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[+] Show/hide bicluster #150 rows and columns.
bicluster 150
Methanococcus maripaludis S2
17x41
[+] Show/hide bicluster #150 rows (genes).
bicluster 150 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #150 rows (short gene names).
bicluster 150 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #150 rows (long gene names).
bicluster 150 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #150 rows (NCBI RefSeq gene IDs).
bicluster 150 NCBI RefSeq IDs
Methanococcus maripaludis S2
32
[+] Show/hide bicluster #150 gene upstream sequences.
bicluster 150 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #150 columns (arrays; conditions).
bicluster 150 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #150 ratios.
bicluster 150 ratios
Methanococcus maripaludis S2
17x41
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_10 -0.503138023858437 -0.417637444640663 -1.50662376017254 -1.16242430860941 -1.35249130697441 5.42369406905657 -0.272944156733662 -0.286098091997935 -0.272944156733662 0.0887890630338418 0.31240596252648 -0.00986545144820465 0.4242144122728 0.0164424190803411 -0.0295963543446139 0.167712674619479 0.667562214661848 0.121673901194524 0.674139182293984 0.858294275993804 0.00328848381606822 0.60836950597262 0.358444735951435 0.345290800687163 1.13452691654353 1.0556033049579 1.35814381603617 1.36472078366831 0.0690581601374325 -0.194020545148025 -0.614946473604756 -0.713600988086803 -1.06218027259003 -0.891179114154486 -1.10821904601499 -1.1279499489114 -1.10164207838285 -1.18714265760063 -0.950371822843714 -0.917486984683032 0.0427502896088868
MMP0069 -0.598837420100634 -0.659224386833471 -0.518860971682137 0.271743081390813 -0.219676643578699 4.98264651054994 0.810191803665564 0.0352257305941549 -0.206322136337193 0.186193147426248 0.145935169604356 0.0654192139605735 0.347225058713813 0.26670910307003 0.47806348663496 0.216386630792666 0.699482364655363 0.578708431189689 0.820256298121037 0.920901242675765 -0.135870675148883 1.06180416505239 -0.0251612361386821 0.196257641881721 1.02154618723049 1.33354551535015 0.890707759309347 1.3536745042611 -0.236515619703612 -0.508256970001379 -0.880643264853874 -1.04167517614144 -1.07186865950786 -1.19264259297353 -0.810191803665564 -0.578708431189689 -0.981288209408602 -0.61896640901158 -1.00141719831955 -1.37380349317204 -0.598837420100634
MMP0086 0.411958923699695 0.267773300404801 -0.428856778419686 -0.849567470783161 -1.13138471867019 5.69392534221768 0.195680488757355 -0.0720928116474466 0.308969192774771 0.401659950607202 0.597340439364557 0.278072273497294 0.133886650202401 0.576742493179572 0.669433251012004 -0.0720928116474466 0.0308969192774771 -0.535546600809603 -0.164783569479878 0.257474327312309 -0.56644352008708 0.504649681532126 -0.082391784739939 0.381062004422218 1.45215520604142 1.11228909398918 1.22557779800659 0.494350708439633 -0.494350708439633 -0.463453789162157 -0.720928116474466 -0.617938385549542 -0.772422981936927 -1.12258806708167 -1.2152788249141 -1.46245417913392 -1.26677369037656 -1.11228909398918 -0.504649681532126 -0.514948654624618 -0.102989730924924
MMP0102 -0.336482761747126 -0.274171139201362 -1.6918080958855 -1.36692529071614 -1.45480496716997 4.70999623813978 0.274171139201362 0.124623245091528 0.124623245091528 0.454874844584078 0.39879438429289 0.24301532792848 0.118392082836952 0.0186934867637292 -0.0560804602911877 -0.186934867637292 0.218090678910174 0.249246490183056 0.454874844584078 0.48603065585696 -0.180703705382716 0.834975742113239 0.211859516655598 0.648040874475946 1.50794126560749 1.56402172589868 1.27738826218816 1.41447383178884 -0.168241380873563 -0.149547894109834 -0.579498089675606 -0.791357606331204 -0.959598987204767 -1.17768966611494 -1.04060409651426 -0.928443175931885 -1.15899617935121 -0.953367824950191 -1.09045339455087 -1.15899617935121 -0.218090678910174
