0.219433891860272 -0.0661784753229393
MMP0330 0.47111906692554 0.203002524772794 0.549265900019214 0.828526376846216 0.855737555351189 0.804774246456283 0.452873759213463 0.209817985990535 -5.34898755604587 -4.79865301243388 0.195342052139858 0.425156231127926 0.325570086899763 0.149379216342244 -0.425156231127926 -0.210662997405729 -0.59368662905251 -0.256625833203343 -0.639649464850123 -0.218323470038665 -0.180021106873987 -0.448137649026733 -0.271946778469214 -0.379193395330313 0.164700161608116 -0.570705211153703 -0.363872450064441 0.225983942671601 0.233644415304536 0.00383023631646781 0.15703968897518 -0.0651140173799526 0.164700161608116 0.264286305836279 0.379193395330313 0.248965360570407 -0.0957559079116951
MMP0357 0.295295528412027 0.173865591494932 1.06887171402114 0.178531282922012 0.435821973252569 0.454265154998147 0.727672860007271 0.57946278688065 -5.62533854110965 -3.42004911454664 0.00827931388071105 -0.063474739752118 -0.0248379416421331 -0.135228793384947 -0.47744043378767 0.107631080449244 0.113150623036384 0.0358770268164145 -0.179385134082073 -0.173865591494932 -0.466401348613389 -0.129709250797806 0.0137988564678518 -0.874847500061801 -0.0469161119906959 -0.753417563144705 -0.102111537862103 0.0965919952749622 -0.422245007916263 -1.24465685340023 -0.0413965694035552 0.328412783934871 0.24010010254062 0.0358770268164145 -0.00827931388071105 -0.229061017366339 0.0579551971649773
MMP0358 0.242541276106383 0.168724365987049 1.05604568016966 0.215532417408092 0.510279490489993 0.684080271749131 0.703841179858715 0.677096496063832 -5.44196069202032 -4.14623223758964 0.158179093112858 -0.0369084550596669 0.0632716372451433 -0.0790895465564291 -0.474537279338575 -0.0896348194306196 0 0.10018009230481 -0.226723366795097 -0.0790895465564291 -0.374357187033764 -0.0158179093112858 0.0369084550596669 -0.806713374875577 0.152906456675763 -0.643261645325623 -0.347994004848288 -0.237268639669287 -0.590535280954671 -0.964892467988435 0.126543274490287 0.326903459099907 0.0949074558677149 0 -0.0316358186225716 -0.300540276914431 0.131815910927382
MMP0390 -0.00333775292634568 0.317086528002839 2.04059633239998 1.72942099820723 1.91550324719221 1.75212865926047 1.15379184815841 0.751584923675505 -4.48393754827301 -4.02084193305148 -0.110145846569407 -0.030039776337111 -0.0834438231586418 -0.0166887646317284 -0.0567417997478764 0.010013258779037 -0.236980457770543 -0.143523375832864 -0.156874387538247 -0.257006975328617 0.00333775292634568 -0.130172364127481 -0.0433907880424937 -0.210278434359777 0.116821352422099 0.684239349900863 0.357139563118987 0.303735516297456 0.343788551413604 0.250331469475925 0.163549893390938 -0.250331469475925 -0.290384504592073 -0.203602928507086 -0.0367152821898023 0.170225399243629 0.750994408427776
MMP0706 0 -0.0911835781128694 0.636540903886775 0.204468812147869 0.394615469418048 0.382263426929063 0.437286175970804 0.303160421214304 -6.17842000259229 -3.46883017379463 0.132630659073265 0.124341242881186 -0.107762410497027 -0.182367156225739 -0.232103653378213 -0.447628474372268 0.455917890564347 0.281840150530687 -0.0331576647683161 -0.182367156225739 -0.455917890564347 -0.207235404801976 -0.215524820994055 -0.77091570586335 0.198945988609897 -0.0331576647683161 -0.5139438039089 -0.406181393411873 -0.389602561027715 -0.381313144835636 0.17407774003366 -0.207235404801976 0.34815548006732 0.0828941619207903 0.00828941619207901 0 -0.34815548006732
