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[+] Show/hide bicluster #153 rows and columns.
bicluster 153
Methanococcus maripaludis S2
20x41
[+] Show/hide bicluster #153 rows (genes).
bicluster 153 genes
Methanococcus maripaludis S2
20
[+] Show/hide bicluster #153 rows (short gene names).
bicluster 153 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #153 rows (long gene names).
bicluster 153 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #153 rows (NCBI RefSeq gene IDs).
bicluster 153 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #153 gene upstream sequences.
bicluster 153 upstream sequences
Methanococcus maripaludis S2
20
upstream
[+] Show/hide bicluster #153 columns (arrays; conditions).
bicluster 153 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #153 ratios.
bicluster 153 ratios
Methanococcus maripaludis S2
20x41
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_8 -0.158027279898615 -0.389602336772108 -0.139912859480566 -0.699509681633169 0.736175864893548 -0.250531053497804 -0.165735927698547 0.00385432389996622 -0.281365644697534 -0.343034827096993 0.20427916669821 0.0809408018992906 -0.00385432389996622 -0.188861871098345 -0.312200235897264 0.273656996897601 -0.158027279898615 -0.20427916669821 0.0655235062994257 0.420121305096318 0.705341273693818 0.219696462298074 0.566585613295034 0.389286713896588 0.443247248496115 0.474081839695845 0.651380739094291 0.620546147894561 0.612837500094628 -0.0269802672997635 -0.0578148584994933 -0.0963580974991554 -0.0501062106995608 0.00385432389996622 0.211987814498142 0.304491588097331 0.104066745299088 0.119484040898953 -0.273656996897601 -0.350743474896926 -0.00385432389996622
MMP0128 -0.48347986863796 -0.328069495313139 -0.895683068164874 -0.68628460104668 1.55922257635742 0.278000924466827 0.024173993431898 0.36260990147847 -0.132956963875439 -0.036260990147847 0.652697822661246 0.374696898194419 -0.290087921182776 -0.459305875206062 -0.531827855501756 0.229652937603031 0.169217954023286 -0.024173993431898 0.435131881774164 0.531827855501756 1.45043960591388 0.145043960591388 0.386783894910368 0.797741783252634 0.882350760264277 1.34165663547034 1.69217954023286 1.28122165189059 1.70426653694881 0.084608977011643 -0.423044885058215 -0.543914852217705 -0.991133730707819 -1.01530772413972 -0.495566865353909 -0.12086996715949 -0.580175842365552 0.024173993431898 -0.543914852217705 -0.785654786536685 -0.060434983579745
MMP0193 -0.240760868044002 0.112808927109505 0.0398240777804134 -0.0943205452469161 0.992610596321761 0.249208617799931 -0.139387870972843 0.105596871949123 -0.35058161487109 -0.35902936462702 0.249208617799931 -0.240760868044002 -0.130940121216913 0.223865368532142 0.0549103734135442 0.223865368532142 0.35902936462702 0.544879859257477 0.31679061584737 0.33368611535923 1.16156559144036 0.33368611535923 0.0802536226813339 0.468850111454108 0.705387104620145 1.12777459241664 1.38120708509454 1.00105834607769 1.01795384558955 -0.122492371460983 -0.443506862186319 -0.595566357793056 -0.578670858281197 -0.604014107548986 -0.392820363650739 -0.139387870972843 -0.435059112430389 -0.0802536226813338 -0.587118608037127 -0.654700606084566 -0.181626619752492
