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[+] Show/hide bicluster #156 rows and columns.
bicluster 156
Methanococcus maripaludis S2
18x41
[+] Show/hide bicluster #156 rows (genes).
bicluster 156 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #156 rows (short gene names).
bicluster 156 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #156 rows (long gene names).
bicluster 156 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #156 rows (NCBI RefSeq gene IDs).
bicluster 156 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #156 gene upstream sequences.
bicluster 156 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #156 columns (arrays; conditions).
bicluster 156 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #156 ratios.
bicluster 156 ratios
Methanococcus maripaludis S2
18x41
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0215 -0.848275721401275 -0.525328111730739 -0.655719595656955 -1.19961584286976 -1.79004658861475 1.56089093513955 3.0916685213781 -0.0990372669656311 0.542551984246501 1.00329057404313 1.06788009597724 1.05926815971936 1.02051444655889 0.120567107610334 0.0990372669656311 -0.559775856762263 -0.529634079859679 -0.383231163475703 -0.0344477450315239 0.490880366699215 0.943007020237966 -0.167932757028679 0.688954900630477 0.843969753272335 1.19705913984545 1.21858898049016 1.56737239893434 1.80420064602606 1.83003645479971 2.02811098873097 -0.17654469328656 -0.568387793020144 -0.693260868759418 -0.874111530174918 -0.912865243335382 -0.839663785143394 -0.701872805017299 -0.934395083980085 -0.809522008240811 -0.882723466432799 0.223910342704905
MMP0283 -0.250923295901837 -0.356880600480806 0.0344425061498108 -1.05790036492859 -1.35038968363091 1.78533821689335 2.75721929503279 -0.356880600480806 0.222352664550891 0.469586375235152 0.370692890961447 0.476650195540416 0.413075812793035 0.0881400787508635 0.250607945771949 -0.766582178186152 -0.724199256354565 -0.575859029944008 -0.406327342617658 0.0245656960034821 0.278863226993008 0.58967132042465 0.999372898129996 0.702692445308883 1.20422368698267 1.64218054590907 2.24966909216183 2.17903088910918 2.19315852971971 1.92473335811966 0.730947726529942 -0.434582623838716 -0.794837459407211 -1.23279431833362 -1.28930488077573 -1.28224106047047 -1.26104959955467 -1.16921993558623 -0.971432967038826 -0.498157006586098 0.116395359971922
MMP0292 0.0347174395529736 -0.38189183508271 0.0933271432667872 -0.548154666851135 -1.04844359434599 1.38611468793806 3.9170310987186 -0.208304637317842 0.402722298814494 0.888766452556125 0.874879476734935 0.805444597628988 0.888766452556125 0.645744375685309 0.729066230612446 -1.01374923494683 -1.06929713823159 -0.687405303148878 -0.444383226278062 -0.0416609274635684 0.243022076870815 -0.187474173586058 0.145813246122489 0.229135101049626 0.49993112956282 0.777670645986609 1.13178852942694 1.07624062614218 0.985975283304451 0.451326714188657 -0.0347174395529737 -1.21511038435408 -1.32620619092359 -1.7080980260063 -1.91640266332414 -1.80530685675463 -1.65255012272154 -1.65255012272154 -1.43035850958251 -0.638800887774715 -0.576309496579362
MMP0293 -0.226083295976291 -0.532165296682653 0.347514449867933 -0.664139368568126 -0.618592954711971 2.11858921067691 4.40009787045935 0.128693568478812 0.685206297035834 1.03998316149094 0.977375479528271 0.914767797565606 0.747813978998499 0.852160115602941 1.15128570720234 -0.747813978998499 -0.733901160784574 -0.566947342217467 -0.413906341864286 -0.0104346136604442 0.420862750971248 -0.27477815972503 -0.0869551138370348 0.226083295976291 0.365211478115546 0.344342250794658 0.831290888282053 0.671293478821909 0.566947342217467 0.246952523297179 -0.163475614013626 -0.810421660961164 -1.01215752506309 -1.33215234398337 -1.54780102629922 -1.52693179897833 -1.35997798041122 -1.2904138893416 -1.10954725256056 -0.462601205613025 -0.553034524003541
