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[+] Show/hide bicluster #152 rows and columns.
bicluster 152
Methanococcus maripaludis S2
20x38
[+] Show/hide bicluster #152 rows (genes).
bicluster 152 genes
Methanococcus maripaludis S2
20
[+] Show/hide bicluster #152 rows (short gene names).
bicluster 152 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #152 rows (long gene names).
bicluster 152 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #152 rows (NCBI RefSeq gene IDs).
bicluster 152 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #152 gene upstream sequences.
bicluster 152 upstream sequences
Methanococcus maripaludis S2
20
upstream
[+] Show/hide bicluster #152 columns (arrays; conditions).
bicluster 152 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #152 ratios.
bicluster 152 ratios
Methanococcus maripaludis S2
20x38
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_minus30m
MMP0071 -0.0580325853459001 -0.515094854642276 -1.54638055443754 -1.28064930745027 0.496501007959368 0.0709287154227669 -0.174097756037701 -0.264370666575767 -0.122513235730234 -0.122513235730234 -0.199890016191434 -0.290162926729501 0.380435837267568 -0.806008129804169 -0.573877788420568 -0.212786146268301 -0.277266796652634 0.0709287154227669 0.0193441951153001 0.186993886114567 0.186993886114567 1.1026191215721 1.54108754418557 1.72163336526171 1.2573726824945 1.03813847118777 0.702839089189236 1.34764559303257 1.34764559303257 1.39923011334004 0.109617105653367 0.1354093658071 -0.0838248454996336 -0.315955186883234 -0.689942959112369 -0.625462308728035 -0.212786146268301 -0.1354093658071
MMP0177 -0.431772409880778 -0.53312802081363 -1.08626829384567 -0.883735372123348 -0.153033259198251 -0.224084415254581 -0.595736616164617 -0.125705891484277 0.153033259198251 0.311531991939295 0.377117674452831 0.415375989252394 -0.0109309470855893 0.56294377490785 -0.289670097768117 -0.191291573997813 0.256877256511349 0.142102312112661 0.437237883423572 0.147567785655456 -0.196757047540607 1.27345533547115 1.74895153369429 1.69429679826634 1.48660880364015 1.62871111575281 1.5303325919825 1.70522774535193 1.80907174266503 1.90745026643533 -0.120240417941483 0.0109309470855893 -0.109309470855893 -0.31699746548209 -0.726907981191689 -1.08216376147334 -1.10402565564452 -0.0491892618851519
MMP0231 -0.0658738840627782 -0.00321321507314983 -0.551351770897897 -0.820806648053939 0.158659188128988 -0.0572379966707872 -0.229955744510607 -0.0917815462387513 0.158659188128988 0.270925724224871 0.0463926520331049 -0.212683969726625 0.150023300736997 -0.41994526713441 -1.14535980806165 -0.817196087165996 -0.523575915838302 -0.0399662218868052 0.288197499008853 -0.532211803230293 0.0809362016010689 0.94452494080017 1.00497615254411 1.0136120399361 1.05679147689605 1.00497615254411 0.892709616448224 1.55767294563153 1.63539593215945 1.73039069347135 0.17593096291297 -0.100417433630742 0.00321321507314983 -0.204048082334634 -0.670386001502149 -0.955370285437852 -0.722201325854095 0.0463926520331049
MMP0269 0.52936142323326 -0.0551579804951089 -1.24288604940134 -0.752330271371266 0.625608954730217 -0.0601547071855977 -0.469206716047662 -0.493268598921902 -0.312804477365108 -0.0962475314969563 -0.397021067424945 -0.397021067424945 0.409052008862065 -0.204526004431032 -0.553423306107499 -0.421082950299184 -0.421082950299184 0.168433180119674 -0.132340355808315 -0.216556945868152 0.0962475314969565 1.19106320227484 1.38355826526875 1.15497037796348 1.09481567077788 1.08278472934076 1.01059908071804 1.27527979233467 1.31137261664603 1.106846612215 0.132340355808315 0.324835418802228 -0.481237657484782 -0.54139236467038 -0.697794603352934 -0.745918369101412 -0.300773535927989 0.252649770179511
