|
[+] Show/hide bicluster #144 rows and columns.
bicluster 144
Methanococcus maripaludis S2
19x41
[+] Show/hide bicluster #144 rows (genes).
bicluster 144 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #144 rows (short gene names).
bicluster 144 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #144 rows (long gene names).
bicluster 144 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #144 rows (NCBI RefSeq gene IDs).
bicluster 144 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #144 gene upstream sequences.
bicluster 144 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #144 columns (arrays; conditions).
bicluster 144 arrays
Methanococcus maripaludis S2
41
[+] Show/hide bicluster #144 ratios.
bicluster 144 ratios
Methanococcus maripaludis S2
19x41
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0001 -0.853265173608437 0.249025311726534 0.0040964261724714 -0.305645251984695 -0.489931124833968 -0.609404211102612 5.54454741150472 -0.0522762132610369 0.0380608875300233 -0.124545893893885 0.230780035884285 0.176577775409649 0.110330568162871 0.0862406746185888 0.423499184238547 0.242824982656426 -0.226927941457086 -0.841220226836296 -0.401579669653136 -0.154658260824238 0.0501058343021647 0.423499184238547 0.423499184238547 0.622240805978879 0.483723918099253 0.857117268035635 0.646330699523162 0.712577906769939 0.327139610061416 -0.220905468071016 0.044083360916094 -0.389534722880995 -0.389534722880995 -0.666568498640246 -0.931557327627356 -0.79304043974773 -0.576231397849186 -0.43771450996956 -0.118523420507814 -0.281130201931723 0.0320384141439527
MMP0193 -0.240760868044002 -0.48709092356235 0.112808927109505 0.0398240777804134 -0.653023372952524 -0.0943205452469161 6.17538308655374 0.992610596321761 0.249208617799931 -0.0380148739016845 -0.223865368532142 -0.35058161487109 -0.35902936462702 0.249208617799931 0.468850111454108 -0.240760868044002 0.35902936462702 0.544879859257477 0.31679061584737 0.392820363650739 0.33368611535923 1.16156559144036 0.33368611535923 0.0802536226813339 0.468850111454108 1.12777459241664 1.38120708509454 1.00105834607769 1.01795384558955 0.0380148739016845 -0.122492371460983 -0.443506862186319 -0.595566357793056 -0.578670858281197 -0.604014107548986 -0.392820363650739 -0.435059112430389 -0.0802536226813338 -0.587118608037127 -0.654700606084566 -0.181626619752492
MMP0206 -0.309359365902046 -0.672790009344806 -0.239137042912381 -0.190992425407865 -0.177111307224704 -0.903146184341484 5.11405236475407 2.55075552639989 0.834686591018729 -0.309359365902046 -0.332707242573899 -0.321033304237973 -0.461120564269088 1.64018833619764 0.928078097706139 0.846360529354655 0.0875545375194471 0.215967859214636 0.671251454315761 0.321033304237973 1.36001381613541 1.46507926115875 0.180946044206857 -0.0758805991835208 0.344381180909825 1.07983929607318 1.32499200112763 0.963099912713917 1.58181864451801 0.89305628269836 -0.0875545375194471 -0.496142379276867 -0.39107693425353 -0.694599330987613 -0.601207824300203 -0.122576352527226 -0.286011489230194 0.0875545375194471 -0.647903577643908 -0.974773851049844 -0.169272105870931
MMP0499 -0.151989397680764 -0.464876705051522 -0.25349614311818 -0.461216435580815 -0.241600267338381 -0.415829094144045 6.89061770645538 0.133750669959072 0.0547161831650749 -0.0972732145156887 -0.182387277216916 -0.273580915825374 -0.413411161691677 0.0851140627012276 0.133750669959072 -0.425570313506138 0.364774554433832 0.33437667489768 0.632275894351976 0.571480135279671 -0.0364774554433832 0.918015961991812 0.376933706248294 0.370854130341063 0.462047768949521 1.18551730190996 1.33750669959072 1.00920960060027 0.942334265620734 0.486366072578443 -0.079034486793997 -0.170228125402455 -0.291819643547066 -0.383013282155524 -0.22494430856753 -0.261421764010913 -0.218864732660299 -0.419490737598907 -0.303978795361527 -0.273580915825374 -0.0851140627012276