MMP0335 -0.193854380613813 -0.0463017996549575 0.0957555332285975 -0.989861932998771 -1.06886208019924 1.18383184201374 2.27357381918798 -0.784064704449234 0.459592763632547 0.485941438803771 0.596605874522912 0.786316335755726 0.781046600721481 0.248803362262753 0.0380139608929598 -0.652321328593113 -0.620702918387644 -0.188584645579568 -0.304518816332954 0.159217866680591 0.301500712605202 -0.00414391938099883 0.622954549694136 0.807395275892705 1.04980308746797 1.21316487352956 1.38179639462539 1.44503321503633 1.56623712082396 1.06034255753646 0.101250781303898 -1.15294615684637 -1.24780138746278 -1.50601840414078 -1.67991966027086 -1.88016959157216 -2.01718270246253 -1.96975508715432 -1.9908340272913 -0.873650200031396 -0.188584645579568
MMP0542 -0.421255494261775 -0.221104287381728 -0.00345560326417883 -1.18401794789357 -1.34375794266139 1.4653588174088 2.25619671515303 -1.02659085165509 0.403758017024274 0.584382276891633 0.716189169227274 0.765006536758993 0.711307432474102 0.130380758846648 0.159671179365679 -0.48471807205301 -0.308975548938822 -0.0941791317992589 -0.0160713437485086 0.599027487151149 0.774770010265337 -0.0502435010207118 1.09208289922151 1.10184637272785 1.10184637272785 0.965157743639041 1.23853500181667 1.13601853000006 1.28247063259521 0.950512533379525 0.00345560326417897 -1.33414026710492 -1.50011931671276 -1.5977540517762 -1.86136783644748 -1.90530346722603 -1.85648609969431 -1.7881417851499 -1.77349657489039 -0.836203118281385 -0.0795339215397432
MMP0559 -0.533999092402012 -0.326332778690118 0.0704900606933596 -0.835513358440952 -0.561903904724307 1.97582105751261 3.72676532206469 0.0444999243668344 0.133499773100503 0.622998941135681 0.763915368297323 0.800998638603018 0.808415292664157 0.111249810917086 0.711998789869349 -0.919665103581243 -0.875165179214409 -0.266999546201006 -0.23733292995645 0.496915822096317 0.78616533048074 -0.252166238078728 0.0964165027948078 0.244749584017589 1.0828314929263 1.60941393126718 2.01732990462982 2.05441317493552 2.04699652087438 1.53524739065578 -0.15574973528392 -0.949331719825799 -1.05316487668175 -1.05316487668175 -1.0828314929263 -1.19408130384339 -0.986414990131495 -1.03833156855947 -0.852915217030991 -0.519165784279734 -0.222499621834172
MMP0628 -0.798180009835015 -0.884394575357264 -0.530347614934977 -1.37018383295993 -1.33133779965765 0.481616725712852 2.40156528734227 -0.0778712204717088 0.300360421819448 0.59793972862205 0.73421436444754 0.700840984245379 0.659124258992678 0.322609341954222 0.172429131044498 -0.567347463436735 -0.634094223841057 -0.378231642291157 -0.36710718222377 0.258643696566747 0.50338181804926 0.116806830707563 0.539536313268268 0.642437568891597 0.940016875694199 1.39333862344022 1.85222260121993 1.90784490155687 1.99127835206227 1.74097800054606 0.197459166196119 -0.645218683908444 -1.01788809616591 -1.42671200364238 -1.65754455004066 -1.69091793024282 -1.57132998451841 -1.52405102923201 -1.35162189818752 -1.1124460067387 -0.0945579105727892
MMP0709 -0.104400884165573 -0.0596576480946129 -0.411063999507867 -1.15522935563353 -1.24064561761934 1.96296939154122 3.92585984109959 -0.41760353666229 0.268459416425758 0.596576480946129 0.768092219218141 0.887407515407367 0.820292661300927 0.343031476544024 -0.0820292661300927 -0.320659858508544 -0.365403094579504 0.156601326248359 0.201344562319319 0.835207073324581 0.753177807194488 -0.290831034461238 0.559290450886996 -0.0596576480946129 0.171515738272012 1.11858090177399 1.21552457992774 1.15586693183313 1.33483987611696 0.872493103383714 -0.119315296189226 -0.842664279336407 -1.38704031819975 -1.70024297069647 -1.97615959313405 -1.84192988492117 -1.68532855867281 -1.07383766570303 -0.753177807194488 -0.559290450886996 0.275916622437585