MMP0304 -0.566174894240986 -0.39079179242037 -0.764368256778109 -1.05007824896176 0.543221857987973 -0.00765101208433764 -0.0229530362530129 0.328993519626519 0.589127930493999 0.589127930493999 0.489664773397609 0.573825906325324 0.306040483373506 0.229530362530129 -0.619731978831349 -0.436107688807246 -0.206577326277117 0.00765101208433765 0.145369229602415 0.183624290024104 -0.0688591087590388 0.673289063421713 0.420805664638571 1.16295383681932 1.2394639576627 1.06349067972293 1.16295383681932 1.74443075522898 1.64496759813259 1.55315545312054 -0.0382550604216882 -0.13006720543374 -0.374899592132545 -0.596778942578337 -0.856913353445817 -0.956376510542206 -0.74979918426509 -0.0994631570963894
MMP0327 0.117456041893167 -0.63627013790872 -0.780024815782076 -0.791238290407426 -0.466468280661432 0.426197637726632 -0.298673935099766 -0.305385708922233 -0.124167815715633 0.291962161277299 0.0637618513134332 0.0570500774909666 -0.298673935099766 0.573856661820899 -0.755074555027498 -0.627550852400632 -0.278538613632366 -0.291962161277299 0.0234912083786333 -0.352368125679499 0.614127304755699 1.47323435403143 1.46652258020896 1.85580546191203 1.97661739071643 1.8423819142671 1.62760515194816 2.20481770068029 2.05044690276356 1.8021112713323 0.674533269157899 -0.493315375951299 -0.929580674411631 -1.04368082939356 -0.849039388542031 -0.808768745607231 -0.768498102672432 -0.352368125679499
MMP0585 0.185608816422136 0.052440573818527 -0.405093924188078 -0.51819335122581 -0.377205014019179 -0.478990493992609 -0.473003112817701 -0.341280726969734 -0.0299369058745381 0.0299369058745381 0.107772861148337 0.131722385847967 -0.179621435247228 -0.101785479973429 -0.652624548064929 -0.646637166890022 -0.143697148197782 -0.0718485740988914 0.107772861148337 -0.251470009346119 0.395167157543902 1.4968452937269 1.67047934779922 2.27520484646489 1.74232792189811 1.20945099733134 1.09569075500809 1.76627744659774 1.8860250700959 2.09558341121766 0.431091444593348 0.0898107176236142 -0.832245983312158 -1.04180432443392 -1.13161504205754 -1.37111028905384 -1.32321123965458 0.221533103471582
MMP0599 -0.572961066339029 -0.867132480813362 -1.03091203648435 -0.337248630314299 0.124556753551963 0.0249113507103926 -0.0747340521311776 0.0946631326994917 0.254095777246004 0.144485834120277 0.244131236961847 -0.0348758909945496 -0.23416669667769 0.124556753551963 -0.403563881508359 -0.43345750236083 -0.23416669667769 0.0747340521311776 0.13452129383612 0.114592213267806 -0.0548049715628636 0.911755436000367 1.12101078196766 1.19076256395676 0.931684516568681 1.18079802367261 1.17083348338845 1.65909595731214 1.79859952129034 1.70891865873293 -0.0249113507103925 -0.383634800940045 -0.792180952590483 -0.682571009464756 -1.08115262083104 -1.25054980566171 -1.08115262083104 -0.283989398098475
MMP0660 0.0772552328094756 -0.326337406422056 -0.249592129461646 -0.670528306979655 0.0891406532417026 -0.291192800589562 -0.196109437131746 -0.445703266208513 -0.207994857563973 0.124796914538384 0.0653698123772486 0.124796914538384 0.112911494106157 -0.719067936149735 -0.766609617878643 -0.766609617878643 -0.826036720039778 -0.469474107072967 -0.398161584479605 -0.528901209234102 0.136682334970611 1.7174432524568 1.18259933300659 0.707182515717508 1.15882849214213 1.37276605992222 1.46784942338004 1.81252661591462 1.76498493418571 1.88383913850798 0.243651118860654 0.0653698123772486 -0.267421959725108 -0.564557470530783 -0.683411674853054 -0.69529709528528 -0.528901209234102 -0.0415989715127946
MMP0676 -0.448818515298596 -0.51365129235236 -0.645043664477037 -0.66573204931366 0.331003655032714 -0.0953739345009516 -0.286121803502855 -0.196358100443136 0.0897637030597191 -0.0112204628824649 0.0336613886473947 0.0841534716184867 0.235629720531763 -0.746160781683915 -1.20058952842374 -1.09960536248156 -0.77982217033131 -0.54980268124078 -0.409546895209969 -0.465649209622293 0.645176615741731 1.02667235374554 1.29035323148346 1.4530499432792 1.63818758083987 1.8682070699304 1.64940804372234 1.9018684585778 1.8682070699304 1.80088429263562 0.673227772947894 0.869585873391029 0.331003655032714 0.0112204628824649 -0.241239951972995 -0.308562729267785 -0.0897637030597191 0.852755179067332
