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bicluster 142
Methanococcus maripaludis S2
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bicluster 142 genes
Methanococcus maripaludis S2
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bicluster 142 short names
Methanococcus maripaludis S2
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bicluster 142 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #142 rows (NCBI RefSeq gene IDs).
bicluster 142 NCBI RefSeq IDs
Methanococcus maripaludis S2
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bicluster 142 upstream sequences
Methanococcus maripaludis S2
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upstream
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bicluster 142 arrays
Methanococcus maripaludis S2
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bicluster 142 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0008 -0.475394780796338 0.286165365878728 0.16993839580469 -4.69941101980222 0.809455978112684 -0.154182091069083 0 0.0642425379454511 0.115636568301812 0.141333583479992 0.770910455345413 -0.0899395531236315 -0.102788060712722 0.115636568301812 0.0385455227672706 0.218424629014534 0.128485075890902 0.128485075890902 0.256970151781804 0 0.321212689727255 0.57818284150906 1.29769926649811 1.23345672855266 0.835152993290864 1.00218359194904 0.321212689727255 -0.0128485075890902 -0.449697765618158 -0.372606720083616 -0.60387985668724 -0.706667917399962 -0.61672836427633 -0.693819409810872 -0.475394780796338 -0.539637318741789 -0.513940303563609 0.0128485075890902
MMP0017 -0.476883475864654 -0.212951769364464 0.746167150643006 -3.69864660945821 0.473768376992449 0.819459959849577 0.0704615303257991 0.0416538984210384 -0.015961365388483 -0.0591728132456241 -0.0303651813408634 0.0128462665162777 0.430556929135308 0.430556929135308 0.747440880087675 0.228903505801983 0.502576008897209 0.156884426040081 0.502576008897209 0.0848653462781794 -0.419268212055133 -0.174403340864667 0.632210352468632 0.257711137706744 -0.232018604674188 0.0128462665162777 -0.520094923721795 -0.664133083245599 -0.520094923721795 -0.606517819436077 -0.520094923721795 0.0704615303257991 0.200095873897222 0.0416538984210384 -0.0303651813408634 -0.462479659912274 -0.692940715150359 -0.649729267293218
MMP0019 0.375854495768319 0.551682497519388 0.100120838405641 -4.3998818326844 0.906325939368065 0.493737038790485 -0.0131578962048282 -0.614358865617874 -0.708664900035606 -0.520052831200141 -0.461111559689058 -0.861912205964422 -0.791182680151122 0.328701478559453 0.694137361928167 0.328701478559453 0.293336715652803 0.210818935537287 0.599831327510434 0.988843719483581 -0.425746796782408 0.552678310301568 0.446584021581618 0.835596413554765 0.505525293092701 0.470160530186052 -0.402170288177975 -0.0367344048092614 -0.425746796782408 -0.543629339804574 -0.685088391431173 -0.189981710738077 -0.131040439226994 -0.272499490853593 0.151877664026204 -0.131040439226994 -0.614358865617874 -0.319652508062459
MMP0021 0.580588357377056 0.63641499876813 0.827179163348803 -3.91168178867525 0.889712664055303 0.313617365245843 -0.0517113608284484 -0.164120199620538 -0.41704008690274 -0.782368812977031 -0.41704008690274 -0.824522127524065 -0.487295611147796 -0.248426828714605 0.833508244659258 0.411975099188922 0.39792399433991 0.369821784641888 0.229310736151776 0.721099405867168 -0.0657624656774596 0.608690567075079 -0.206273514167572 0.327668470094854 0.0747485828126525 0.229310736151776 -0.19222240931856 -0.164120199620538 -0.402988982053729 -0.19222240931856 0.0325952682656189 -0.00955804628141474 -0.136017989922516 -0.684011079033953 -0.571602240241863 -0.936930966316155 -0.65590886933593 -0.121966885073504
