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[+] Show/hide bicluster #141 rows and columns.
bicluster 141
Methanococcus maripaludis S2
16x38
[+] Show/hide bicluster #141 rows (genes).
bicluster 141 genes
Methanococcus maripaludis S2
16
[+] Show/hide bicluster #141 rows (short gene names).
bicluster 141 short names
Methanococcus maripaludis S2
16
short_name
[+] Show/hide bicluster #141 rows (long gene names).
bicluster 141 long names
Methanococcus maripaludis S2
16
long_name
[+] Show/hide bicluster #141 rows (NCBI RefSeq gene IDs).
bicluster 141 NCBI RefSeq IDs
Methanococcus maripaludis S2
32
[+] Show/hide bicluster #141 gene upstream sequences.
bicluster 141 upstream sequences
Methanococcus maripaludis S2
16
upstream
[+] Show/hide bicluster #141 columns (arrays; conditions).
bicluster 141 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #141 ratios.
bicluster 141 ratios
Methanococcus maripaludis S2
16x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
MMP0137 0.141235771932998 -0.101821137905185 1.63674281998854 -0.126690885147469 0.115058542743426 0.381723806721995 0.583626340293693 -4.66554283234371 -3.68193539985447 0.771869916378012 0.535382112211132 -0.0492682925347667 -0.259479674016438 -0.259479674016438 -0.0229918698495578 0.778439022049314 0.390861787442483 -0.0426991868634645 -0.844130078762336 -1.47476422320735 -1.3236747927674 -0.936097558160567 -0.699609753993687 -1.19886178501266 -0.982081297859683 -0.870406501447545 -0.469691055498109 -0.476260161169411 -0.108390243576487 0.331739836400762 0.88354471279015 1.00835772054489 0.732455282350198 0.666764225637176 0.666764225637176 0.581365851910247 0.555089429225038 -0.535382112211132
MMP0319 0.49661784557015 0.175276886671818 1.46301240355631 -0.244476328118714 0.347795090424307 0.346329434835562 0.915443485338809 -2.99595153078794 -4.49575687040661 0.642681917796664 -0.214227305932221 -0.223964910747322 -0.155801677041616 0 1.12956215855171 0.0584256288906058 0.165539281856717 0.477142635939948 -0.954285271879895 -0.89585964298929 -0.944547667064795 -1.30483904522353 -1.26588862596313 -0.954285271879895 -1.11982455373661 -1.05166132003091 -0.223964910747322 -0.321340958898332 0.00973760481510098 -0.116851257781212 0.0584256288906058 0.350553773343635 0.438192216679544 0.564781079275856 0.70110754668727 0.632944312981563 0.564781079275856 -0.370028982973837
MMP0320 0.396691390462121 0.248593271356262 1.52420245291311 0.331793810875285 0.547538739580438 0.99781669462581 1.17248250556337 -4.48098973667 -4.18722635915302 0.777515125305757 0.089916715171414 -0.0370245297764646 -0.132230463487374 0.0687598410134343 0.587103257883939 0.100495152250404 -0.163965774724343 -0.111073589329394 -0.49189732417303 -0.872721059016666 -1.29585854217626 -1.39106447588717 -1.19007417138636 -0.915034807332625 -0.608260132041919 -0.364956079225151 0.0687598410134343 -0.259171708435252 0.0158676556184848 -0.0793382780924242 0.0158676556184848 0.248593271356262 0.47074045001505 0.49189732417303 0.587103257883939 0.671730754515858 0.576524820804949 -0.290907019672222