MMP1029 0.193516900127388 0.0938318890210956 -1.40375408768757 -1.67560790917524 0.352299997667808 0.203440843723664 -0.203440843723664 0.13397323854973 0.451539433630571 0.40191971564919 0.431691546438019 0.540854925997058 0.21336478731994 -0.431691546438019 -0.957660557040662 -0.788953515903965 -0.630170418363544 -0.0645056333757959 -0.0942774641646248 -0.550778869593334 0.0843535205683485 1.4439337932582 1.68210843956883 1.85081548070553 1.97982674745712 2.01952252184222 1.63248872158745 1.75157604474277 1.77142393193532 1.74165210114649 0.0645056333757959 0.74925774151886 -0.739333797922584 -0.838573233885346 -1.0668239365997 -0.868345064674175 -0.521007038804505 0.679790136344926
MMP1065 0.631395047825706 0.237190824484756 -0.914998267322323 -1.18625956664115 0.301971544612294 -0.0137259793005588 -0.0137259793005588 0.0274519586011176 0.0960818551039118 0.219615668808941 0.0549039172022353 -0.466683296219 0.562765151322912 -0.109807834404471 -0.713750923629059 -0.494135254820118 -0.329423503213412 -0.343149482513971 -0.507861234120677 -0.754928861530735 0.535313192721794 1.72947339187041 1.42750184725812 1.12553030264582 1.68829545396874 1.33141999215421 1.18043421984806 1.29024205425253 1.49613174376091 1.37259793005588 0.617669068525147 0 -0.411779379016765 -0.796106799432412 -0.603943089224588 -0.631395047825706 -0.535313192721794 0.205889689508382
MMP1233 -0.421713040204724 -0.180052069367568 -0.800035698875177 -1.05662989746489 0.0421713040204724 0.0105428260051181 -0.295199128143307 -0.137056738066535 0.0843426080409447 -0.0105428260051181 -0.0210856520102362 0.158142390076771 -0.0737997820358266 -0.210856520102362 -0.843426080409447 -0.695826516337794 -0.390084562189369 -0.189770868092126 -0.105428260051181 -0.463884344225196 0.379541736184251 1.4549099887063 1.79228042087008 1.49708129272677 1.54979542275236 1.80282324687519 1.92933715893661 2.70950628331535 2.79384889135629 2.61462084926929 0.569312604276377 0.326827606158661 -0.569312604276377 -0.853968906414565 -1.11753955654252 -0.948854340460628 -0.537684126261023 0.421713040204724
MMP1236 -0.243897128724792 -0.491165240964732 -1.12135659548953 -0.874174741534117 0.650392343266112 0.0580707449344743 -0.0464565959475795 0.116141489868949 0.0929131918951589 0.104527340882054 -0.081299042908264 -0.0348424469606846 0 0.162598085816528 -0.278739575685477 -0.301967873659266 -0.209054681764107 0.232282979737897 0 -0.197440532777213 0.325196171633056 0.871061174017114 0.638778194279217 1.89310628486386 2.11377511561486 1.64920915613907 0.801376280095745 0.882675323004009 1.03365925983364 0.975588514899168 0.418109363528215 0.0464565959475794 -0.638778194279217 -0.476180108462689 -0.650392343266112 -0.78976213110885 -0.464565959475794 -0.0348424469606846
MMP1372 0.132109451113349 -0.207493085560393 -0.742219189795577 -0.943217873821326 0.297246265005036 0.121100330187237 -0.275228023152811 -0.341282748709486 -0.198164176670024 -0.154127692965574 -0.231191539448361 -0.231191539448361 0.220182418522249 0.58348340908396 0.209173297596136 -0.110091209261124 -0.0770638464827871 -0.0440364837044498 0.330273627783373 -0.121100330187237 0.264218902226699 0.979811762424008 1.39815835761628 1.03485736705457 1.02384824612846 1.25503978557682 1.34311275298572 2.00366000855247 2.0366873713308 1.65136813891687 0.187155055743912 -0.0770638464827871 -0.693574618345084 -0.759629343901759 -0.814674948532321 -0.891738795015108 -0.836693190384546 -0.0770638464827871