MMP0190 -0.785421205176896 -0.640217284892092 -1.60014737314318 -1.05416054853007 -1.00816493631856 5.53473611344956 0.389410513491066 -0.039601069168583 0.0198005345842915 0.640217284892092 0.831622452540243 0.772220848787369 0.316808553348664 0.0594016037528745 0.389410513491066 0.0660017819476383 0.211205702232443 0.112203029310985 0.468612651828232 0.73921995781355 -0.488413186412524 0.501613542802052 0.217805880427207 -0.0198005345842915 0.719419423229258 0.811821917955952 0.745820136008313 1.18803207505749 -0.244206593206262 -0.204605524037679 -0.646817463086856 -0.73921995781355 -0.950425660045992 -1.06922886755174 -0.996626907409339 -0.976826372825048 -1.29363492617371 -1.12203029310985 -1.25403385700513 -1.19463225325225 -0.151804098479568
MMP0528 -0.72500195417449 -0.440297990434736 -0.883438763189458 -1.03112942771409 -0.883339110181127 5.04232518175193 0.28801447494603 0.294635497358583 0.612444573161099 0.857422402425538 1.02294796273935 1.08915818686487 0.546234349035575 -0.0231735784439335 0.0165525560313811 0.188699138757744 0.413813900784526 -0.0231735784439335 0.466782080084946 0.718380931761938 -0.797833200712567 0.188699138757744 0.235046295645611 -0.0761417577443528 0.638928662811308 0.758107066237252 0.897148536900853 0.897148536900853 -0.632307640398756 -0.360845721484107 -0.592581505923442 -0.374087766309212 -0.354224699071554 -0.400571855959421 -0.585960483510889 -0.8905275144883 -1.05605307480211 -1.26130476959124 -1.0295689851519 -0.96997978343893 -0.221804250820506
MMP1019 -0.354840243677989 -0.553133321027453 -0.477096348101482 -1.0122837281697 -1.61690251086179 5.54270133152602 1.16888550858632 0.156547166328524 -0.166983644083759 0.166983644083759 0.260911943880874 0.10436477755235 0.187856599594229 0.198293077349464 0.344403765922754 0.605315709803628 0.584442754293158 0.417459110209398 0.740989920621682 0.459205021230338 -0.386149676943694 0.490514454496043 -0.135674210818055 0.0626188665314098 0.834918220418797 1.06452073103397 1.0749572087892 1.16888550858632 -0.427895587964633 -0.292221377146579 -0.636625143069333 -0.553133321027453 -0.688807531845508 -0.793172309397857 -0.615752187558863 -0.594879232048393 -0.887100609194972 -0.532260365516983 -0.814045264908327 -1.0749572087892 -0.386149676943694
MMP1235 0.0779870509771103 -0.136477339209943 -0.633461597606276 -0.646569271199253 -0.985510398684338 4.53262720500168 0.207965469272294 -0.220963311101812 -0.0259956836590364 0.0519913673180736 0.0454924464033144 0.168971943783739 0.116980576465665 0.331444966652719 0.311948203908441 0.233961152931331 -0.045492446403314 -0.220963311101812 0.0909848928066287 0.181969785613257 -0.344442808482237 0.0259956836590368 0.825362956174417 1.4492593639913 0.695384537879233 0.649892091475919 0.896851086236768 0.539410435925013 -0.331444966652719 -0.142976260124702 -0.708382379708752 -0.688885616964474 -0.669388854220196 -0.532911515010253 -0.441926622203624 -0.285952520249404 -0.422429859459347 -0.376937413056033 -0.246958994760849 -0.220963311101812 -0.07798705097711
