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[+] Show/hide bicluster #139 rows and columns.
bicluster 139
Methanococcus maripaludis S2
21x38
[+] Show/hide bicluster #139 rows (genes).
bicluster 139 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #139 rows (short gene names).
bicluster 139 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #139 rows (long gene names).
bicluster 139 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #139 rows (NCBI RefSeq gene IDs).
bicluster 139 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #139 gene upstream sequences.
bicluster 139 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #139 columns (arrays; conditions).
bicluster 139 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #139 ratios.
bicluster 139 ratios
Methanococcus maripaludis S2
21x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0056 1.15953567591353 1.40908031140238 0.396395417457559 0.562442849416099 0.408054735496107 0.414471271509585 0.0258013426584579 0.040277676507801 -3.72740266540372 -3.53357633533144 -0.275345978147298 -0.244152898711193 0.322521377711382 -0.088187501530668 -0.088187501530668 -0.197363279557036 -0.0621932686672471 0.280930605129909 0.707236024090011 1.3674895388209 0.504481007755328 0.384907536583592 0.754025643244169 0.702037177517327 0.883996807561274 0.488884468037276 0.327720224284066 0.27053291198454 -0.904406413442084 -0.821224868279137 -0.660060624525928 -0.758838709406927 -0.997985651750399 -0.914804106587452 -0.847219101142558 -0.956394879168926 1.52865378257411 0.109368668231331
MMP0152 1.68474654740368 1.60148872384013 -0.368782928525223 1.24358541345869 0.940543019139858 0.545578017531162 0.536953359178289 0.539091096851145 -3.92398398478898 -3.62462734085652 0.0146925570994507 -0.553419650745976 -0.146925570994507 -0.132233013895056 -0.494649422348173 -0.528932055580225 0.20079828035916 -0.935426135331694 -0.494649422348173 0.744422893038835 0.920733578232244 0.886450945000192 0.857065830801291 0.646472512375831 0.759115450138286 0.563214688812277 0.41628911781777 -1.043171554061 -0.259568508756962 -0.396699041685169 -0.382006484585718 -0.377108965552568 -0.553419650745976 -0.543624612679676 -0.42118663685092 -0.259568508756962 0.0391801522652019 0.710140259806784
MMP0353 0.746339711816252 0.740620633564786 1.50660500743474 0.831387958640526 1.11485172163325 1.22873649321117 1.27427318398536 1.23536470473688 -4.22938277406796 -4.07030562882199 -0.448947642740044 -0.197308199675561 0.346004234213665 0.18587004317263 -0.048612165137457 0.100083869400647 0.048612165137457 0.0200167738801294 -0.557610129517889 -0.191589121424095 0.260218060441682 0.111522025903578 0.151555573663837 0.13439833890944 0.048612165137457 0.18587004317263 0.294532529950475 -0.254498982190216 -1.95306522287548 -1.8329645795947 -1.42691002374065 -1.54129158876996 0.037174008634526 0.0257358521315949 -0.048612165137457 -0.260218060441681 -0.100083869400647 -0.0886457128977157
MMP0356 0.630265348053959 0.318595670444858 2.12696108971492 1.12369200641176 1.15986556661386 1.38253626398744 1.45279845969428 1.02038364793786 -3.76432587214991 -2.06760853784715 -0.173149820893945 -0.283965706266069 0.263187727758796 0.0900379068648512 -0.228557763580007 -0.24933574208728 -0.110815885372125 0.00692599283575779 -0.0346299641787889 0.346299641787889 0.429411555816983 0.526375455517592 0.588709391039412 0.214705777908491 0.12466787104364 -0.0207779785072734 0.159297835222429 -0.457115527160014 -1.04582491819943 -0.630265348053959 -0.664895312232748 -1.3297906244655 -1.5583483880455 -1.58605235938853 -1.36442058864428 -1.34364261013701 0.166223828058187 -0.0415559570145467