MMP0504 -0.452000477254621 -0.523190298171956 0.200083949413028 -0.537987443445846 -0.338566149332497 -0.237282243989664 5.81083819930101 1.84755195077826 0.717550757641711 -0.0395500417597794 -0.118650125279338 -0.395500417597794 -0.135600143176386 1.3447014198325 0.491550519014401 0.310750328112552 0 0.242950256524359 0.683650721847615 0.231650244592993 0.502850530945766 0.994401049960167 0.0904000954509243 -0.158200167039117 -0.00565000596568277 0.519800548842815 0.683650721847615 0.423750447426207 0.768400811332856 0.497200524980083 0.1638501730048 -0.146900155107752 -0.20340021476458 -0.259900274421407 -0.0904000954509243 0 -0.0621500656225104 0.0734500775538759 -0.378550399700745 -0.525450554808497 0
MMP0505 -0.186801872194055 0.0197153943228967 -0.111982439359958 0.00890204775837925 -0.00422398238373598 0.0549681609902918 5.35250884178787 1.75667856133651 0.336442859910329 -0.166038192348643 -0.215871023977632 -0.224176495915797 -0.141121776534148 1.67777657792395 -0.0954416808742419 0.0291403981982304 0.00422398238373597 0.0374458701363953 0.0582095499818073 0.0582095499818073 0.568996074178944 0.926131367520031 0.174486157116115 0.0457513420745601 0.145417005332538 0.465177674951884 0.560690602240779 0.448566731075554 0.535774186426285 0.834771176200218 -0.0165396974616761 -0.0954416808742419 -0.19510734413222 -0.240787439792126 -0.215871023977632 -0.0539143211834178 -0.0248451693998409 0.0872787017653842 -0.19510734413222 -0.220023759946714 -0.0580670571525002
MMP0506 -0.16064152771423 -0.11610629960777 -0.265805592301598 -0.202449714558766 -0.120241249781343 -0.406464058972364 4.89622698364229 1.66461872921267 0.100109937561042 -0.132703870720451 -0.1559852515486 -0.239798222529938 -0.0861411090641524 1.49699278725 0.0768285567328926 -0.426049269155132 0.123391318389191 0.1559852515486 0.17926663237675 0.221173117867418 0.132703870720451 0.877708057221228 0.449330649983281 0.109422489892302 0.304986088848756 0.924270818877527 0.924270818877527 0.947552199705676 0.770613705411741 0.724050943755443 0.0721722805672628 -0.114078766057932 -0.239798222529938 -0.365517679001944 -0.346892574339424 -0.17461035621112 -0.0907973852297822 0.0162969665797045 -0.123391318389191 -0.188579184708009 -0.0162969665797045
MMP0507 -0.107780271113856 -0.0551467269934496 -0.112666236655471 -0.0454837313046749 -0.180906734234965 -0.0795863463048479 4.78939962026609 1.92832963318921 0.485011220012353 -0.0515470861848878 -0.110123320485897 -0.140582962322421 -0.100751122997735 1.90724218884085 0.0304596418365246 0.0281165924644843 -0.00234304937204035 0.103094172369776 0.103094172369776 0.0890358761375335 0.135896863578341 0.759147996541075 0.19681614725139 0.0562331849289685 0.124181616718139 0.318654714597488 0.39597534387482 0.236647986576076 0.407690590735022 1.02156952620959 0.0164013456042825 -0.0562331849289685 -0.145269061066502 -0.19915919662343 -0.178071752275067 -0.0890358761375335 -0.0820067280214124 -0.0187443949763228 -0.185100900391188 -0.217903591599753 -0.0304596418365246
MMP0631 0.070944386760544 -0.759453932019138 -0.364238709782221 -0.700571315305304 -0.864039214569592 -0.658407704121287 5.54916219423703 0.139861791042215 0.743902569746276 -0.330398144056248 -0.131753861126725 -0.160131615830942 -0.204725230366141 -0.143915755999961 0.070944386760544 -0.443909162873118 -0.00202698247887269 -0.0222968072675995 0.0547285269295625 0.0790523166760347 -0.212833160281632 0.261480739774576 0.334452109013993 0.180401440619669 0.257426774816831 0.788496184281475 0.934438922760308 0.824981868901183 0.881737378309618 0.070944386760544 -0.152023685915451 0.674985165464604 0.281750564563303 0.0506745619718172 -0.111484036337998 0.00202698247887269 0.180401440619669 0.212833160281632 -0.180401440619669 -0.504718637239299 -0.0344587021408357