MMP1024 0.977028609893994 0.305696068126342 1.16575548417637 1.54341347367887 0.589254154474542 0.263742915164576 0.683082227889832 0.529528970979615 -5.26796325055239 -4.15050700187896 -0.113886770478441 0.125874851581435 0.245755662611373 0.233767581508379 -0.137862932684429 -0.317684149229336 -0.0659344460664658 -0.0059940405514969 0.113886770478441 0.125874851581435 -0.0779225271694596 0.17382717599341 0.377624554744304 0.317684149229336 0.0659344460664658 -0.809195474452081 -1.02498093430597 -0.881123961070044 -0.281719905920354 -0.209791419302391 -0.0419582838604783 -0.185815257096404 -0.0779225271694596 0.233767581508379 0.17382717599341 0.0059940405514969 -0.209791419302391
MMP1121 0.122197352760737 -0.391031528834359 1.1920528459182 0.578661824759475 0.156553162928889 1.16685507969349 0.175313548170687 0.316568213520695 -4.70514541545113 -4.60876854662476 0.256614440797548 0 -0.256614440797548 -0.439910469938653 -0.879820939877307 0.684305175460127 -0.219955234969327 -0.415470999386506 0.0610986763803684 -0.378811793558285 0.391031528834358 -0.525448616871169 -0.672085440184054 -0.794282792944791 0.293273646625769 -0.256614440797548 0 0.171076293865032 0.171076293865032 -0.244394705521474 0.207735499693253 0.146636823312884 0.56210782269939 0.745403851840496 0.623206499079759 0.525448616871169 -0.134417088036811
MMP1132 -0.0563140250041178 0.0563140250041177 0.912869769323527 0.422038070260541 0.302068577404922 0.077386585877824 0.0919915676167689 -0.861765883258006 -5.75091385701475 -4.48301889279814 0.134287290394435 0.238251644248191 0.25557903655715 0.368207086565385 -0.385534478874345 -0.680100148126653 -0.4894988327281 -0.394198175028824 0.108296201930996 0.134287290394435 -0.0909688096220364 0.645445363508734 0.00433184807723983 -0.0303229365406788 -0.25557903655715 -0.272906428866109 -0.428852959646743 -0.298897517329548 -0.142950986548914 -0.168942075012353 -0.186269467321313 -0.00433184807723983 0.0649777211585974 0.160278378857874 0.0649777211585974 -0.116959898085475 0.134287290394435
MMP1133 -0.23033914729938 -0.186878930827799 0.953511916776425 0.160430833644113 0.0610013422064119 0.142114873093897 -0.0339799960754228 -0.472254766384164 -5.18887619510774 -4.82622017621347 0.0478062381187392 0.239031190593696 0.456332272951601 0.395487969891388 -0.169494844239166 -0.473716359540233 -0.725785615075404 -0.34333571012549 -0.247723233888012 -0.386795926597071 -0.256415277182328 -0.0912664545903202 -0.0130380649414743 0.647557225426558 -0.378103883302755 -0.256415277182328 0.499792489423182 -0.00434602164715811 -0.221647104005063 -0.299875493653909 -0.438948186362969 0.221647104005063 0.708401528486771 0.760553788252668 0.430256143068652 0.169494844239166 0.0999584978846365