MMP0340 0.250939482589964 0.250939482589964 0.800728172822459 0.313958026810397 0.487758851434074 0.718389234188741 0.85401314513154 -4.21735660155205 -4.50313141046058 0.478715320633163 0.347454668201489 -0.250939482589964 -0.0579091113669148 0.023163644546766 0.220054623194276 0.335872845928106 0.270242519712269 -0.200751586071971 -0.953570033841864 -0.675606299280673 -0.710351766100822 -1.088691293698 -1.34349138371242 -1.47861264356856 -1.27013984264767 -1.27786105749659 -0.335872845928106 -0.38992134987056 0.281824341985652 0.42852742411517 0.675606299280673 0.806866951712347 0.671745691856212 0.46713349835978 0.416945601841787 0.208472800920893 0.393781957295021 -0.362897097899333
MMP0919 0.413289524018832 0.36713536397612 1.07110946490564 0.66477936304217 0.765698778054247 0.788560368498197 0.870344251973234 -4.57753578301605 -3.87034204340694 -0.0356645782148231 0.715389480662039 0.190910389267582 0.0146854145590448 -0.216085385654516 0.0944062364510022 -0.0146854145590448 -0.165735392880648 -0.329372869395719 -1.18112691382032 -1.17693108108916 -1.18112691382032 -1.06783943007911 -1.13916858650876 -1.44546437588312 -1.15175608470223 -1.09301442646605 -0.362939531244964 -0.27063121115954 0.17412705834296 0.765739473435907 0.91678945175751 0.698606149737416 0.300002040277629 0.232868716579139 0.320981203933408 0.169931225611804 0.199302054729894 -0.27063121115954
MMP0920 0.199468833644128 0.354986907332769 1.43098166370591 0.861561419222949 0.955701499328353 1.21084654713511 1.27211392003636 -3.48038240119061 -1.98574332225706 -0.24003876591073 0.929727614442968 0.0371891045777187 0.0845206922220879 -0.077759036844321 -0.0709973814665539 0.118328969110923 -0.0236657938221847 -0.747162919243258 -1.17314720804258 -1.09876899888714 -1.4774217000421 -1.24076376182025 -1.70055632750841 -2.39700683141841 -1.36923521399782 -1.33542693710899 -0.699831331598888 -0.578121534799082 0.327940285821701 0.889157682176365 1.07172237737608 1.04467575586501 0.530789947154712 0.334701941199468 0.564598224043548 0.158898901377525 0.226515455155196 -0.395556839599372
MMP0921 -0.74143141968189 -0.666349756929293 1.50407560523002 -0.085963323216993 0.304483340794111 0.459023364125309 1.24528461808518 -3.03069958525458 -4.21277542916322 0.760201835370039 0.159548533349267 0.197089364725566 -0.459875184359653 0.00938520784407456 0.0844668705966709 0.816513082434486 0.459875184359653 -0.0844668705966711 0.384793521607057 -0.929135576563381 -1.19192139619747 -0.666349756929293 -0.854053913810784 -1.24823264326192 -0.10323728628482 0.328482274542609 -0.497416015735951 -0.328482274542609 -0.30971185885446 -0.366023105918908 0.53495684711225 0.722661003993741 1.07929890206857 0.872824329498934 0.178318949037417 0.234630196101864 -0.760201835370039 -0.497416015735951
MMP0989 -0.0283079908174896 0.481235843897322 1.21443694335047 0.836269298793351 0.70617356712964 0.770369277513916 0.823108228179855 -4.21436128587079 -4.41092513615499 -0.015726661565272 0.0345986554435984 -0.279934575861841 -0.0408893200697071 -0.0031453323130544 -0.0597613139480335 0.802059739828871 0.871257050716068 0.368003880627364 -1.05368632487322 -0.575595813288954 -0.0283079908174896 -0.210737264974645 -0.990779678612135 -1.61984614122301 -0.273643911235732 -0.342841222122929 -0.0912146370785775 0.0283079908174896 -0.141539954087448 -0.0975053017046863 0.399457203757908 0.745443758193892 0.644793124176151 0.625921130297825 0.890129044594394 0.739153093567783 1.00336100786435 0.12895862483523