MMP0852 -0.864521375333206 -0.672405514148049 0.256415054726597 -0.967387799545957 -1.2299908136611 0.338237527313859 3.57868584184468 -0.309519998576086 0.480289652962892 0.935675397994375 1.0281756274539 0.843175168534855 0.935675397994375 0.501635859761243 0.736444134543101 -0.942790800260492 -0.836059766268738 -0.359327814438904 -0.281058389511618 0.750674939075335 0.942790800260492 -0.259712182713268 0.309519998576086 -0.0604809192619938 0.288173791777735 0.658174709615815 1.32702252263081 1.54759999288043 1.88202389938793 1.92471631298463 -0.152981148721514 -0.387789423503372 -0.743559536809218 -1.34836872942916 -1.71125424500112 -1.6614464291383 -1.55471539514655 -1.36971493622751 -1.00682942065554 -1.01394482292166 0.04625011472976
MMP0961 -0.814618483835538 -0.424493179489802 0.88629382007875 -0.252868541056731 -0.218378437601523 1.91537217922859 3.38169603525871 -0.247910146996469 0.368077175654693 0.877293362379654 1.18528702370523 1.1647541129502 1.07030272347702 0.0313374392720581 0.97585133400384 -0.350574700771662 -0.584649883379104 -0.371107611526701 -0.342361536469647 0.622685269017174 0.81158804796353 -0.416280015187786 0.253092875426476 0.741776151396398 0.478954893731902 0.725349822792367 1.19760677015826 1.28384499532942 1.30848448823547 1.07440930562803 -0.346468118620654 -0.794085573080499 -1.25402277399337 -1.72217313920825 -2.02606021838282 -1.97267465041972 -1.77145212502034 -1.41007289573166 -1.15546480236918 -0.342361536469647 -0.22737723624143
MMP0962 -0.836557004416575 -0.500231287628232 0.910141725021847 -0.172273354673583 -0.212578769063987 1.44000736123688 3.09765570019264 -0.104303545079929 0.368255373445464 0.938731905719363 1.3006013478334 1.28357219761627 1.20694102163918 0.0957889699713635 1.04942138213072 -0.227764884154131 -0.525775012953929 -0.359740798336899 -0.457658412085404 0.662008214690979 0.972790206153626 -0.415085536542576 0.142619133068475 0.819527854199444 0.593891613822454 0.717352952896656 1.25802847229057 1.3006013478334 1.38148981136478 1.2282274594106 -0.321425210348353 -0.764183115993767 -1.31337321049625 -1.76038840369595 -1.896621605433 -2.00731108184435 -1.78167484146736 -1.49217928777613 -1.28357219761627 -0.389541811216879 -0.146876420622757
MMP0963 -0.81314927537849 -0.315484145092201 0.980129830109118 -0.221845007163872 -0.271604037441792 1.21387688544295 3.3533145128166 -0.124416282571572 0.444343866327044 0.955339312603145 1.43078724957308 1.35969223096075 1.24416282571572 0.0222171933163522 1.07531215651145 -0.19995473984717 -0.533212639592453 -0.422126673010692 -0.479891375633207 0.630968290184403 0.862027100674465 -0.328814461082013 0.0311040706428931 0.902018048643899 0.719837063449811 0.759828011419245 1.21305875507283 1.27971033502189 1.37746598561384 1.27526689635862 -0.235502249153333 -0.702063308796729 -1.13307685913396 -1.52409946150176 -1.82180985194088 -1.82625329060415 -1.69295013070604 -1.46633475887925 -1.22194563239937 -0.342144777071824 -0.151076914551195
MMP1160 -0.503552240087622 -0.979232584967442 0.156285316166905 -0.393557470531238 -0.359437012299326 0.104880886251194 2.34620341611579 -0.0241556425134283 0.328888363452063 0.66706735864006 1.0981526711874 1.12045018735364 1.12788269274239 0.310307099980195 0.302874594591448 -0.71909489636129 -0.986665090356189 -0.793419950248762 -0.804568708331883 0.302874594591448 0.607607315530082 0.0724669275402851 0.202535771843361 1.03869262807742 1.76336190348027 1.80052443042401 1.85626822083961 1.71876687114779 1.68532059689842 1.29883031668357 0.172805750288372 -0.707946138278169 -1.13159894543676 -1.48464295140225 -1.64444181726031 -1.83397070467337 -1.74849689270278 -1.3657228651823 -1.14274770351988 -0.0241556425134283 -0.48125472392138