MMP0113 0.173963909670096 0.587284619390879 0.320514064562648 -4.53680488215179 0.55259124248148 -0.0818653692565155 0.245596107769547 -0.0102331711570644 0.358160990497255 0.378627332811384 0.388860503968449 0.163730738513031 0.0204663423141289 0.163730738513031 0.173963909670096 0.306995134711933 0.317228305868998 0.624223440580931 0.695855638680382 -0.0716321980994511 -0.419560017439642 0.757254665622769 0.562824413638544 0.869819548350478 0.542358071324415 0.849353206036349 -0.306995134711933 -0.296761963554869 -0.296761963554869 -0.235362936612482 -0.450259530910835 -0.450259530910835 -0.214896594298353 -0.501425386696158 -0.429793188596707 -0.4604927020679 -0.429793188596707 -0.286528792397804
MMP0119 -0.640197151246808 0.152591495770507 -0.15835246988529 -5.37101850640906 0.726377536991571 0.0246229673556465 0.541705281824222 -0.0492459347112929 0.270852640912111 0.480147863435106 0.590951216535515 -0.849492373769803 -0.480147863435106 0.701754569635924 0.135426320456056 0.0738689020669394 -0.0738689020669394 0.0369344510334697 0.246229673556465 0.147737804133879 -0.110803353100409 -0.123114836778232 0.443213412401636 0.590951216535515 0.45552489607946 0.554016765502045 0.0123114836778232 -0.0861803857447626 -0.123114836778232 -0.123114836778232 -0.41859044504599 -0.110803353100409 0.160049287811702 0.160049287811702 0.283164124589934 -0.147737804133879 -0.196983738845172 -0.480147863435106
MMP0120 0.272204884705857 -0.202287980971222 -0.312031511921673 -2.63318031985209 0.0194432060504184 0.00972160302520918 0.544409769411713 0.0194432060504184 0.359699311932739 0.806893051092361 0.602739387562968 0.456915342184831 -0.155545648403347 0.0972160302520917 0.486080151260458 -0.252761678655438 0 -0.184710457478974 -0.0972160302520916 0.388864121008367 -0.106937633277301 -0.0972160302520916 0.690233814789851 0.680512211764642 0.855501066218407 0.563852975462132 -0.0194432060504184 -0.46663694521004 -0.23331847260502 -0.272204884705857 -0.495801754285667 -0.301369693781484 -0.0777728242016733 0.0194432060504184 0 0.0388864121008367 0 -0.486080151260458
MMP0225 0.197633039483103 0.673710322050914 0.251306663523044 -4.45913412952446 0.628832398355329 -0.137744239639739 -0.0179666399530094 -0.281477359263814 -0.161699759577085 -0.197633039483103 -0.137744239639739 -0.377299439013198 -0.556965838543292 0.449165998825235 0.700698958167367 0.5090547986686 0.533010318605946 0.652787918292675 0.808498797885423 0.185655279514431 -0.0179666399530094 0.461143758793908 0.365321679044525 0.652787918292675 0.652787918292675 0.533010318605946 0.0538999198590282 -0.269499599295141 -0.533010318605946 -0.365321679044525 -0.688721198198694 -0.556965838543292 -0.317410639169833 -0.293455119232487 -0.0658776798277011 -0.197633039483103 -0.461143758793908 -0.341366159107179
MMP0324 0.155887485123235 0.992281464492527 -0.571021186524083 -2.81988186574217 1.30378623921251 0.255088612019839 -0.31177497024647 -0.226745432906523 -0.368461328473101 -0.226745432906523 0.779437425616174 -0.708579477832886 -0.269260201576497 0.226745432906523 0.0283431791133155 -0.099201126896604 0.722751067389544 0.722751067389544 0.765265836059517 1.67224756768561 -0.552691992709651 0.736922656946201 0.765265836059517 1.04869762719267 2.08322366482868 1.34630100788248 -0.765265836059517 -0.382632918029758 -0.453490865813047 -0.396804507586416 0.113372716453262 0.31177497024647 -0.0425147686699731 -0.68023629871957 -0.382632918029758 -1.03452603763601 -1.36047259743914 -0.566863582266309
MMP0544 -0.163951870309414 0.425006414547766 -0.0131512571852488 -2.71645794983216 0.295113366556945 -0.491855610928242 0.105657871977178 -0.0327903740618828 0.426274862804476 0.593870108009654 0.484568861136712 0.265966367390827 0.0400771238534121 0.236819368224709 0.36069411468071 0.127518121351766 0.331547115514592 0.572009858635066 0.688597855299538 -0.0910843723941189 -0.105657871977178 -0.00364337489576475 0.994641346543777 0.943634098003071 0.848906350713187 0.5064291105113 0.00364337489576475 -0.0619373732280008 -0.630303856967302 -0.469995361553653 -0.615730357384243 -0.681311105508009 -0.579296608426596 -0.608443607592714 -0.601156857801184 -0.477282111345183 -0.0619373732280008 -0.0327903740618828