MMP0207 -0.384329451612135 -0.96748401155733 -1.34955867726797 -1.14130822659413 1.64980447521307 0.290590560975029 -0.00937388906371061 0.253095004720186 -0.224973337529054 -0.215599448465344 0.918641128243639 0.131234446891948 -0.224973337529054 -0.449946675058109 -0.487442231312952 0.112486668764527 0.00937388906371061 0.318712228166161 0.224973337529055 0.674920012587163 0.77803279228798 0.131234446891948 0.299964450038739 0.534311676631504 0.515563898504083 0.693667790714585 0.984258351689613 0.703041679778295 0.93738890637106 0.0187477781274212 -0.328086117229871 -0.374955562548424 -0.609302789141189 -0.534311676631505 -0.140608335955659 0.15935611408308 -0.0749911125096849 0.112486668764527 -0.45932056412182 -0.628050567268611 -0.131234446891948
MMP0307 -0.675379977421493 -0.360370012230604 -0.44968603325711 -0.47394298052618 0.684695563316962 0.0232889647386722 0.0139733788432033 0.144391581379767 -0.0232889647386722 -0.0326045506341411 0.293440955707269 0.954847554285559 -0.423859158243833 -0.00465779294773444 0.00465779294773444 0.321387713393676 0.153707167275236 0.181653924961643 0.163022753170705 0.871007281226339 0.973478726076497 0.703326735107899 0.302756541602738 0.433174744139302 0.554277360780398 1.3926800913726 1.30883981831338 1.0014254837629 1.22499954525416 -0.153707167275236 -0.433174744139302 -0.7033267351079 -0.86169169533087 -0.86169169533087 -0.591539704362273 -0.45180591593024 -0.7033267351079 -0.582224118466804 -0.721957906898837 -0.805798179958057 -0.237547440334456
MMP0426 -0.539656712329654 -0.765749280003628 -0.75337704588682 -1.17328003106754 0.439587917990381 0.175120390093729 0.13938153497256 0.0964949088271568 -0.039312740633286 0.103642679851391 -0.0107216565363507 0.089347137802923 -0.0679038247302214 -0.0536082826817537 -0.0607560537059875 0.203711474190664 0.0750515957544553 -0.110790450875624 0.089347137802923 0.275189184433003 0.675464361790097 0.360962436723809 0.668316590765863 0.725498758959734 0.632577735644694 0.882749721492878 0.925636347638281 0.789828698177839 0.66116881974163 -0.039312740633286 -0.210859245214898 -0.28948472648147 -0.275189184433002 -0.268041413408769 -0.0679038247302214 0.0607560537059876 -0.0893471378029229 -0.0107216565363507 -0.218007016239132 -0.218007016239132 -0.0464605116575199
MMP0499 -0.151989397680764 -0.25349614311818 -0.461216435580815 -0.415829094144045 0.133750669959072 0.0547161831650749 -0.133750669959072 -0.0547161831650749 -0.273580915825374 -0.413411161691677 0.0851140627012276 -0.425570313506138 -0.462047768949521 0.528923103929057 0.401252009877216 0.182387277216916 0.364774554433832 0.33437667489768 0.632275894351976 -0.0364774554433832 0.918015961991812 0.376933706248294 0.370854130341063 0.462047768949521 0.401252009877216 1.18551730190996 1.33750669959072 1.00920960060027 0.942334265620734 -0.079034486793997 -0.170228125402455 -0.291819643547066 -0.383013282155524 -0.22494430856753 -0.261421764010913 -0.212785156753069 -0.218864732660299 -0.419490737598907 -0.303978795361527 -0.273580915825374 -0.0851140627012276
MMP0522 -0.309019412738628 -0.564354987574931 -0.853609694064193 0.149039386261883 0.977169494335661 0.0417593800998146 -0.150333768359332 0.0250556280598888 -0.417593800998146 -0.217148776519036 0.40089004895822 0.567927569357478 -1.08574388259518 -0.618038825477256 -0.484408809157849 -0.183741272439184 -0.267260032638813 0.242204404578925 -0.0417593800998146 1.58685644379295 0.927058238215884 0.292315660698702 0.0250556280598888 0.300667536718665 0.459353181097961 0.918706362195921 0.918706362195921 0.860243230056181 2.14643213713047 0 -0.233852528558962 -0.317371288758591 -0.275611908658776 -0.133630016319407 0.0334075040798517 0.225500652538999 0.116926264279481 0.125278140299444 -0.267260032638813 -0.0250556280598887 -0.116926264279481
