|
[+] Show/hide bicluster #145 rows and columns.
bicluster 145
Methanococcus maripaludis S2
18x39
[+] Show/hide bicluster #145 rows (genes).
bicluster 145 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #145 rows (short gene names).
bicluster 145 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #145 rows (long gene names).
bicluster 145 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #145 rows (NCBI RefSeq gene IDs).
bicluster 145 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #145 gene upstream sequences.
bicluster 145 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #145 columns (arrays; conditions).
bicluster 145 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #145 ratios.
bicluster 145 ratios
Methanococcus maripaludis S2
18x39
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_minus30m
MMP0117 -0.568089168051892 0.102346430673297 -0.541695234945632 -0.643692109840656 -0.597912805774815 -0.302169635158882 -0.341798439769883 -0.371520043228134 -0.104025612103877 0.123840014409378 -0.00495360057637506 -0.00495360057637506 -0.371520043228134 0.460684853602886 0.00495360057637513 -0.272448031700632 -0.351705640922634 -1.25326094582291 -1.12446733083715 -0.807436893949145 -0.104025612103877 -0.381427244380884 -0.0643968074928766 1.37214735965591 1.56038418155816 1.32261135389216 1.35233295735041 1.93685782536267 1.92695062420992 1.60001298616916 2.03592983689017 1.74862100346042 1.30279695158666 0.827251296254645 1.34242575619766 0.559756865130389 0.252633629395131 0.21300482478413 0.549849663977638
MMP0231 -1.16617163171302 -0.218855105769843 -0.00321321507314983 -0.551351770897897 -0.820806648053939 -0.41994526713441 -0.0572379966707872 -0.229955744510607 -0.0917815462387513 0.158659188128988 0.227746287264916 0.270925724224871 -0.212683969726625 0.150023300736997 0.270925724224871 0.236382174656907 -0.41994526713441 -1.14535980806165 -0.817196087165996 -0.523575915838302 -0.0399662218868052 0.288197499008853 -0.532211803230293 0.0809362016010689 0.94452494080017 1.00497615254411 1.0136120399361 1.05679147689605 1.00497615254411 0.892709616448224 1.55767294563153 1.63539593215945 1.73039069347135 1.28996043647981 0.17593096291297 -0.100417433630742 0.00321321507314983 -0.670386001502149 0.0463926520331049
MMP0431 -2.12049931014082 -0.275603364184493 -0.620000837846774 -0.808038306509377 -0.911855938871176 -0.412502709227938 -0.244134256481841 -0.367604455162312 -0.00841842263730487 0.32831848285489 0.457400963293564 0.446176399777158 0.451788681535361 0.165562311866996 0.614544852523255 0.221685129449028 0.0533166767029308 -0.990567730322872 -0.979343166806465 -0.524748344392003 -0.367604455162312 -0.0813780854939469 -0.283420228789263 0.395665863953328 1.18138531010178 1.2206712824092 1.37220288988069 1.50689765207757 1.70893979537289 2.11302408196352 2.54516977734517 2.55078205910337 2.11863636372172 1.53495906086859 0.440564118018954 0.204848284174418 -0.50229921735919 -0.698729078896303 0.137500903075979
MMP0432 -1.59141078719981 -0.677194358005071 -0.987634459509265 -1.41968007191313 -1.33831312482697 -0.617442101468488 -0.31528958372859 -0.361269314689009 -0.10509652790953 0.170781857852986 0.236467187796442 0.275878385762516 0.275878385762516 -0.197055989830369 0.0919594619208385 0.499208507570267 -0.545188238530686 -1.38596046180693 -1.28743246689174 -0.85390928926493 -0.617442101468488 -0.177350390847332 -0.518914106553304 0.492639974575921 1.51076258869949 1.21517860395394 1.20204153796525 1.16919887299352 1.39909752779562 1.83262070542243 2.13477322316233 1.9442857663263 2.0296766952528 1.75379830949028 0.571462370508069 0.564893837513723 0.0197055989830368 -0.282446918756862 0.604305035479797
