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[+] Show/hide bicluster #137 rows and columns.
bicluster 137
Methanococcus maripaludis S2
21x37
[+] Show/hide bicluster #137 rows (genes).
bicluster 137 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #137 rows (short gene names).
bicluster 137 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #137 rows (long gene names).
bicluster 137 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #137 rows (NCBI RefSeq gene IDs).
bicluster 137 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #137 gene upstream sequences.
bicluster 137 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #137 columns (arrays; conditions).
bicluster 137 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #137 ratios.
bicluster 137 ratios
Methanococcus maripaludis S2
21x37
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0145 0.202099719446578 0.992278802275481 0.228069588513568 0.820826044653186 0.867007667816906 0.965731277092207 1.00195758749855 -0.0918635088393536 -0.284776877401996 -0.367454035357414 -0.496062947732509 -0.505249298616444 -0.321522280937737 -0.284776877401996 0 0.65223091275941 0.744094421598763 -0.13779526325903 0.0826771579554181 -0.0183727017678707 0.0643044561875474 -1.24934372021521 -0.514435649500379 -0.845144281322052 -0.9094487375096 -1.0656167025365 0.578740105687927 0.734908070714828 1.04724400076863 1.45144343966179 1.40551168524211 1.3503935799385 1.29527547463488 0.937007790161405 0.955380491929276 0.964566842813212 0
MMP0146 0.0315838903416414 0.461958361021861 0.361176769454248 0.399968179373188 0.39141124439782 0.774571488015678 0.497707307417748 -0.132652339434894 -0.675895253311126 -0.6253610287645 -0.701162365584439 -0.776963702404379 -0.751696590131065 -0.524292579671247 -0.372689906031369 0.549559691944561 0.751696590131065 -0.0947516710249241 -0.448491242851308 -0.0442174464782978 -0.0947516710249241 -0.499025467397934 -0.271621456938116 -0.296888569211429 0.562193248081217 -0.637994584901156 0.360056349894712 0.511659023534591 0.612727472627843 0.789597258541035 0.827497926951005 0.776963702404379 0.814864370814348 0.713795921721096 0.600093916491187 0.612727472627843 -0.14528589557155
MMP0187 0.0288889045208933 1.24941127236217 0.196129055015801 0.371941814593857 0.550653383147888 0.787341131221416 0.780963751474271 0.17333342712536 -0.548889185896971 -0.702963343341735 -0.625926264619353 -0.491111376855185 -0.356296489091017 -0.260000140688039 0.0962963484029775 0.828148596265606 0.558518820737269 -0.308148314889528 -0.500741011695483 -0.394815028452208 -0.327407584570123 -0.568148455577567 -0.616296629779056 -0.423703932973101 -0.356296489091017 -0.414074298132803 -0.00962963484029775 0.250370505847741 0.654815169140247 1.04000056275216 1.12666727631484 0.962963484029774 0.953333849189477 0.654815169140247 0.587407725258162 0.635555899459651 -0.414074298132803
MMP0404 0.435349017255303 2.73672266121285 1.0686656459472 1.51337976173637 1.8936504001877 1.87870384661441 1.63436019539472 0.06836058948637 0.075556441011251 -0.298627838282563 -0.34180294743185 -0.334607095906969 -0.334607095906969 -0.320215392857207 -0.176298362359586 0.888687663322809 0.190690065409348 -0.34180294743185 -0.420957314205541 -0.701595523675902 -0.600853602327567 -0.780749890449594 -0.744770632825188 -0.953450327046738 -0.931862772472095 -0.9678420300965 0.241061026083515 0.888687663322809 1.29885120024103 1.42837652768889 1.29885120024103 1.02540884229555 0.68720382062614 0.363390502006493 0.356194650481612 0.47852412640459 -0.075556441011251
MMP0417 0.603116857681455 1.09985665936332 0.560670150753467 1.20430491453975 1.03406921651518 0.93318088815576 0.664904807955715 0.0496684471031787 0.0543987753987194 -0.17265698278724 -0.338218473131169 -0.338218473131169 -0.319297159949006 -0.253072563811434 -0.201038952560485 0.877475898822823 0.357139786313332 -0.437555367337526 -0.465937337110771 -0.522701276657261 -0.565274231317129 -1.01938574768905 -1.1754865814419 -1.18021690973744 -1.13764395507757 -0.934239838369313 0.451746352224149 0.986273449620262 1.22752019269284 1.26063249076163 0.97208246473364 0.754487363138762 0.726105393365517 0.536892261543884 0.707184080183353 1.20859887951068 0.201038952560485
MMP0418 0.282659922118684 0.716773034425254 0.581411082351637 0.984842777463053 0.929808076358513 0.75112093460541 0.766733616505481 -0.00777963088400048 -0.0492709955986697 -0.282659922118684 -0.43306611920936 -0.324151286833353 -0.396761175084024 -0.453811801566694 -0.241168557404015 0.676827886908041 0.0855759397240052 -0.609404419246704 -0.697573569265376 -0.682014307497375 -0.614590839836038 -0.713132831033377 -1.0243180663934 -0.81686124282005 -0.71831925162271 -0.806488401641383 0.43306611920936 1.00357238403606 1.25770699291341 1.27326625468141 1.0554365899294 0.920589654606723 0.863539028124053 0.671641466318708 0.733878513390711 1.21102920760941 0.111508042670673