MMP0523 -0.346482479475812 -0.297250914407556 -0.999630291478273 -0.0436139182643155 1.21880307486197 0.354635008404654 -0.0529914380374771 0.493228000194979 -0.419855239835395 -0.37094006626234 0.615515934127618 -0.0774490248240049 -0.607363405198776 -0.493228000194979 -0.525838115910349 -0.0203813223221066 -0.0937540826816902 0.0856015537528476 0.110059140539376 1.40631124022535 1.29217583522156 0.2486521323297 0.0611439669663197 0.313872363760441 0.501380529123822 0.957922149139009 1.11282019878702 0.860091801992897 1.14543031450239 0.012228793393264 -0.199736958756644 -0.362787537333497 -0.379092595191182 -0.2486521323297 0.00407626446442132 0.232347074472015 0.0529914380374771 0.21604201661433 -0.362787537333497 -0.297567305902756 -0.0692964958951623
MMP0524 0.0315650104030624 -0.569157293116602 -0.458276088784383 -0.15910880584456 0.118975808442312 0.0607019430828122 0.322934337200561 0.361783580773561 -0.0461334767429373 0.230667383714686 1.08049458687406 -0.308365870860686 -0.361783580773561 -0.502612088725685 -0.274372782734311 -0.400632824346561 -0.0558457876361872 -0.206386606481562 -0.143256585675437 0.0169965440631874 1.30873389286543 0.274372782734311 0.0704142539760622 0.415201290686436 0.463762845152685 0.988227633388183 1.07563843142743 0.920241457135433 0.764844482843434 -0.133544274782187 -0.463762845152685 -0.65315290757106 -0.454050534259435 -0.250092005501186 -0.424913601579686 -0.269516627287686 -0.216098917374812 -0.327790492647186 -0.201530451034937 -0.148112741122062 -0.0169965440631874
MMP0527 -0.234183492297579 -0.636465588693151 -0.704973483416967 -0.89440957830744 0.294230541604651 0.282221131743237 -0.186145852851922 -0.0780611640991931 -0.186145852851922 -0.00600470493070717 -0.0660517542377788 1.19493628121073 0.306239951466065 0.0420329345149501 -0.594465788140009 -0.414324640218794 -0.0420329345149501 -0.282221131743237 0.00600470493070717 0.666522247308495 0.870682214952538 0.582456378278595 0.870682214952538 0.594465788140009 0.582456378278595 0.942738674121024 1.19493628121073 1.14689864176507 1.30302096996345 -0.450352869803037 -0.378296410634551 -0.414324640218794 -0.318249361327479 -0.0300235246535358 0.0420329345149501 0.00600470493070717 0.0420329345149501 0.0420329345149501 -0.294230541604651 -0.390305820495965 -0.294230541604651
MMP0775 -0.47150626377057 0.138090811393556 -0.36798156699926 -0.395168979771328 1.27977262460246 0.170323695319024 -0.379816269614913 -0.0222252924078541 -0.563196257926226 -0.47150626377057 0.216168692396852 -0.388985269030479 -0.774083244484235 -0.462337264355004 -1.00330822987338 0.527914672526083 0.133647697656761 0.372041682461468 0.271182688890246 0.482069675448255 1.48149061174491 0.142816697072327 0.161154695903458 0.463731676617124 0.647111664928436 0.922181647395405 1.22475862810907 0.784646656161921 1.20642062927794 0.0878027005789333 -0.141422284810207 -0.47150626377057 -0.774083244484235 -0.801590242730932 -0.40732326786161 -0.0680702894856823 -0.278957276043692 0.0878027005789333 -0.599872255588488 -0.664055251497448 0.0144507052544083