MMP0433 -1.60488503034043 -0.517277768252215 -0.678133777646606 -1.06670967501375 -1.0508379442962 -0.373934290807379 -0.149573716322951 -0.201924517035984 0 0.30662611846205 0.538465378762625 0.486114578049592 0.21688188866828 0.0822655439776233 -0.224360574484427 -0.112180287242214 -0.329062175910493 -1.51069453486181 -1.32372738945812 -1.09936681497369 -0.478635892233445 -0.194445831219837 -0.568380122027216 0.702996466717872 1.12180287242214 1.0694520717091 1.56304533557484 2.3109139171896 2.05663859944058 1.60791745047173 1.87715013985304 1.77244853842697 2.0117664845437 1.80236328169157 0.762825953247052 0.702996466717872 0.052350800713033 -0.134616344690656 0.792740696511643
MMP0548 -1.02218887424791 -0.346511906955682 -0.815124207705727 -1.0440701710112 -0.911901244677243 -0.614677974045963 -0.156108691821197 -0.439055695747117 -0.165865485060022 0.351244556597693 0.156108691821197 0.321974176881219 0.370758143075343 -0.156108691821197 0.575650801090664 -0.478082868702416 -0.614677974045963 -1.336680673719 -1.20984236161428 -0.79030025234481 -0.819570632061284 -0.165865485060022 -0.731759492911861 0 1.58060050468962 0.965922530643656 1.1025176359872 1.83427712889906 2.22454885845206 2.12698092606381 2.4391983097062 2.41968472322855 2.26357603140736 1.72695240327199 0.185379071537671 0.24391983097062 0.185379071537671 -0.595164387568313 0.253676624209445
MMP0549 -1.31449577553489 -0.694566457425637 -0.901977218389635 -1.29722353966435 -1.66224345772847 -0.621585518378693 -0.153005666062448 -0.497268414702955 -0.0956285412890298 0.25819706148038 0.172131374320253 0.191257082578059 0.200819936706962 0.0286885623867089 0.506831268831857 -0.468579852316246 -0.478142706445149 -1.58743378539789 -1.40573955694874 -0.87021972573017 -0.736339767925529 -0.468579852316246 -0.918033996374685 0.124317103675739 0.898908288116879 1.11885393308165 1.37705099456203 2.07513934597194 2.28552213680781 1.96994795055401 2.18033074138988 1.99863651294072 1.85519370100718 1.2909853074019 0.200819936706962 0.200819936706962 0.229508499093671 -0.325137040382701 0.0478142706445148
MMP0642 -0.66314562591757 -0.386115089979877 -0.433780635116253 -0.587777026285195 -1.02518652438 -0.442093150218241 -0.099245401069401 0.279691584831948 0.234580038891312 0.288713894020076 0.279691584831948 0.252624657267566 0.550360860475769 0.315780821584458 -0.911253228000864 -0.117290019445656 -1.10072172095154 -0.378936985901349 -0.324803130772585 -0.13533463782191 -0.279691584831948 -0.0721784735050189 -0.189468492950675 1.38943561497161 1.3533463782191 1.17290019445656 1.56988179873416 1.96686340301177 1.78641721924922 1.78641721924922 1.74130567330858 1.47063639766476 1.29019021390221 1.56085948954603 1.42552485172412 0.460137768594496 0.0902230918812737 -0.13533463782191 0.784940899367081
MMP0676 -0.927672363967406 -0.0819817566378171 -0.51365129235236 -0.645043664477037 -0.66573204931366 -0.162696711795741 -0.0953739345009516 -0.286121803502855 -0.196358100443136 0.0897637030597191 0.157086480354509 -0.0112204628824649 0.0841534716184867 0.235629720531763 -0.381495738003806 -0.875196104832262 -0.746160781683915 -1.20058952842374 -1.09960536248156 -0.77982217033131 -0.54980268124078 -0.409546895209969 -0.465649209622293 0.645176615741731 1.02667235374554 1.29035323148346 1.4530499432792 1.63818758083987 1.8682070699304 1.64940804372234 1.9018684585778 1.8682070699304 1.80088429263562 1.40816809174934 0.673227772947894 0.869585873391029 0.331003655032714 0.173917174678206 0.852755179067332