MMP0357 0.295295528412027 0.173865591494932 1.06887171402114 0.178531282922012 0.435821973252569 0.454265154998147 0.727672860007271 0.57946278688065 -5.62533854110965 -3.42004911454664 -0.720300307621861 -0.0855529101006808 0.179385134082073 0.00827931388071105 -0.135228793384947 -0.118670165623525 -0.47744043378767 -0.47744043378767 -0.267697815476324 0.107631080449244 0.0137988564678518 0.113150623036384 0.0358770268164145 -0.179385134082073 -0.173865591494932 -0.129709250797806 0.0137988564678518 -0.874847500061801 -0.102111537862103 0.0965919952749622 -0.422245007916263 -1.24465685340023 -1.38264541807874 -1.44887992912443 -1.22257868305166 -1.29985227927163 -0.229061017366339 0.0579551971649773
MMP0358 0.242541276106383 0.168724365987049 1.05604568016966 0.215532417408092 0.510279490489993 0.684080271749131 0.703841179858715 0.677096496063832 -5.44196069202032 -4.14623223758964 -0.400720369219241 0.137088547364477 -0.0843621829935244 0.158179093112858 -0.0790895465564291 -0.0158179093112858 -0.268904458291859 -0.474537279338575 -0.110725365179001 -0.0896348194306196 0.0210905457483811 0 0.10018009230481 -0.226723366795097 -0.0790895465564291 -0.0158179093112858 0.0369084550596669 -0.806713374875577 -0.347994004848288 -0.237268639669287 -0.590535280954671 -0.964892467988435 -1.13888947041258 -1.14416210684967 -0.949074558677149 -0.885802921432006 -0.300540276914431 0.131815910927382
MMP0541 0.341041921204092 0.0541842304716782 1.65004561629339 0.641637162999528 0.465861307357877 0.620720609374391 0.854352824532938 0.922763405198031 -4.17934200425377 -4.04424789196179 -0.290044998407218 0.315543459805655 0.328292690504874 0.341041921204092 0.0414349997724598 -0.047809615122069 -0.277295767708 0.0031873076748046 -0.0733080765205058 -0.213549614211908 0.0733080765205057 -0.20080038351269 -0.207174998862299 -0.372914997952138 -0.417537305399402 -0.576902689139632 -0.525905766342759 0.404788074700184 -0.647023457985333 -0.19442576816308 -0.0924319225693333 -0.417537305399402 -0.270921152358391 -0.379289613301747 -0.51315653564354 -0.0031873076748046 1.1761165320029 0.0223111537236322
MMP0579 -0.216853188337681 0.00834050724375697 0.950058447625271 2.83951799284887 2.18785467846922 1.05940130489839 0.173736760990427 -0.460351353120108 -4.19633672337174 -3.17421330725881 0.250215217312709 -0.133448115900111 -1.70980398497018 -0.0250215217312709 0.0834050724375696 -0.116767101412597 0.341960796994035 0.0500430434625418 -0.333620289750278 -0.366982318725306 -0.266896231800223 -0.233534202825195 -0.166810144875139 0.00834050724375697 -0.150129130387625 -0.0917455796813266 0.0667240579500557 0.283577246287737 -0.558813985331716 -0.208512681093924 -0.183491159362653 -0.308598768019008 -0.316939275262765 -0.166810144875139 0.250215217312709 0.283577246287737 0.27523673904398 1.00920137649459