MMP0871 0.0114943023098706 -0.347557598272739 -1.05152099379333 -1.32885040496136 0.712646743211981 0.18390883695793 0.34482906929612 0.494254999324438 0.310346162366508 0.229886046197413 0.310346162366508 0.17241453464806 -0.402300580845473 -0.379311976225732 -0.482760697014567 -0.149425930028319 0.0114943023098706 0.402300580845473 0.310346162366508 0.229886046197413 0.551726510873791 0.482760697014567 -0.229886046197413 0.229886046197413 0.597703720113274 0.965521394029135 1.11494732405745 0.839084068620558 1.24138464946603 -0.0114943023098707 -0.34482906929612 -0.425289185465214 -0.413794883155344 -0.35632337160599 -0.436783487775085 -0.310346162366508 -0.436783487775085 -0.229886046197413 -0.52873790625405 -0.609198022423145 -0.0574715115493533
MMP0994 -0.146762311061332 0.186344352096117 -0.125688738120651 0.0918200036800955 0.433460779181143 0.0170653850071316 -0.324242315135501 -0.119457695049921 -0.447113087186849 -0.440286933183996 0.0580223090242475 0.433460779181143 -0.542679243226786 0.133110003055627 0.0785007710328054 0.0989792330413634 0.60411462925246 0.713333093298102 0.645071553269575 0.767942325320923 0.726985401303807 0.030717693012837 -0.105805387044216 0.174066927072743 0.276459237115532 0.774768479323776 1.00685771542077 0.686028477286691 1.66899465369747 -0.201371543084153 -0.0921530790385108 -0.344720777144059 -0.344720777144059 -0.426634625178291 -0.29693769912409 -0.180893081075595 -0.310590007129796 -0.221850005092711 -0.460765395192554 -0.549505397229638 -0.249154621104122
MMP1202 -0.23268433906047 0.44049967210586 -0.822644551635395 -1.2471594865477 1.75570910381991 0.571134286784789 0.274990582526009 0.458317637543349 -0.19037809559493 -0.317296825991549 0.655746773715869 0.13396977097421 -0.613440530250329 -0.401909312922629 -0.0775614463534899 0.00705104057758999 -0.11986768981903 -0.317296825991549 0.359603069457089 0.387807231767449 0.980094640285008 -0.16217393328457 0.21858225790529 0.528828043319249 0.557032205629609 1.10701337068163 1.20572793876789 0.839073828733208 0.585236367939969 0.21858225790529 -0.317296825991549 -0.387807231767449 -0.698053017181408 -0.824971747578028 -0.500623881008889 -0.23268433906047 -0.500623881008889 0.13396977097421 -0.345500988301909 -0.303194744836369 0.0916635275086698
MMP1203 -0.0341695585307604 0.13451748791979 -0.835201017868452 -0.284896689926911 1.53763013388422 0.700475949880587 -0.205017351184562 0.102508675592281 -0.512543377961405 -0.580882495022926 0.256271688980703 1.16176499004585 -0.0683391170615207 -0.392949923103744 -0.205017351184562 -0.0683391170615207 0.256271688980703 0.205017351184562 0.0341695585307603 0.768815066942108 1.04217153518819 -0.410034702369124 -0.358780364572984 0.392949923103744 0.700475949880587 1.31552800343427 1.34969756196503 1.21301932784199 1.14468021078047 0.0341695585307603 -0.153763013388422 -0.170847792653802 -0.239186909715322 -0.495458598696025 -0.102508675592281 0.187932571919182 -0.0683391170615207 0.324610806042223 0.222102130449942 0.0854238963269008 -0.119593454857661