MMP0677 -0.451122181273264 -0.0923511606823303 -0.301878368256592 -0.631047310232648 -0.639064539857511 -0.297056591754226 -0.220231611128133 -0.368759907005245 -0.363638241630173 -0.0307299922504371 0.102433307501457 0.0614599845008743 0.220231611128133 0.0409733230005829 -0.21510994575306 -0.491679876006994 -0.542896529757723 -1.04994140188994 -0.962873090513697 -0.64532983725918 -0.266326599503788 -0.128041634376821 -0.338029914754808 0.624843175758888 1.36236298976938 1.25480801689285 1.30602467064358 1.77721788515028 2.17670778440596 2.21768110740655 2.23304610353176 2.23304610353176 2.14085612678045 1.86940786190159 0.619721510383816 0.942386429013405 0.235596607253351 0.0204866615002914 0.973116421263842
MMP0755 -1.71792065108762 0.447360715312247 -0.206776344586001 -0.766378212663239 -1.03347557998676 -0.201362036463595 -0.132813258093009 0.021421493240808 0.124244660796686 0.124244660796686 0.381302579686381 0.415576968871674 0.235636425648887 0.655497693168723 -0.235636425648887 -0.569811720205491 -0.946830001243711 -1.06679036339224 -0.989672987725327 -0.878281222873126 -0.29561660672315 -0.0985388689077166 0.0899702716113933 0.989672987725327 1.33241687957825 1.5723376038753 2.06074764976572 1.67516077143118 1.53806321469001 1.43524004713413 1.78655253628338 1.70943516061647 1.39239706065252 1.50378882550472 1.06679036339224 0.484125747242259 -0.381302579686381 -0.775458055317247 0.595517512094461
MMP1145 -1.27172646566448 -0.451554903385361 -0.872208674375698 -1.24693538553677 -1.60259202450292 -0.0497200454440088 0.340934418982432 -0.472049196175297 -0.450932738638732 -0.0919529605171376 0.0664204710070954 0.235352131299611 0.552098994348076 0.172002758689917 0.0980951573119419 -0.0180453591391622 -0.366466908492475 -0.831028974296891 -0.883820118138302 -0.292559307114499 -0.472049196175297 -0.260884620809653 -0.472049196175297 0.657681282030898 2.11471685205384 1.69238770132255 1.39675729581065 1.61848009994458 1.61848009994458 1.9035522766882 2.00913456437102 2.16750799589525 2.1991826822001 1.7240623876274 0.668239510799181 0.509866079274948 -0.260884620809653 -0.619864398931247 0.731588883408874
MMP1233 -0.94650227815019 -0.427283827294524 -0.180052069367568 -0.800035698875177 -1.05662989746489 0.22139934610748 0.0105428260051181 -0.295199128143307 -0.137056738066535 0.0843426080409447 0.569312604276377 -0.0105428260051181 0.158142390076771 -0.0737997820358266 0.737997820358266 0.643112386312204 -0.210856520102362 -0.843426080409447 -0.695826516337794 -0.390084562189369 -0.189770868092126 -0.105428260051181 -0.463884344225196 0.379541736184251 1.4549099887063 1.79228042087008 1.49708129272677 1.54979542275236 1.80282324687519 1.92933715893661 2.70950628331535 2.79384889135629 2.61462084926929 2.20345063506968 0.569312604276377 0.326827606158661 -0.569312604276377 -0.295199128143307 0.421713040204724
MMP1250 -0.982543517665735 -0.344735213563426 -1.14284568227259 -1.25683832190187 -1.86663423292149 0.209777555633651 -0.0806836752437122 -0.199019732267823 -0.0699258518778839 0.188261908901995 0.199019732267823 0.317355789291934 0.295840142560278 -0.424934022950217 -0.00537891168291414 0.263566672462793 -0.134472792072853 -1.33934900904562 -0.973583014607459 -0.693879607095924 -0.371144906121076 -0.295840142560278 0.252808849096965 0.424934022950217 1.5222320062647 1.36086465577728 1.28555989221648 0.607817020169298 0.84448913421752 1.32859118567979 1.58677894645967 1.72663065021544 1.90951364743452 2.06012317455612 0.46796531641353 0.371144906121076 -0.704637430461752 -0.489480963145187 0.586301373437641