MMP1237 -0.749115517982117 -1.04876172517496 -1.19719699782063 -0.971690753442473 0.272515418823561 4.55360433391257 0.879396477631181 -0.0977107197367978 0.136795007631517 0.0586264318420787 0.0846826237718914 -0.227991679385862 0.110738815701704 0.149823103596423 0.280104063245487 -0.0195421439473596 0.0846826237718914 -0.214963583420955 0.436441214824364 0.136795007631517 -0.3061602551753 0.762143613947023 -0.214963583420955 0.436441214824364 0.697003134122491 1.02270553324515 1.08784601306968 1.38749222026253 -0.293132159210394 -0.475525502719083 -1.16601458885912 -1.1269303009644 -1.62199794763084 -1.85650367499916 -1.322351740438 -1.50474508394669 -1.7262227153501 -1.17904268482403 -1.20509887675384 -1.21812697271875 -0.436441214824364
MMP1256 -0.085160079034377 -0.334089540827171 -0.697604823708058 -0.605316164777872 -1.52366719377812 4.91760783266405 1.23809653365363 -0.425800395171885 0.360292642068518 0.373394192689191 0.452003496413231 -0.0327538765516835 0.674729856964679 -0.0589569777930302 0.111363180275724 0.111363180275724 0.150667832137744 -0.216175585241111 0.569917451999292 0.347191091447844 -0.425800395171885 1.25119808427431 -0.163769382758417 0.268581787723804 1.00226862248151 1.51322909668777 1.38221359048104 1.57873684979114 -0.412698844551211 -0.268581787723804 -0.910557768136799 -1.02847172372286 -0.962963970619493 -1.26429963489498 -0.871253116274779 -0.910557768136799 -1.40841669172239 -1.01537017310219 -1.32980738799835 -1.32980738799835 -0.189972483999764
MMP1282 -0.097472746071 -0.292418238213 -0.916294511891724 -1.08178463692033 -1.55438999929817 4.52023207064434 -0.3314073366414 0.2079418582848 0.2209382244276 -0.00649818307140001 0.0454872814998001 0.0909745629996002 -0.2014436752134 -0.1104691122138 0.779781968568001 0.2859200551416 0.0714800137854001 -0.1104691122138 0.1039709291424 0.0909745629996002 -0.4743673642122 0.1884473090706 1.0332111083526 0.4483746319266 0.630323757925801 0.565341927211801 0.656316490211401 0.409385533498201 -0.454872814998 -0.3379055197128 -0.643320124068601 -0.5393491949262 -0.610829208711601 -0.597832842568801 -0.5718401102832 -0.721298320925401 -0.727796503996801 -0.701803771711201 -0.597832842568801 -0.773283785496601 -0.2469309567132
MMP1283 -0.127041107767225 -0.205685603051698 -1.3058963027366 -1.29242013894967 -2.03452001987437 4.25548216359631 -0.393222476422364 0.139140260887913 0.127041107767225 0 0.139140260887913 0.151239414008602 -0.0362974593620644 0.22383433273273 1.08287420430159 -0.0120991531206881 0.0302478828017203 0.55051146699131 0.0544461890430966 -0.19358644993101 -0.435569512344773 0.41742078266374 0.659403845077503 0.471866971706837 0.780395376284384 0.568660196672342 1.04657674493952 1.2220144651895 -0.411371206103396 -0.471866971706837 -0.756197070043008 -0.653354268517159 -0.77434579972404 -0.925585213732642 -0.877188601249889 -1.0163288621378 -1.02237843869815 -0.992130555896427 -0.738048340361976 -0.816692835646449 -0.314577981137891
MMP1294 -0.0239957910392185 -0.0143974746235311 -1.40532752535212 -0.91268804195068 -1.29278612317853 5.00057495211549 1.1086055460119 0.0623890567019682 -0.158372220858842 0.551903193902026 0.417526764082402 0.369535182003965 0.283150334262778 0.0335941074549059 -0.110380638780405 -0.0623890567019681 0.436723396913777 0.359936865588278 0.6478863580589 0.734271205800087 0.12957727161178 0.801459420709898 0.302346967094153 0.12957727161178 1.61731631604333 1.22378534300014 1.24298197583152 1.11820386242758 0.100782322364718 -0.225560435768654 -0.283150334262778 -0.417526764082402 -0.532706561070651 -0.676681307305962 -0.791861104294211 -0.83025436995696 -1.28137524149427 -1.07981059676483 -1.09900722959621 -0.839852686372648 -0.158372220858842