MMP1238 -0.225814999176551 0.0571151744000044 -0.341953260368003 0.088742819514168 0.827101756252212 0.110029138330899 -0.0760466675853907 0.0237988868087161 -0.225814999176551 -0.14866161623565 0.282489641375266 0.386873630060014 -0.139584747654368 -0.0851235361666732 -0.212199696304627 0.232566864178212 0.128182875493464 0.200797824143724 0.205336258434365 0.527565093069892 0.554795698813739 0.110029138330899 0.105490704040258 0.237105298468854 0.25979746992206 0.59564160742951 0.591103173138869 0.391412064350655 0.66825655607977 -0.0170470218070549 -0.166815353398215 -0.271199342082963 -0.366506462186429 -0.312045250698734 -0.116892576201162 0.0192604525180749 -0.107815707619879 0.0374141896806398 -0.298429947826811 -0.33473742215194 -0.0488160618415434
MMP1494 -0.277571548907493 -0.393974323752738 -0.894796264654686 -0.0762822708981634 1.16811360165237 0.589839541428423 -0.115654812044789 0 -0.693928872268733 -0.659232428655297 0.266006067703014 0.231309624089578 -0.092523849635831 -0.798018203109043 -0.508881172997071 -0.300702511316451 0.0693928872268734 0.0578274060223945 0.138785774453747 1.94300084235245 0.93680397756279 0.878976571540395 0.115654812044789 0.462619248179155 0.532012135406029 1.16811360165237 1.4225541881509 0.566708579019466 1.71169121826288 0.242875105294057 0 -0.451053766974677 -0.41635732336124 -0.439488285770198 -0.10408933084031 0.0693928872268734 0.0346964436134367 0.508881172997071 0.0115654812044789 -0.462619248179156 0.0809583684313523
MMP1578 -0.337387792783786 -1.15895100705314 -0.587359130310245 -1.59225071110146 0.102000960609052 0.376618931479575 0.0470773664349469 0.243233059913892 0.227540604435577 0.337387792783786 0.298156654087997 0.439388753392837 -0.243233059913892 -0.266771743131366 -0.109847188348209 0.102000960609052 0.00784622773915782 0.125539643826525 0.149078327043998 0.517851030784416 0.737545407480834 0.188309465739787 -0.0706160496524203 0.141232099304841 0.298156654087997 1.02000960609052 1.21616529956946 0.612005763654309 1.27108889374357 -0.149078327043998 0.149078327043998 -0.219694376696419 -0.282464198609681 -0.133385871565683 -0.00784622773915782 -0.0941547328698937 -0.0549235941741047 -0.0549235941741047 -0.102000960609052 -0.400157614697048 -0.0549235941741047
MMP1636 -0.491189522510752 -0.485860495219646 -0.806385088784899 -0.755389893116318 0.7851297092101 0.073485046674837 0.274602016521759 0.467983718297646 0.166308263527263 0.0502792424617306 0.406101573729362 -0.243660944237617 -0.452513182155575 -0.692306492357675 -0.607218543576285 -0.0657497786038015 -0.150837727385192 -0.00386763403551774 0.0966908508879434 -0.0966908508879434 1.20283418504602 0.70004176042871 0.243660944237617 0.537601130936965 0.591748007434214 1.11001096819359 1.34206901032465 1.1332167724067 1.1564225766198 0.058014510532766 -0.251396212308653 -0.321013624947972 -0.537601130936965 -0.607218543576285 -0.37516050144522 -0.189514067740369 -0.382895769516256 -0.243660944237617 -0.607218543576285 -0.653630152002497 0.00386763403551774
[+] Show/hide bicluster #153 motif PSSM #1. bicluster 153 motif PSSM #1 Methanococcus maripaludis S2 13x4
POSITION A C G T
1 0.125 0.875 0 0
2 0.5 0.5 0 0
3 0.25 0.75 0 0
4 0 1 0 0
5 0 0 0.125 0.875
6 0 0 1 0
7 0.125 0.125 0 0.75
8 0 0.5 0 0.5
9 0 0.75 0.125 0.125
10 0.125 0.375 0 0.5
11 0.25 0 0.375 0.375
12 0.25 0.625 0.125 0
13 1 0 0 0 [+] Show/hide bicluster #153 motif PSSM #2. bicluster 153 motif PSSM #2 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0 0 1 0
2 0.4 0.2 0.2 0.2
3 0 0.8 0.2 0
4 0 0 1 0
5 0 1 0 0
6 0 0.6 0 0.4
7 0 0.8 0.2 0
8 1 0 0 0
9 0.6 0.2 0.2 0
10 0.2 0 0.8 0 |