MMP1251 -0.627616449710102 0.255409024697046 0.0802615945219354 -0.122444794702503 -0.0724514764270702 -0.906031261307792 -0.38019265871162 -0.429371808594716 -0.202391116826584 -0.0472876441183607 -0.039721621059423 0.1153818516488 0.319664474240119 0.285617370474899 -0.156994978472958 -0.270485324357023 0.0889007709425183 -0.505032039184093 -0.637437442715503 -0.164561001531895 -0.0624196902362361 0.141862932355082 -0.232655209062335 0.784974892364788 1.37512469096193 1.34486059872618 1.59075634814166 1.80260499379191 2.06363278932526 2.29817950415233 2.1922551813272 1.99553858179482 1.85178414367501 1.23515326437158 0.849286088365759 0.516381073772499 -1.35999264484406 -1.39782276013874 0.588258292832408
MMP1252 -0.747733888487861 0.208538352931115 0.00845220087201881 -0.178535116697345 -0.0939360835728961 -0.817063692334408 -0.345826958150842 -0.425633179262575 -0.235618367091783 -0.049403851164406 -0.00380029624341586 0.0380029624341586 0.190014812170793 0.076005924868317 -0.0722056286249012 -0.456035549209902 0.0646050361380695 -0.699254508788517 -0.763859544926586 -0.349627254394258 -0.269821033282526 0.00380029624341586 -0.26602073703911 0.752458656196339 1.13248828053792 1.23509627911015 1.59612442223466 1.99895582403674 2.1813700437207 2.31818070848367 2.24217478361535 1.93435078789867 1.77853864191862 1.13628857678134 0.817063692334408 0.471236734183566 -1.29590101900481 -1.35290546265604 0.516840289104556
MMP1548 -1.0206059956516 -0.960848231569606 -0.986259787831574 -1.28342410231176 -1.08860220437638 -0.273675331275004 0.165747031617256 -0.304511988320075 -0.181165360139791 -0.0732370604820432 0.242838674229933 0.188874524401059 0.242838674229933 0.0424004034369725 0.242838674229933 -0.196583688662327 -0.474113602067964 -0.767061843996138 -0.751643515473602 -0.281384495536272 -0.104073717527114 -0.235129509968665 -0.474113602067964 0.381603630932752 1.49943244881657 1.16022922132079 1.4685957917715 1.59194241995178 1.67674322682573 1.48401412029404 1.85405400483489 1.93114564744756 1.77696236222221 1.79238069074474 0.466404437806697 0.227420345707398 -0.080946224743311 0.258257002752468 0.165747031617256
MMP1580 -1.36429593026054 -0.193056561395672 -1.10327687290504 -0.699719338812767 -0.913707934300806 0.294267097431647 -0.37873147019844 -0.534963280541139 -0.306624480809502 -0.234517491420564 0.0899639608296561 -0.186446165161272 -0.210481828290918 0.498570234033638 0.0539104661351872 0.654802044376336 -0.546981112105962 -0.991640880004412 -0.763302080272776 -0.583034606800431 0.00583913987589524 -0.0181965232537507 0.282249265866824 0.366374086820585 1.44797892765465 1.43596109608983 1.61622856956217 2.25317364249779 2.02483484276616 1.61622856956217 2.22913797936815 2.13299532684956 1.91667435868275 1.96474568494204 0.354356255255762 0.354356255255762 -0.162410502031627 0.113999623959302 0.210142276477886
[+] Show/hide bicluster #145 motif PSSM #1. bicluster 145 motif PSSM #1 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0 0.111111 0.888889
2 0.444444 0.111111 0.444444 0
3 0.333333 0 0.111111 0.555556
4 0.444444 0 0 0.555556
5 0 0.111111 0 0.888889
6 0 0.222222 0.333333 0.444444
7 1 0 0 0
8 0.111111 0 0.111111 0.777778
9 0.333333 0 0 0.666667
10 0.666667 0.111111 0 0.222222
11 0 0.111111 0.666667 0.222222
12 0.444444 0.111111 0.333333 0.111111
13 0 0.111111 0.333333 0.555556
14 1 0 0 0
15 0.222222 0.111111 0.222222 0.444444
16 1 0 0 0
17 0.444444 0 0.111111 0.444444
18 0.666667 0.222222 0 0.111111
19 0.333333 0 0.222222 0.444444
20 0.444444 0 0.222222 0.333333
21 0 0 1 0
22 0 0 1 0
23 0.222222 0.111111 0.444444 0.222222
24 0 0.111111 0.888889 0 [+] Show/hide bicluster #145 motif PSSM #2. bicluster 145 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 0.833333 0.166667
2 0 0 1 0
3 0 0 1 0
4 0.333333 0.666667 0 0
5 0 0 1 0
6 0.333333 0 0.666667 0 |