MMP0674 0.10263466298201 -0.502977792758741 0.0811058499044965 -0.127075094376835 -0.0532186728343009 -0.367182016788191 5.91385045218535 1.9696080562738 -0.190607231252304 -0.278579799522598 -0.434975476447565 -0.503398585102238 -0.229706150483545 0.12218412259763 0.0342115543273366 0.171057771636683 0.845514128375603 0.601145883180342 1.031233994724 0.816189938952172 0.679343721642826 1.10943183318648 0.141733582213251 0.317678718753839 0.268805069714787 1.08988237357086 1.5004210254989 1.25605278030364 1.74478927069416 0.0537610139429573 -0.10263466298201 -0.33722817836946 -0.278579799522598 -0.610920612988153 -0.581596423564721 -0.219931420675735 -0.425200746639754 -0.33722817836946 -0.933486696645897 -0.894387777414655 -0.151508312021062
MMP0675 0.282148273157834 -1.30865933307577 0.0375740504085848 -0.492314151844951 -0.233302170973364 -0.00673815544915858 6.07403994355746 0.984918918345488 -0.116721552489213 -0.411125471419176 -0.496597576914972 -0.458609974472396 -0.487100676304328 0.120700962776886 -0.259175061648873 0.0162350560598026 0.975422017734844 0.576552192087797 0.538564589645221 0.700011900026169 0.244160670715258 1.04190032200935 0.234663770104614 0.0352288572810905 0.234663770104614 1.14636622872644 1.22234143361159 0.9659251171242 1.40278254521382 0.0542226585023785 -0.183199856763721 -0.439616173251108 -0.696032489738496 -0.70552939034914 -0.6105603842427 -0.344647167144668 -0.620057284853344 -0.458609974472396 -0.999933309279103 -1.06641161355361 -0.230684359816941
MMP0685 -0.175680276543766 0.306690294854828 -0.00204351220087432 -0.111056673432279 0.320316940008754 -0.144056139407448 4.56616607787105 0.587855007955187 0.184272071862883 -0.0120655727225618 -0.0556961604082163 -0.132049688858112 0.0315650149630927 0.233356483009245 0.020657368041679 0.107918543412988 -0.0284270431046823 0.206087365705711 0.0315650149630927 0.0861032495701608 0.402425010291156 0.42969412759469 0.0479264853452131 0.020657368041679 0.0915570730308676 0.396971186830449 0.636939419101549 0.249717953391365 0.418786480673276 0.0261111915023859 -0.00115792580114822 -0.137503512318818 -0.18658792346518 -0.230218511150834 -0.197495570386593 -0.0229732196439755 -0.0556961604082163 0.0315650149630927 -0.252033804993662 -0.366564097668505 -0.0393346900260959
MMP0717 -0.563481885948285 0.693130673967925 0.136292900088906 0.206190078637796 -0.307364077052229 -0.494828894833979 4.73839326709192 0.485760246507142 -0.437184221856428 -0.476045041576999 -0.563481885948285 -0.242880123253571 -0.738355574690856 -0.0777216394411427 -0.65091873031957 -0.00971520493014285 -0.0291456147904285 -0.291456147904285 0.0485760246507141 -0.0485760246507142 -0.680064345109999 2.18592110928214 0.272025738044 -0.116582459161714 0.242880123253571 1.18525500147743 1.564147993753 1.55443278882285 1.60300881347357 0.0194304098602857 -0.262310533113857 0.0777216394411427 0.0874368443712855 0.485760246507142 0.388608197205714 0.58291229580857 0.0874368443712855 0.0388608197205714 -0.466329836646856 -0.553766681018142 -0.136012869022
MMP0993 -0.0889986652295363 0.0635464322574608 0.308628286606601 -0.0560824005481912 -0.485325106657225 -0.492896555885919 6.54540246950214 0.545600512928897 0.305691067527538 -0.150910780171822 -0.607512627871183 -0.653946714077897 -0.344386139366467 0.328908110630895 0.197344866378537 0.28247402442418 1.00220236062826 1.2498508203974 1.04863644683497 0.870639116375899 0.28247402442418 0.437254311779896 -0.0967376795973221 -0.37534219683761 0.034825564655036 0.770031929594684 0.88611714511147 0.607512627871183 1.20341673419069 0.00386950718389289 -0.197344866378537 0.150910780171822 -0.0425645790228218 -0.0967376795973221 0.034825564655036 -0.034825564655036 -0.212822895114109 -0.205083880746323 -0.437254311779896 -0.444993326147682 -0.0503035933906075
MMP0994 -0.146762311061332 -0.0559256626484253 0.186344352096117 -0.125688738120651 0.2266199440299 0.0918200036800955 6.72753190736256 0.433460779181143 0.0170653850071316 -0.228676159095564 -0.331068469138354 -0.447113087186849 -0.440286933183996 0.0580223090242475 0.426634625178291 0.433460779181143 0.60411462925246 0.713333093298102 0.645071553269575 0.50172231920967 0.767942325320923 0.726985401303807 0.030717693012837 -0.105805387044216 0.174066927072743 0.774768479323776 1.00685771542077 0.686028477286691 1.66899465369747 0.030717693012837 -0.201371543084153 -0.0921530790385108 -0.344720777144059 -0.344720777144059 -0.426634625178291 -0.29693769912409 -0.310590007129796 -0.221850005092711 -0.460765395192554 -0.549505397229638 -0.249154621104122