MMP1014 0.246333439995233 -0.00403825311467595 0.453816882053738 0.274510674163134 0.327633942345733 0.224669625423587 0.349029124243685 -4.16170728560678 -3.92866999590427 0.674388270150884 0.803612369820514 -0.0201912655733798 -0.327098502288752 -0.246333439995233 0.529011158022549 1.06206056915977 0.755153332444403 -0.18979789638977 0.00403825311467595 -1.21551418751746 -0.876300925884681 -0.642082245233476 -0.61785272654542 -0.690541282609587 -0.577470195398661 -0.504781639334494 -0.537087664251901 -0.650158751462828 -0.173644883931066 0.246333439995233 0.44824609572903 0.472475614417086 0.383634045894215 0.35940452720616 0.230180427536529 0.18979789638977 -0.0444207842614354 -0.714770801297643
MMP1085 0.117696179478099 -0.425516956574666 1.03301200674128 0.0543241654742409 0.464359212689969 0.46190636093478 0.10556151324931 -5.40286210424125 -3.57494249561794 0.325927881631659 0.0724284181403688 -0.0543213136052766 -0.0724284181403687 -0.199178149886014 -0.0181071045350922 0.235392358956198 -0.0543213136052766 -0.271606568026383 -0.769551942741418 -0.688069972333503 -0.941569435824793 -0.923462331289701 -0.878194569951971 -1.20412245158363 -0.697123524601049 -0.434570508842212 0.606588001925588 0.0181071045350922 0.633748658728226 0.62469510646068 0.688069972333503 0.841980360881786 0.887248122219517 0.606588001925588 0.841980360881786 0.633748658728226 0.642802210995773 0.289713672561475
MMP1086 -0.00614572671545314 -0.669884211984391 1.39743122111757 0.317188146284793 0.992455695294132 0.739924133994494 0.498492861373773 -4.88126196696897 -4.65056097340454 -0.485512410520797 0.0430200870081718 0.00614572671545297 0.0184371801463592 0.104477354162703 0.915713280602516 0.0798944473008906 -0.00614572671545314 -0.251974795333578 -0.583844037968048 -0.0184371801463594 -0.338014969349922 -0.534678224244422 -0.694467118846204 -0.866547466878892 -0.559261131106235 -0.522386770813516 0.448638050228079 -0.11676880759361 -0.00614572671545314 -0.129060261024516 -0.104477354162703 -0.043020087008172 0.215100435040859 0.178226074748141 0.251974795333578 0.31343206248811 0.264266248764485 -0.153643167886328
MMP1107 0.220953428761871 -0.372132090546309 1.43406614461524 -0.214421161593955 -0.0631902152507954 0.212316161536396 -0.300013670549999 -4.89067799286532 -4.51925198807344 -0.453535985353314 0.0465165113182887 0.511681624501175 0.0348873834887165 -0.139549533954866 0.43027772969417 0.127920406125294 0.43027772969417 0.407019474035026 -0.290728195739304 -1.45364097869652 -1.51178661784438 -0.418648601864598 0 -0.139549533954866 -0.0465165113182887 0.290728195739304 -0.127920406125294 -0.244211684421015 0.209324300932299 -0.290728195739304 -0.0116291278295722 -0.16280778961401 -0.220953428761871 -0.069774766977433 0.16280778961401 0.220953428761871 -0.348873834887165 -0.0581456391478609
MMP1108 -0.208726802685908 -0.736036619997674 1.28694060748766 -0.396488514057741 0.129324732078768 0.301619501745424 -0.15160504393343 -5.09987139433453 -4.34438689618027 -0.461396090147796 -0.0329568635819854 0.186755560297917 0 -0.0878849695519612 -0.38449674178983 0.208726802685908 0.0768993483579659 0.274640529849878 -1.01067714984755 -1.31827454327942 -1.17546146775748 -0.911806559101597 -0.736036619997674 -0.571252302087747 -0.274640529849879 -0.153798696715932 -0.461396090147796 -0.0549281059699757 0.307597393431864 0.340554257013849 0.516324196117772 0.516324196117772 0.560266680893752 0.648151650445713 0.823921589549635 0.582237923281743 0.0659137271639707 0.230698045073898