MMP0989 -0.0283079908174896 0.481235843897322 1.21443694335047 0.836269298793351 0.70617356712964 0.770369277513916 0.823108228179855 0.726719978664821 -4.21436128587079 -4.41092513615499 -0.852385056837741 -0.015726661565272 0.160411947965774 0.0345986554435984 -0.279934575861841 -0.122667960209121 -0.525270496280084 -0.0597613139480335 0.0031453323130544 0.355422551375147 0.802059739828871 0.871257050716068 0.871257050716068 0.512689167027866 0.537851825532302 0.368003880627364 0.154121283339665 -0.368003880627364 -0.0283079908174896 -0.210737264974645 -0.990779678612135 -1.61984614122301 -0.273643911235732 -0.342841222122929 -0.430910526888452 -0.883838379968285 0.75173442282 0.12895862483523
MMP1077 1.07437158168793 0.658485808131312 1.05555337426315 1.96338442789714 1.87409669817209 1.62709918562306 1.22239189025005 0.964005195611196 -4.25302390938649 -3.92256367300448 -0.231047651975899 -0.011552382598795 0.109747634688552 0.184838121580719 -0.0577619129939748 0.0519857216945773 0.0462095303951798 0.0519857216945773 0.121300017287347 -0.0924190607903596 -0.300361947568669 -0.369676243161438 -0.242600034574694 -0.456319112652401 -0.433214347454811 -0.438990538754208 -0.265704799772284 -0.103971443389155 -0.173285738981924 -0.398557199658426 -0.52563340824517 -0.675814382029505 -0.623828660334927 -0.866428694909621 -0.606500086436735 -0.508304834346978 1.30541923366383 0.646933425532517
MMP1117 0.667476136642292 0.437311951593226 2.36614629321397 1.48399281729096 0.999542844717286 1.12841540852038 0.699948786243968 0.372917334012456 -4.49333832067305 -4.35227136373589 0.584617030024629 0.455725086397151 0.133495227328458 -0.013809851102944 -0.170321496936309 -0.24397403615201 -0.105875525122571 -0.0322229859068693 0.170321496936309 0.161114929534346 -0.0598426881127572 0.105875525122571 0.013809851102944 0.0874623903186452 0.161114929534346 0.179528064338272 0.870020619485471 -0.115082092524533 -1.05415196752472 -1.04494540012276 -0.593823597426591 -0.584617030024629 -0.400485681985375 -0.0966689577206079 -0.105875525122571 -0.0506361207107946 0.216354333946122 -0.0414295533088319
MMP1189 0.131448526226584 -0.210813674136975 0.575264817275574 -0.204785806827711 0.296931283236408 0.42303249829706 0.475593337343083 0.417134338441091 -3.80049963158453 -3.7627961912831 -0.305059787280564 -0.75644906602091 -0.0570437000605933 0.106646917504587 0.042162734827395 0.00248016087219971 0.0124008043609985 -0.597718770200129 -0.746528422532112 0.161210456692981 0.0967262740157885 -0.00248016087219971 0.161210456692981 -0.25545656983657 -0.33482171774696 -0.329861396002561 -0.414186865657351 -0.528274265778537 -1.14335416208406 -0.523313944034138 -0.518353622289739 -1.02430644021848 -1.01438579672968 -0.811012605209304 -0.572917161478132 -0.582837804966931 1.81299759757799 0.602679091944529
MMP1327 0.0500981387820511 0.30514320894522 1.05689496125855 0.414099801905544 0.448786195601558 0.625577144090685 0.644702650541507 0.761032327772049 -4.68438936686673 -2.97495319988028 -0.64672142791375 -0.655830180419577 0.136631287587412 0.751472081730766 -0.186729426369463 -0.100196277564102 -0.387121981497667 -0.446328872785546 -1.24334471704545 0.0136631287587412 1.01107152814685 1.33443224210372 1.10215905320512 0.674047685431232 0.214055683886945 -0.104750653817016 -0.0956419013111884 -0.728700200466197 -0.409893862762236 -0.0136631287587412 -0.0819787725524472 -0.797015844259903 -1.30255160833333 -1.1932465782634 -0.742363329224938 -0.519198892832165 0.359795723980185 -0.173066297610722