MMP1264 0.391200233568498 0.0936676615586544 1.06063993622496 0.857125563222495 0.407967505348514 0.473649407460071 0.751802305589302 0.15933829049165 -4.25594506311133 -5.10135075220401 0.115707111337161 -0.082647936669401 -0.060608486890894 -0.0716282117801475 -0.126726836226415 -0.655673630910581 0.0716282117801475 -0.181825460672682 -0.159786010894175 -0.0165295873338802 -0.104687386447908 -0.0275493122231337 -0.104687386447908 0.0165295873338802 0.236924085118949 -0.0385690371123871 0.203864910451189 0.644653906021327 0.633634181132074 0.33610160912223 0.203864910451189 -0.0495887620016406 0.137746561115668 0.26998325978671 -0.0495887620016406 -0.159786010894175 -0.214884635340443
MMP1344 0.762328664880353 -0.324710470409348 0.272937840105078 0.845400272331366 0.542037536853883 0.782648840900672 0.13992791055277 0.00499307767708259 -5.62511916409326 -3.8794359573715 0.468188663566669 0.532132142113122 0.122893879415823 0.0461617051600797 0.26356953221802 -0.00499307767708268 -0.247978296153604 -0.235189600444313 -0.145668730479279 0.0589504008693703 -0.567695688885869 -0.299133078990766 -0.120091339060698 -0.0177817733863733 0.813483447717515 -0.273555687572185 -0.209612209025732 0.00779561803220793 -0.17124612189786 -0.567695688885869 0.890215621973259 0.301935619345892 0.404245185020216 0.455399967857379 0.404245185020216 0.48097735927596 -0.0817252519328262
MMP1500 0.685179315638064 0.74666976704148 -0.0637608721249346 1.01037527488081 0.971899935199229 0.602880486695382 0.343072814648759 0.311208366103657 -5.23003314239445 -3.92160732482913 -0.210824404811712 -0.0614904514034161 -0.0614904514034161 -0.158118303608784 0 0.26353050601464 0 0.39529575902196 0.237177455413176 0.52706101202928 -0.184471354210248 0.105412202405856 0.377727058620984 -0.729101066640504 0.096627852205368 -0.096627852205368 -0.491923611227328 0.17568700400976 0.237177455413176 0.245961805613664 0.237177455413176 -0.509492311628304 -0.597335813633184 -0.79059151804392 -0.149333953408296 0.281099206415616 0.325020957418056
MMP1521 0.325206032404174 -0.122611985556478 0.299476104403223 0.49217740341615 0.666222427872329 0.644075619781087 0.459920095978905 0.00266073074558905 -5.3856335212704 -4.76696725976178 0.0773067724616703 0.1172905240653 0.237241778876189 0.125287274386026 -0.0826282339528482 -0.0746314836321223 -0.27455024165027 -0.0506412326699445 -0.122611985556478 0.0933002731031221 0.261232029838367 -0.0346477320284927 -0.0426444823492186 -0.0666347333113964 0.557111791705226 -0.35451774485753 -0.874306515704715 -0.554436502875678 -0.306537242933174 -0.338524244216078 0.533121540743048 -0.0746314836321223 0.0693100221409443 0.253235279517641 0.669066296195388 0.868985054213537 0.0133327698958629
[+] Show/hide bicluster #157 motif PSSM #1. bicluster 157 motif PSSM #1 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0.6 0.4 0
2 0.4 0.6 0 0
3 0.6 0.2 0 0.2
4 0 0.2 0.4 0.4
5 0 1 0 0
6 0.4 0 0.4 0.2
7 0 0.2 0.6 0.2
8 0 1 0 0
9 0.6 0.2 0 0.2
10 0.4 0 0 0.6
11 0 0.4 0.2 0.4
12 0.4 0 0 0.6
13 0 1 0 0
14 0.2 0.8 0 0
15 0.2 0.2 0.6 0
16 0 1 0 0
17 0.2 0.2 0 0.6
18 0.4 0 0 0.6
19 0.4 0 0 0.6
20 0 0.6 0.4 0
21 0 0.4 0.4 0.2 [+] Show/hide bicluster #157 motif PSSM #2. bicluster 157 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 1 0 0
4 0.25 0 0.25 0.5
5 0 1 0 0
6 0 1 0 0 |