MMP1112 0.245553243729909 -0.149085897978873 1.52359527003669 0.786650319984615 0.490710752098271 0.193847202434807 0.627592697712562 -4.31005727945032 -5.03367043354984 0.0175395174092792 0.333250830776305 -0.00876975870463961 -0.175395174092792 -0.201704450206711 -0.263092761139188 0.684041178961889 0.543725039687656 0.00876975870463961 -0.727889972485087 -1.20145694253563 -0.236783485025269 -0.43848793523198 -0.420948417822701 -0.578804074506214 -0.841896835645402 -0.622652868029412 -0.613883109324773 -0.236783485025269 0.0789278283417565 0.385869383004143 0.622652868029412 0.587573833210854 0.578804074506214 0.43848793523198 0.464797211345899 0.412178659118062 0.201704450206711 -0.149085897978873
MMP1313 0.176492807409132 -0.0316781962016391 1.60796715547063 1.01318777024066 0.609266358356857 0.574527758772917 0.650952683288133 -5.11293092101272 -3.98167851352855 0.203645547010537 0.248900113012879 -0.113136415005854 -0.40276563742084 -0.466122029824118 0.267001939413815 0.610936641031611 0.710496686236762 0.0678818490035123 -0.665242120234421 -1.06348230105503 -1.42551882907376 -1.26260239146533 -1.13588960665877 -1.10873686705737 -0.411816550621308 -0.34846015821803 -0.475172943024586 -0.45707111662365 -0.194594633810069 0.058830935803044 0.321307418616625 0.34846015821803 0.312256505416157 0.158390981008195 -0.0407291094021074 -0.0769327622039807 -0.0950345886049173 -0.384663811019903
MMP1614 0.00805457335083519 -0.00805457335083519 1.8689342365764 0.0345515180478907 -0.192882352539756 0.0603742385734678 0.172030205883859 -4.58856329653047 -4.58650233257432 -0.169146040367539 0.0966548802100223 -0.507438121102617 -0.21747348047255 -0.241637200525056 0.104709453560858 0.579929281260134 0.21747348047255 -0.394674094190925 0.0161091467016704 -0.281910067279232 -0.668529588119321 -0.596038427961804 -0.386619520840089 -0.555765561207628 -0.161091467016704 -0.4349469609451 0.0483274401050112 -0.144982320315033 0.394674094190925 0.861839348539366 1.1679131358711 1.17596770922194 0.805457335083519 0.571874707909299 0.894057641942707 0.547710987856793 0.83767562848686 0.136927746964198
[+] Show/hide bicluster #141 motif PSSM #1. bicluster 141 motif PSSM #1 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 0.857143 0 0 0.142857
2 0 0 0.142857 0.857143
3 0.285714 0.714286 0 0
4 0 0.142857 0.428571 0.428571
5 0 0.714286 0.285714 0
6 0 0.428571 0 0.571429
7 1 0 0 0
8 0 0.285714 0 0.714286
9 0.142857 0 0 0.857143
10 0 0.714286 0.285714 0
11 0 0 0 1
12 0.285714 0.142857 0 0.571429
13 0.142857 0.142857 0 0.714286
14 0.714286 0 0.142857 0.142857
15 0 0.571429 0 0.428571
16 0.857143 0 0 0.142857
17 0.142857 0 0 0.857143
18 0.142857 0.142857 0 0.714286
19 0.285714 0.714286 0 0
20 0.285714 0.714286 0 0 [+] Show/hide bicluster #141 motif PSSM #2. bicluster 141 motif PSSM #2 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0 1 0
2 0 1 0 0
3 1 0 0 0
4 1 0 0 0
5 1 0 0 0
6 0 0 0 1
7 0 1 0 0
8 1 0 0 0
9 0 0 0 1
10 1 0 0 0
11 0 0 0 1
12 0 0 0 1
13 0 0 0 1
14 0 0 1 0
15 0 0 1 0
16 0 0 0 1
17 0 0 0 1
18 0 0 0 1
19 0 1 0 0
20 1 0 0 0
21 0 0 0 1
22 1 0 0 0
23 0 1 0 0 |