MMP0545 0.257512191546917 1.08410852873447 0.605846390526996 -4.88592567691969 -0.146684159741915 -0.453091071202803 -0.153203455730444 -0.172761343696033 0.290108671489565 0.368340223351919 0.36182092736339 0.237954303581328 -0.00325964799426477 0.0684526078795602 -0.0162982399713239 -0.250992895558387 -0.042375423925442 0.257512191546917 0.36182092736339 -0.472648959168392 0.0880104958451489 -0.237954303581328 0.863806718480165 0.49872614312251 0.531322623065158 0.329224447420742 0.146684159741915 0.00325964799426477 -0.400936703294567 -0.36182092736339 -0.394417407306037 -0.492206847133981 -0.381378815328978 -0.257512191546917 -0.303147263466624 -0.257512191546917 0.205357823638681 0.0358561279369125
MMP0727 -0.306768975650406 -0.867469384683523 -0.7068098627349 -2.69463099424665 0.645001435982905 -0.031463484682093 0.141585681069418 -0.361830073844069 -0.235976135115697 -0.196646779263081 -0.0707928405347091 -0.353964202673545 -0.314634846820929 -0.0157317423410465 1.02256325216802 0.314634846820929 0.141585681069418 0.204512650433604 0.141585681069418 1.17201480440796 -0.251707877456743 0.259573748627267 0.432622914378778 0.440488785549301 0.519147497254533 0.448354656719824 -0.235976135115697 -0.157317423410465 -0.448354656719824 -0.228110263945174 -0.235976135115697 0.0471952270231394 0.188780908092557 -0.0471952270231394 -0.0393293558526162 -0.385427687355638 -0.527013368425056 -0.283171362138836
MMP0728 -0.240174116479349 -0.00264445613481663 -0.806522837086665 -2.55768634011607 1.07798384914041 0.0951467695116418 -0.0898578572420084 -0.633308948330856 -0.471429899921412 -0.413615954060897 -0.147671803102524 -0.540806634954031 -0.529243845781928 -0.112983435586215 1.02016990327989 0.707974595633108 0.326402552953705 0.361090920470014 0.41890486633053 2.25738834469493 -0.714248472535578 0.453593233846839 0.303276974609498 0.673286228116799 0.569221125567871 0.465156023018942 -0.760499629223991 -0.112983435586215 -0.471429899921412 -0.263299694823556 -0.517681056609825 0.129835137027951 0.442030444674736 0.00264445613481679 0.164523504544261 -0.563932213298237 -0.899253099289228 -0.39049037571669
MMP0986 -0.0781409204436241 1.06284331069297 0.0636688012186625 -4.62821728065178 0.943701885357614 0.39070460221812 -0.0661192403753742 -0.0781409204436241 0.0901626005118739 0.258466121467372 0.318574521808621 -0.114205960648374 -0.306552841740371 0.102184280580124 0.0300542001706246 0.186336041057873 0.727311644129116 0.655181563719617 0.751355004265616 2.0496964516366 -0.546986443105369 0.126227640716623 0.45081300255937 0.534964763037119 0.534964763037119 1.36446068774636 -0.559008123173618 -0.342617881945121 -0.871571804948115 -0.907636845152864 -0.895615165084615 -0.42676964242287 -0.210379401194373 -0.498899722832369 -0.330596201876871 -0.847528444811615 -0.775398364402116 -0.498899722832369
MMP1009 -0.578461153069588 0.87736528588478 -0.0686807257588752 -3.94316574812773 1.88413061285523 0.264439384260383 0.264439384260383 -0.280966845776657 -0.280966845776657 -0.363604153358027 -0.214856999711561 -0.710680845199779 -0.611516076102136 0.528878768520766 -0.280966845776657 0.578461153069588 0.231384461227835 0.380131614874301 0.380131614874301 0.578461153069588 -0.297494307292931 0.661098460650958 0.661098460650958 0.429713999423123 0.413186537906849 2.29731715076208 -0.264439384260383 -0.016527461516274 -0.314021768809205 -0.0495823845488218 -0.0991647690976436 0.0826373075813697 0.280966845776657 -0.0495823845488218 0.0495823845488219 -0.495823845488218 -0.264439384260383 -0.280966845776657