MMP1163 -0.535110726798524 -0.805889648792958 0.434473458159807 -0.70243292686456 -0.629362718994987 0.898027721522348 3.07945956238425 -0.096706757855155 0.780101180031583 1.15403397707152 1.16048109426186 1.25074073492667 1.21205803178461 0.361038562659245 0.225649101662028 -0.0128942343806873 -0.754312711270209 -0.72207712531849 -0.406168382991651 0.818783883173645 1.08311568797774 0.0322355859517183 -0.019341351571031 -0.0838125234744676 0.863913703506051 1.3732359615432 1.11535127392945 1.21205803178461 1.39902443030458 1.40547154749492 0.077365406284124 -0.489980906466118 -0.973514695741893 -1.24429361773633 -1.77940434453485 -1.71493317263141 -1.71493317263141 -1.50217830535007 -1.07022145359705 -0.180519281329623 -0.393274148610963
MMP1174 -0.881776228277337 -0.840763380450484 0.364139567247874 -0.850330601261234 -1.10303977843892 1.71318219939334 3.30197061138272 0.184557815220838 0.281963328809614 0.758737684796779 0.92278907610419 0.943295500017617 0.90740925816912 0.676711989143073 0.943295500017617 -1.20987901089216 -1.37393040219957 -0.9689285299094 -0.774117502731849 0.240950480982761 0.497280779900591 -0.389622054355103 0.00512660597835662 0.512660597835661 0.866396410342268 1.06120743751982 1.32779094839436 1.26114507067573 1.44057627991821 1.21500561687052 -0.246077086961117 -0.379368842398389 -0.753611078818422 -1.40469003806971 -1.61488088318233 -1.64051391307412 -1.49696894568013 -1.30215791850258 -1.08171386143325 -0.58955968751101 -0.128165149458915
MMP1720 -0.679963794684555 -0.460915055457316 -0.5184515108005 -0.64566122760014 -0.907911060369791 1.12359786692846 3.2514070180396 -0.296628501036886 0.314882562639156 0.917266595514064 1.16369642714471 1.28234782755946 1.30972891996287 0.232739285428941 0.187104131423267 -1.72044530601394 -1.26409376595719 -0.533931301866395 -0.61607457907661 0.926393626315199 1.18195048874698 -0.0136905462017024 1.00853690352541 1.07242611913336 0.899012533911794 1.09068018073563 1.14544236554244 0.944647687917468 1.11806127313903 0.844250349104984 0.0684527310085122 0.0228175770028374 -0.57956645587207 -1.36449110476968 -1.52877765919011 -1.5013965667867 -1.20020455034925 -0.52480427106526 -0.214485223826672 -0.360517716644831 0.451788024656181
MMP1721 -0.800959301915857 -0.60743893366773 -0.157833255637226 -0.345707032824951 -0.466425242809632 0.92846879744139 3.15965198136599 -0.155891407755435 0.0376289604926913 1.00523080173332 1.08048872271871 1.25250682782815 1.30626248567485 0.166642539324776 0.252651591879498 -1.85457019571121 -1.87607245884989 -0.747203644069155 -0.661194591514432 0.693447986222453 1.30626248567485 -0.112886881478074 0.467674223266306 1.61804530118572 0.747203644069155 0.994479670163983 0.843963828193218 0.510678749543667 0.811710433485197 0.639692328375751 0.0161266973540106 0.231149328740818 -0.725701380930474 -1.46752945921496 -1.63954756432441 -1.51053398549232 -1.06973759114937 -0.327909512864881 -0.0161266973540105 -0.241900460310158 0.231149328740818
[+] Show/hide bicluster #156 motif PSSM #1. bicluster 156 motif PSSM #1 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0.076923 0.153846 0.538462 0.230769
2 0.307692 0.230769 0.461538 0
3 0.076923 0 0.923077 0
4 0 0 1 0
5 0 0 0.923077 0.076923
6 0 0 1 0
7 0.873854 0.010762 0.010762 0.104623 [+] Show/hide bicluster #156 motif PSSM #2. bicluster 156 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0.5 0.5 0
2 0 0 1 0
3 0 0 1 0
4 0 1 0 0
5 0 0 1 0
6 0 0.5 0.5 0
7 0 0 0 1
8 0 0 1 0 |