MMP1387 -0.200735685069307 -0.216794539874852 -1.28322913909201 -1.18485322887801 -1.60301127475079 5.19713278525871 0.401471370138614 -0.184676830263762 -0.056205991819406 0.10438255623604 0.17664740286099 0.136500265847129 0.17664740286099 0.859148732096634 0.546001063388515 0.0321177096110891 0.473736216763565 0.361324233124753 0.521912781180198 -0.0321177096110891 -0.0481765644166337 0.706589611443961 0.883237014304951 0.714619038846733 1.17229640080475 1.27667895704079 1.31682609405465 1.25259067483248 -0.0401471370138614 -0.208765112472079 -0.658413047027327 -0.762795603263367 -0.931413578721585 -1.02776670755485 -0.91535472391604 -0.730677893652278 -0.883237014304951 -0.674471901832872 -0.794913312874456 -0.778854458068911 -0.256941676888713
MMP1552 -0.751596676396489 -0.20877685455458 -0.668530597958329 -1.08332803503366 -1.5455757745477 4.04240552957921 0.20877685455458 0.146143798188206 0.020877685455458 0.0417553709109161 0.167021483643664 0.177460326371393 -0.271409910920954 0.501064450930992 1.47187682460979 0.250532225465496 -0.020877685455458 0.386237180925973 0.302726439104141 0.574136350025095 -0.699402462757843 0.490625608203263 0.375798338198244 0.83510741821832 1.25266112732748 1.13783385732246 1.50319335279298 1.38836608278796 -0.688963620030114 -0.323604124559599 -0.897740474584694 -0.824668575490591 -0.897740474584694 -0.876862789129236 -0.595014035480553 -0.511503293658721 -0.803790890035133 -0.584575192752824 -0.762035519124218 -0.866423946401507 -0.125266112732748
MMP1608 -0.595465268551243 -0.830042495556278 -0.369681102737684 -0.132397329702265 -0.0867693163006704 4.72182571134313 0.210518024235288 -0.240592027697472 0.0421036048470576 0.138340415926046 0.33682883877646 0.288710433236966 0.366902842238644 0.589450467858806 0 -0.156384818003357 0.30074003462184 -0.192473622157977 0.0541332062319312 0.324799237391587 -0.0902220103865519 0.372917642931081 0.174429220080667 -0.511258058857127 1.10672332740837 1.13679733087055 1.14281213156299 0.475169254702507 0.0060148006924368 -0.673657677552921 -0.697716880322668 -0.685687278937795 -1.11273812810081 -1.31122655095122 -1.32927095302853 -1.37738935856803 -1.19694533779492 -1.07063452325375 -0.553361663704185 -0.493213656779817 -0.553361663704185
MMP1653 -0.476263736304144 -0.447104732040625 -0.453454921671125 0.0612129436293244 -0.401373693687339 5.31892986244275 0.447104732040625 -0.087477012790557 0.0194393361756793 0.242991702195992 0.233272034108152 0.136075353229755 -0.0194393361756794 0.136075353229755 0.505422740567663 -0.0194393361756794 -0.087477012790557 0.155514689405435 0.0971966808783966 0.233272034108152 -0.57346041718254 0.369347387337907 0.456824400128464 0.933088136432608 1.19551917480428 1.23439784715564 1.21495851097996 0.758134110851494 -0.563740749094701 -0.252711370283831 -0.709535770412296 -0.631778425709578 -1.10804216201372 -1.26355685141916 -1.01084548113533 -0.806732451290692 -0.942807804520448 -0.417945727777106 -0.194393361756793 -0.349908051162228 -0.28187037454735
[+] Show/hide bicluster #150 motif PSSM #1. bicluster 150 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.111111 0 0.888889
2 0.555556 0 0.444444 0
3 0.111111 0.444444 0.444444 0
4 0.111111 0.222222 0.555556 0.111111
5 0 0 1 0
6 0 0 0.666667 0.333333
7 0.222222 0.333333 0.444444 0
8 0.222222 0 0 0.777778
9 0 0 1 0
10 0 0 0.333333 0.666667
11 0 0 0.111111 0.888889 [+] Show/hide bicluster #150 motif PSSM #2. bicluster 150 motif PSSM #2 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0.6 0 0.4
2 0 0.2 0 0.8
3 0 0.2 0 0.8
4 0 1 0 0
5 0.6 0.2 0 0.2
6 0.2 0 0.2 0.6
7 0.6 0 0 0.4
8 0 0 0.4 0.6
9 0 0.4 0 0.6
10 0.2 0.4 0 0.4
11 0.2 0.8 0 0
12 1 0 0 0
13 0.4 0 0.2 0.4
14 1 0 0 0
15 0.6 0.4 0 0
16 0 0 0.4 0.6
17 0 0.6 0.4 0
18 0 0.8 0 0.2
19 0 0.6 0.2 0.2
20 0 0.8 0 0.2
21 0 0 0 1
22 0 0 0 1
23 0 0.6 0 0.4 |