MMP1328 -0.0194327947184751 0.240966654509091 0.815247176931487 0.275715134325806 0.269923776730365 0.257990074174396 0.336202626692826 0.266589361783006 -4.30536411948962 -3.74740503422924 -0.602416636272727 -0.388655894369501 0.373109658594721 0.855042967612903 -0.0272059126058651 -0.0699580609865103 -0.563551046835777 -0.423634924862757 -1.02216500219179 0.136029563029325 1.11932897578416 1.39527466078651 1.10378274000938 0.641282225709678 0.256512890283871 0.0272059126058651 -0.00777311788739004 -0.571324164723167 -0.804517701344868 -0.439181160637537 -0.361449981763636 -0.952206941205279 -1.20483327254545 -1.20094671360176 -0.878362321275073 -0.637395666765982 0.310924715495601 -0.0427521483806452
MMP1356 -0.213925612903618 -0.539226319553216 1.02774431766542 0.108929859162331 0.231183445661498 0.0310486715781717 -0.231972482856771 0.000447024164819031 -4.67273048116874 -4.07691641619641 0.396013212064379 0.385847564981579 0.345184976650379 -0.0817722008272186 -0.264753848317618 -0.600220202050015 -0.213925612903618 0.22319721165678 0.0808781524975805 -0.0817722008272186 0.741645212879577 0.711148271631177 0.619657447885977 0.22319721165678 0.548497918306378 0.568829212471977 0.304522388319179 0.253694152905179 -0.488398084139216 -0.600220202050015 -0.549391966636016 -0.651048437464015 -0.234256907069218 -0.335913377897217 -0.000447024164819067 -0.203759965820818 0.0198842700007808 -0.407072907476817
MMP1499 1.35846465193002 1.48816730713942 -0.167044978042138 1.0668604866941 0.606958675172031 0.534726549708086 0.370637365475514 0.262854301988027 -4.6722538115661 -4.52614559313634 -0.730430742495037 -0.143355566284073 0.0204793666120104 0.266231765956135 0.0204793666120104 -0.197967210582767 -0.505157709762923 -0.368628599016187 0.157008477358746 0.580248720673627 0.53246353191227 0.395934421165534 0.505157709762922 0.491504798688249 0.614380998360311 0.232099488269451 -0.0204793666120104 -0.450546065464228 0.511984165300259 -0.593901631748301 -0.477851887613575 -0.518810620837596 -0.566595809598954 -0.53246353191227 -0.259405310418798 -0.116049744134725 0.327669865792166 0.177487843970757
MMP1500 0.685179315638064 0.74666976704148 -0.0637608721249346 1.01037527488081 0.971899935199229 0.602880486695382 0.343072814648759 0.311208366103657 -5.23003314239445 -3.92160732482913 -1.49333953408296 -1.14196552606344 -0.193255704410736 -0.210824404811712 -0.158118303608784 0.17568700400976 -0.650041914836112 0 -0.500707961427816 0.26353050601464 -0.026353050601464 0 0.39529575902196 0.237177455413176 0.52706101202928 0.105412202405856 0.377727058620984 -0.729101066640504 -0.491923611227328 0.17568700400976 0.237177455413176 0.245961805613664 0.04392175100244 -0.140549603207808 0.325020957418056 0.158118303608784 0.281099206415616 0.325020957418056
MMP1554 0.92400479350019 0.685185093026295 1.17885053546385 0.988850534432515 1.00690909078645 0.889228909288734 0.946656842090139 0.684080256230069 -4.31677120085097 -4.33628471505439 0.110880575220023 -0.304210808936986 -0.105194391875406 -0.150683858632339 -0.287152258903136 -0.173428592010805 0.190487142044655 0.0483325584292407 0.588519976167813 1.19125541069717 0.75910547650631 0.651067992958596 0.742046926472461 0.560089059444731 0.662440359647829 0.474796309275482 0.332641725660068 -0.224604242112354 0.287152258903136 -0.520285776032415 -0.75910547650631 -0.724988376438611 -1.02066991035867 -1.00361136032482 -0.719302193093994 -0.486168675964716 0.724988376438611 0.179114775355422