MMP1062 -0.601927791104684 -0.441576388320826 -0.608836378741973 -2.92678104846028 1.1112513066548 0.0308680918515222 0.385851148144028 -0.108038321480328 0.154340459257611 0.185208551109134 0.509323515550117 -0.0771702296288057 -0.0926042755545667 0.694532066659251 0.524757561475878 0.447587331847073 0.385851148144028 0.787136342213817 0.864306571842623 1.29645985776393 -0.910608709619906 0.524757561475878 0.0463021377772834 0.864306571842623 0.571059699253162 1.09581726072904 -0.941476801471429 -0.41671923999555 -0.463021377772834 -0.432153285921312 -0.447587331847073 -0.0463021377772834 0.200642597034895 -0.262378780737939 -0.123472367406089 -0.879740617768384 -0.879740617768384 -0.648229928881967
MMP1080 -0.599503515115981 1.15587430103678 0.959113467172995 -3.25758411551789 0.532892013436427 0.383016134657432 -0.0666115016795534 0.0166528754198884 0.316404632977879 -0.183181629618772 -0.149875878778995 -0.366363259237544 -0.283098882138102 0.183181629618772 0.29975175755799 -0.0999172525193302 0.0832643770994418 -0.166528754198883 0.0499586262596651 0.716073643055199 -0.216487380458549 -0.183181629618772 0.599503515115981 0.582850639696092 0.233140255878437 0.466280511756874 -0.283098882138102 -0.632809265955757 -0.0666115016795534 0.116570127939218 0.466280511756874 0.566197764276204 0.183181629618772 -0.116570127939218 -0.39966901007732 -0.39966901007732 -0.516239138016539 -0.566197764276204
MMP1141 -1.1321365355562 0.856851542570688 -0.171668270166179 -4.39247398465162 0.5839441078132 0.190675627041045 0.0953378135205225 -0.0834205868304572 -0.035751680070196 -0.0238344533801306 0.798454188234376 -0.619695787883396 -0.572026881123135 0.20259285373111 0.0238344533801306 -0.119172266900653 0.119172266900653 0.309847893941698 1.06063317541581 0.548192427743004 0.238344533801306 0.536275201052939 1.4777361095681 1.35856384266745 1.00104704196549 1.90675627041045 0.274096213871502 -0.309847893941698 0.476689067602612 -0.0595861334503266 -0.548192427743004 -0.357516800701959 -0.154923946970849 -0.131089493590718 -0.131089493590718 -0.452854614222482 -1.07255040210588 -0.38135125408209
MMP1228 0.22492486771911 0.100441716316219 -0.225916297977467 -4.36062280614494 1.1631828873474 0.250630566887008 0.353453363558601 -0.122102071047517 1.62588547236957 -0.0192792743759236 0.507687558565991 0.0578378231277711 -0.302041965222805 0.443423310646245 -0.147807770215415 0.199219168551212 -0.0449849735438219 0.353453363558601 0.173513469383313 0.700480302325228 -0.122102071047517 0.81615594858077 1.07321294025975 1.8443839152967 0.983242993172109 0.854714497332617 -0.212072018135161 0.0578378231277711 -0.649068903989431 -0.546246107317838 -0.893273046084465 -0.443423310646245 -0.134954920631466 -0.404864761894398 0.0321321239598729 -0.302041965222805 -0.340600513974652 -0.00642642479197457
MMP1236 -0.220668830751002 -0.271428619882163 0.0187565834884085 -3.97828232513233 0.650392343266112 -0.0232282979737897 0.0580707449344743 -0.0464565959475795 0.116141489868949 0.0929131918951589 0.185826383790318 -0.0348424469606846 -0.290353724672372 0 0.127755638855843 0.232282979737897 0 0.104527340882054 0.116141489868949 0.522636704410269 0.325196171633056 0.871061174017114 0.882675323004009 1.03365925983364 0.975588514899168 1.23109979261086 0.418109363528215 0.0464565959475794 -0.638778194279217 -0.476180108462689 -0.650392343266112 -0.464565959475794 -0.348424469606846 -0.441337661502005 -0.290353724672372 -0.522636704410269 -0.150983936829633 -0.0348424469606846