MMP0995 -0.526306095616856 -0.314138231446917 -0.0258390462885408 0.133379281632483 0.060746385358198 -0.00869736587625436 6.81417076953288 0.0563709416528682 0.167609285131634 -0.261452896857891 -0.166105745304663 -0.314423536609684 -0.293235280708967 -0.0336791459251801 0.00869736587625439 -0.245561704932353 0.337115332337372 0.342412396312551 0.305332948486296 0.294738820535937 -0.102540977602511 0.66553329879849 0.0669650696032269 0.342412396312551 0.559592019294903 0.792662834202793 0.962168881408531 0.718503938550283 0.866821729855303 0.114638645379841 -0.139620425428766 0.035182685752151 -0.118432169528049 -0.404473624187732 -0.272047024808249 -0.351502984435939 -0.415067752138091 -0.616356183194905 -0.483929583815422 -0.468038391889884 -0.102540977602511
MMP1062 -0.601927791104684 -1.11340401651243 -0.608836378741973 -0.981222155254255 -0.759602667946234 -1.22723371678167 4.16411323062309 1.1112513066548 0.0308680918515222 0.154340459257611 -0.0154340459257611 -0.0771702296288057 -0.0926042755545667 0.694532066659251 0.524757561475878 0.41671923999555 0.385851148144028 0.586493745178923 0.787136342213817 0.864306571842623 1.29645985776393 0.524757561475878 -0.432153285921312 0 0.0617361837030445 0.0463021377772834 0.864306571842623 0.571059699253162 1.09581726072904 -0.941476801471429 -0.41671923999555 -0.463021377772834 -0.432153285921312 -0.447587331847073 -0.401285194069789 -0.0463021377772834 -0.262378780737939 -0.123472367406089 -0.879740617768384 -0.879740617768384 -0.648229928881967
MMP1578 -0.337387792783786 -0.463711047220848 -1.15895100705314 -0.587359130310245 -1.32381510476195 -1.59225071110146 5.76923854557577 0.102000960609052 0.376618931479575 -0.141232099304841 0.290310426348839 0.227540604435577 0.337387792783786 0.298156654087997 0.635544446871783 0.439388753392837 0.00784622773915782 0.125539643826525 0.149078327043998 0.368772703740417 0.517851030784416 0.737545407480834 0.188309465739787 -0.0706160496524203 0.141232099304841 1.02000960609052 1.21616529956946 0.612005763654309 1.27108889374357 -0.0313849109566312 -0.149078327043998 0.149078327043998 -0.219694376696419 -0.282464198609681 -0.133385871565683 -0.00784622773915782 -0.0549235941741047 -0.0549235941741047 -0.102000960609052 -0.400157614697048 -0.0549235941741047
MMP1597 -0.655699975939445 -0.622821712856131 -0.0611282549789791 -0.973297294521604 -0.863103423382431 -1.1004321193667 5.8842120665403 0.810589734035377 0.38722439523983 0.252986604890022 -0.0361409435557174 -0.139400782286339 0.180704717778587 0.294290540382271 -0.459506282351265 -0.542114153335762 0.180704717778587 -0.191030701651649 0.118748814540214 0.263312588763084 -0.232334637143898 0.748633830797004 -0.160052750032463 -0.0258149596826553 -0.0154889758095932 0.738307846923942 1.06873933086193 0.542114153335762 0.769285798543129 0.0671188951749038 0.118748814540214 0.0877708629210281 0.0774448790479659 -0.0361409435557174 0.0877708629210281 0.139400782286339 -0.0567929113018417 -0.0980968467940902 -0.345920459747581 -0.428528330732078 0.0361409435557174
[+] Show/hide bicluster #144 motif PSSM #1. bicluster 144 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0.777778 0.222222 0 0
2 0.222222 0.777778 0 0
3 0.111111 0.888889 0 0
4 0 0.111111 0.888889 0
5 0 0.111111 0.888889 0
6 1 0 0 0
7 0.777778 0.222222 0 0
8 0 0 0 1 [+] Show/hide bicluster #144 motif PSSM #2. bicluster 144 motif PSSM #2 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0 0.5 0.5 0
2 1 0 0 0
3 0 0 1 0
4 0 0 1 0
5 0 0 0 1
6 0 0.5 0.5 0
7 0 0.5 0 0.5
8 0 0 1 0
9 1 0 0 0
10 0 0 0 1
11 0 0 1 0
12 0 0 0 1
13 1 0 0 0
14 1 0 0 0
15 0 0 1 0
16 0 0.5 0.5 0
17 0 1 0 0
18 0 0 0 1
19 0.5 0 0 0.5
20 0 1 0 0 |