MMP1610 0.660797359942571 0.846284338172065 -0.048541820476829 1.68563774093327 1.04455752505066 0.499621893312086 -0.169813114099783 -0.353203237394477 -4.72307049597083 -3.71643147684342 0.231858722786867 -0.86367374238108 -0.121725829463105 -0.00579646806967168 -0.110132893323762 0.00579646806967168 0.0347788084180301 -0.643407955733556 -0.504292722061436 0.150708169811464 -0.110132893323762 0.017389404209015 0.226062254717195 0.249248126995882 0.631815019594213 0.318805743831942 0.446328041364719 -0.712965572569616 0.0695576168360602 0.226062254717195 0.17389404209015 -0.31300927576227 -0.301416339622927 -0.237655190856539 -0.144911701741792 0.0927434891147469 -0.481106849782749 0.255044595065554
MMP1648 0.616292029758624 0.40187334944188 2.29532601472926 1.261238029406 0.642667841372509 0.626396751289566 0.49797620399487 0.000161676152014651 -5.12966779018378 -3.45912486536069 0.0623771056070356 0.803908375035775 0.571621471359302 0.428675684481473 -0.0448322345513363 -0.375394366706317 -0.0180298995117433 -0.0716345695909293 0.241059339204322 0.330400456002966 0.625226141438488 0.348268679362694 0.491214466240523 0.258927562564051 0.098113552326493 -0.000161676152014682 -0.0180298995117433 -0.00909578783187902 -0.831034062379397 -1.15266208285451 -0.911441067498176 -0.822099950699533 -0.536208376943875 -0.205646244788894 -0.303921473267402 -0.169909798069437 0.214257004164729 -0.223514468148623
MMP1711 0.70441176025038 1.14410827301813 0.725567677201616 0.94301927352197 1.06660200855895 0.788777209548154 0.589694195277221 0.288503483881432 -6.11416283405093 -1.77445032907234 -0.551863990514628 -0.453156610097378 0.00448669910987503 0.219848256383876 0.309582238581377 0.453156610097378 0.0583270884283754 -0.0314068937691251 -0.381369424339377 0.462130008317128 -0.130114274186376 -0.157034468845626 0.345475831460377 -0.174981265285126 0.309582238581377 0.255741849262877 0.183954663504876 -0.569810786954129 -0.480076804756628 -0.022433495549375 -0.219848256383876 -0.75825214956888 -0.78517234422813 -0.668518167371379 -0.273688645702377 -0.515970397635628 0.246768451043127 0.130114274186376
[+] Show/hide bicluster #139 motif PSSM #1. bicluster 139 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.058824 0 0.941176
2 0.235294 0.294118 0.117647 0.352941
3 0.411765 0.235294 0.058824 0.294118
4 0 0 1 0
5 0 0 1 0
6 0.294118 0 0.058824 0.647059
7 0 0 0.764706 0.235294
8 0.588235 0 0.411765 0
9 0.352941 0 0.117647 0.529412
10 0.235294 0 0 0.764706
11 0.058824 0 0 0.941176 [+] Show/hide bicluster #139 motif PSSM #2. bicluster 139 motif PSSM #2 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0 0 1
2 0 0 0.777778 0.222222
3 0 0.444444 0 0.555556
4 0.222222 0.333333 0.444444 0
5 0 0.777778 0.111111 0.111111
6 0.111111 0.111111 0.333333 0.444444
7 0 0 0 1
8 0 0.222222 0.333333 0.444444
9 0 0 0.222222 0.777778
10 0 0 0.111111 0.888889
11 0 0.111111 0.666667 0.222222
12 0.444444 0 0.333333 0.222222
13 0.444444 0.333333 0.222222 0
14 0.222222 0.222222 0.222222 0.333333
15 0.222222 0 0.444444 0.333333
16 0.222222 0.777778 0 0
17 0.595568 0.015543 0.237765 0.151124
18 0.484457 0.015543 0.126654 0.373346
19 0.262235 0.126654 0.237765 0.373346
20 0.040013 0.79332 0.126654 0.040013
21 0.777778 0.111111 0 0.111111
22 0.888889 0.111111 0 0
23 0.222222 0.666667 0.111111 0 |