MMP1477 0.329822419345644 0.020135373033157 -0.124957265549255 -0.612909089021166 0.722199338073391 -0.253440567952358 -0.444326636522613 -0.295859694301303 -0.0413449362076295 0.0222837533157888 0.234379385060517 0.244984166647753 0.276798511409462 -0.0201353730331569 -0.486745762871558 -0.359488383824722 -0.232231004777885 0.10712200601368 -0.0943688441438116 -0.285254912714067 -0.126183188905521 1.17820494632456 0.944899751405355 1.04034278569048 0.987318877754301 1.1039714752139 1.09336669362667 1.09336669362667 1.26304319902245 1.21001929108627 -0.115578407318284 0.0222837533157888 -0.645817486680104 -0.773074865726941 -0.836703555250359 -1.36694263461218 -0.995775279058905 0.0647028796647344
MMP1487 -0.00636922172722537 -0.529921247640773 -1.11432244858575 -1.33193903589457 0.859844933175424 0.210184316998437 -0.222922760452888 -0.146492099726183 0.146492099726183 0.452214742633001 0.413999412269648 0.528645403359705 0.235661203907338 0.159230543180634 -0.490430072996353 -0.605076064086409 -0.477691629541902 -0.133753656271733 0.121015212817282 0.00636922172722537 -0.210184316998437 0.79615271590317 1.02544469808328 1.17830601953669 2.03178173098489 1.75153597498697 1.67510531426027 1.81522819225923 1.63688998389692 1.84070507916813 -0.171968986635085 -0.312091864634043 -0.821629602812071 -0.987229367719931 -1.21652134990004 -1.14009068917334 -0.834368046266522 -0.401260968815198
MMP1549 -0.236616019084624 -0.78429255485758 -0.85244529269527 -1.40398067006019 0.613050594901073 -0.215105471895113 -0.39794512300596 -0.150573830326579 0.0645316415685339 0.0215105471895112 0.150573830326579 0.139818556731824 0.451721490979738 -0.774379698822408 -1.6993332279714 -1.64555685999762 -0.946464076338498 -0.57002950052205 -0.39794512300596 -0.129063283137068 0.161329103921335 1.1400590010441 1.36591974653397 1.11854845385459 1.07552735947557 1.08628263307032 1.12930372744934 1.76386486953993 1.74235432235042 1.86066233189273 0.24737129267938 0.0752869151632896 -0.365679302221693 -0.430210943790227 -0.774379698822408 -0.720603330848629 -0.301147660653159 -0.0537763679737784
MMP1580 0.0298748030055412 -1.10327687290504 -0.699719338812767 -0.913707934300806 1.37587193826572 -0.37873147019844 -0.534963280541139 -0.306624480809502 -0.234517491420564 -0.186446165161272 -0.246535322985387 -0.210481828290918 0.498570234033638 -0.546981112105962 -0.991640880004412 -0.763302080272776 -0.583034606800431 0.00583913987589524 -0.0181965232537507 0.282249265866824 0.366374086820585 1.44797892765465 1.43596109608983 1.61622856956217 2.25317364249779 2.02483484276616 1.61622856956217 2.22913797936815 2.13299532684956 1.91667435868275 0.354356255255762 0.354356255255762 -0.162410502031627 -0.534963280541139 -0.751284248707953 -0.799355574967245 -0.330660143939148 0.210142276477886
MMP1619 0.442478068541476 -0.333854370858167 -0.797054483809964 -0.929088158488515 0.641593199385141 0 -0.46460197196855 -0.309734647979033 0.0221239034270738 -0.0221239034270737 -0.0221239034270737 0.0221239034270738 0.420354165114402 -0.17699122741659 -0.840708330228805 -0.763274668234047 -0.28761074455196 -0.199115130843664 -0.276548792838423 -0.707964909666362 0.630531247671604 1.31637225391089 2.56637279754056 2.2787620529886 1.50442543304102 1.15044297820784 1.03982346107247 1.26106249534321 1.29424835048382 1.2278766402026 0.75221271652051 0.674779054525751 -0.32079659969257 -0.398230261687329 -0.707964909666362 -0.896018088796489 -0.597345392530993 0.719026861379899
[+] Show/hide bicluster #152 motif PSSM #1. bicluster 152 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.1 0 0.1 0.8
2 0 0.4 0.5 0.1
3 0 0.6 0.3 0.1
4 0 0.1 0.4 0.5
5 0 0 1 0
6 0 0 1 0
7 0.8 0.1 0 0.1
8 0 0.1 0.9 0
9 0.2 0.1 0.6 0.1
10 0.5 0 0.5 0
11 0.8 0.2 0 0 [+] Show/hide bicluster #152 motif PSSM #2. bicluster 152 motif PSSM #2 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0.2 0 0.8 0
2 1 0 0 0
3 0.8 0 0.2 0
4 0 0.6 0.2 0.2
5 0.2 0.8 0 0
6 0.8 0 0 0.2
7 0 0.6 0 0.4
8 0.6 0 0.4 0
9 0 0.8 0.2 0
10 0 0 0 1
11 0 0.8 0.2 0
12 0 0.6 0.4 0
13 1 0 0 0
14 1 0 0 0
15 1 0 0 0 |