MMP1264 0.0936676615586544 0.857125563222495 0.407967505348514 -4.25594506311133 0.104687386447908 -0.170805735783429 0.203864910451189 0.115707111337161 -0.082647936669401 -0.060608486890894 -0.0716282117801475 -0.380180508679244 -0.336101609122231 0.192845185561936 -0.126726836226415 -0.159786010894175 -0.0165295873338802 -0.0275493122231337 -0.104687386447908 0.0165295873338802 0.236924085118949 0.765870879803116 0.622614456242821 0.765870879803116 0.633634181132074 0.931166753141918 0.203864910451189 -0.115707111337161 -0.0495887620016406 -0.137746561115668 -0.236924085118949 -0.170805735783429 0.0385690371123871 0.137746561115668 0.26998325978671 -0.0495887620016406 -0.159786010894175 -0.214884635340443
MMP1346 0.557662478469231 -0.589994062267085 -0.388569526994154 -3.11956072457309 0.581160908445344 0.216935243815591 0.134690738899195 0.310928963720043 0.3226781787081 0.216935243815591 0.169938383863365 -0.370525505587236 -0.194287280766388 -0.0415474859216532 0.369675038660326 0.205186028827534 0.722151488302022 0.28743053374393 0.428421113600609 0.440170328588665 -0.66425588028865 0.3226781787081 0.510665618517004 0.898389713122871 0.487167188540891 0.910138928110927 -0.734751170216989 -0.170788850790275 -0.781748030169216 -0.32352864563501 0.0171985890186295 -0.0180490559455401 -0.170788850790275 -0.640757450312537 -0.35877629059918 -0.734751170216989 -0.640757450312537 0.0759446639589123
MMP1398 0.379288829938667 0.0522360587461918 0.106174993549557 -2.85232984690139 0.222341727895081 -0.0741139092983602 -0.257218861682544 -0.54495521542912 -0.353130979598069 -0.0653946258514943 -0.0392367755108966 0.0479560589577626 -0.0392367755108966 0.0915524761920921 0.213622444448215 -0.0217982086171647 0.204903161001349 0.0217982086171648 0.11771032653269 -0.0828331927452261 0.26593814512941 0.658305900238376 1.39072570977511 1.31225215875332 1.21634004083779 0.989638671219281 0.239780294788813 0.196183877554483 -0.318253845810606 -0.562393782322851 -0.84141085262256 -0.257218861682544 0.143868176873288 0.335692412704338 0.248499578235679 -0.0828331927452261 -0.0741139092983602 0.204903161001349
MMP1485 0.605436390872929 0.342962838890119 0.802396099850156 -4.11771639536469 0.517143583870627 0.302718195436465 -0.0882928070023021 -0.0504530325727441 -0.0378397744295581 -0.340557969866023 -0.239651904720534 -0.403624260581953 -0.580209874586557 -0.025226516286372 -0.025226516286372 0.466690551297883 0.277491679150092 0.567596616443371 0.0756795488591161 -0.554983358300185 0.0630662907159301 0.491917067584255 0.85770155373665 1.07212694217081 0.971220877025324 0.18919887214779 0.025226516286372 -0.580209874586557 -0.996447393311696 -0.92076784445258 -0.85770155373665 -0.378397744295581 -0.18919887214779 -0.353171228009209 -0.290104937293279 -0.454077293154697 -0.0882928070023021 -0.567596616443371
MMP1597 -0.655699975939445 -0.596400060316998 -0.0611282549789791 -3.54008409495365 0.810589734035377 0.38722439523983 0.160052750032463 0.0361409435557174 0.252986604890022 -0.0980968467940902 0.118748814540214 -0.139400782286339 0.180704717778587 0.294290540382271 -0.459506282351265 0.0154889758095932 0.180704717778587 0.118748814540214 0.263312588763084 -0.232334637143898 -0.0361409435557174 0.748633830797004 0.738307846923942 1.06873933086193 0.542114153335762 0.769285798543129 0.0671188951749038 0.118748814540214 0.0877708629210281 0.0774448790479659 -0.0361409435557174 0.139400782286339 0.211682669397774 -0.0567929113018417 -0.0980968467940902 -0.345920459747581 -0.428528330732078 0.0361409435557174
[+] Show/hide bicluster #142 motif PSSM #1. bicluster 142 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.6 0 0.4
2 0 1 0 0
3 0.2 0.2 0.6 0
4 0 1 0 0
5 0 0.6 0.4 0
6 0.4 0 0.6 0
7 0 0.2 0.2 0.6
8 0 0.4 0.6 0
9 1 0 0 0
10 0.8 0 0.2 0
11 0 1 0 0 [+] Show/hide bicluster #142 motif PSSM #2. bicluster 142 motif PSSM #2 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 0 1 0 0
2 0 0.5 0.5 0
3 1 0 0 0
4 0 0.75 0.25 0
5 0.25 0.75 0 0
6 0.75 0.25 0 0
7 0 0 0 1
8 0 0 0 1
9 0 0 1 0
10 0 0.25 0.25 0.5
11 0.5 0 0 0.5
12 0.5 0.25 0 0.25
13 0 0 1 0
14 0 0.5 0.5 0 |