MMP0606 -0.235136602823926 0.948363544452058 0.406366696424446 0.526824482377946 0.672182781092767 0.538705943316375 0.42014413097333 -0.226738867008786 0.00839773581514023 0.109170565596823 0 0.0503864148908414 -0.0083977358151402 0 0.0251932074454207 0.302318489345048 -0.0335909432605609 -0.470273205647852 -0.789387166623181 -0.697012072656638 -0.461875469832712 -1.63755848395234 -0.428284526572151 -0.73900075173234 -0.957341882925986 -0.713807544286919 0.688614336841498 1.14209207085907 1.28485357971645 1.36043320205272 1.29325131553159 1.20087622156505 1.35203546623758 0.974137354556266 0.864966788959443 0.688614336841498 -0.109170565596823
MMP0607 -0.0707196110330289 0.851048680065781 0.361968249666944 0.371604198655351 0.407682984402645 0.344601136026201 0.145271450790411 0.0409429327033325 -0.0111662543736361 0.0558312718681807 0.0111662543736361 0.0558312718681807 0.0111662543736361 -0.0186104239560602 -0.0483871022857566 0.130272967692422 -0.0186104239560602 -0.353598055165144 -0.621588160132411 -0.323821376835448 -0.301488868088176 -1.20967755714391 -0.480148938066354 -0.621588160132411 -0.614143990549987 -0.375930563912417 0.606699820967563 0.725806534286349 0.792804060528166 0.897022434682103 0.889578265099679 0.897022434682103 1.07568250466028 0.882134095517255 0.785359890945742 0.651364838462108 -0.0409429327033325
MMP0881 -0.296344779003797 0.602776498490631 0.453068137834895 0.156895357340831 0.523137492256272 1.1396504872285 -0.156470355823045 0.167030693620322 0.0592689558007595 -0.00538808689097814 -0.102373650928584 -0.123925998492497 -0.0269404344548907 -0.037716608236847 0.00538808689097814 -0.199359214966191 -0.123925998492497 -0.00538808689097814 -0.0915974771466282 -0.447211211951185 -0.479539733297054 -0.134702172274453 -0.845929641883567 -1.00757224861291 -0.705839382718136 -0.727391730282048 0.40410651682336 0.457987385733142 0.544196775988791 0.738167904064004 0.942915205921173 0.845929641883567 1.10455781265052 1.00757224861291 0.619629992462485 0.845929641883567 0.274792431439885
MMP1081 -0.762254958412278 1.09497968681809 0.529953430227973 0.4313767286138 0.74252666585319 0.390807909844626 -0.149436498949403 0.591509847727928 -0.262215705693824 -0.128058833013263 -0.164647071017052 -0.0670784363402805 -0.189039229686245 -0.176843150351649 -0.140254912347859 -0.0182941190018947 -0.164647071017052 -0.518333371720349 -0.579313768393331 -0.713470641073892 -0.786647117081471 -0.579313768393331 -0.640294165066314 -0.48174513371656 -0.554921609724139 -0.872019672423646 0.506137292385753 0.396372578374385 0.445156895712771 0.713470641073892 0.884215751758243 0.811039275750664 1.15252949711936 1.0305687037734 1.10374517978098 0.945196148431225 0.0182941190018947
MMP1083 -0.543703261043468 1.15435465504679 0.570205092659036 0.364057584775467 0.440827069880284 0.260788986571388 -0.277896411185279 0.8716512597681 0.00863021049275341 -0.120822946898549 -0.0604114734492743 -0.112192736405795 -0.327947998724632 -0.379729261681153 -0.483291787594194 0.64726578695651 0.00863021049275341 0.474661577101441 -0.0431510524637674 0 0.302057367246371 -2.07125051826083 -1.07877631159418 -0.897541891246361 -1.06151589060868 -1.10466694307244 0.189864630840576 0.405619893159413 0.405619893159413 1.0011044171594 1.01836483814491 0.983843996173895 1.23412010046375 0.759458523362305 0.750828312869551 0.431510524637673 -0.64726578695651
MMP1105 0.256512195228977 1.71474862642277 0.907218672811449 1.13090917875615 1.188460615598 1.07347839082213 0.899255580366815 0.296592225733504 0.200400152522638 -0.112224085412677 -0.0240480183027166 -0.0881760671099608 -0.200400152522638 -0.144288109816299 0.0240480183027165 0.76953658568693 0.513024390457953 -0.0320640244036221 -0.216432164724449 -0.0320640244036221 -0.0240480183027166 -0.633264481971536 -0.649296494173347 -0.472944359953426 -0.392784298944371 -0.705408536879686 0.553104420962481 0.897792683301418 1.31462500054851 1.69939329339197 1.53907317137386 1.36272103715394 1.29859298834669 0.921840701604135 0.825648628393269 0.937872713805946 -0.120240091513583
MMP1106 -0.00604672640767694 1.52071162592157 0.51739202707123 1.37909649528589 1.10405731100816 0.255640645008901 0.702875093570758 0.0907008961151539 -0.090700896115154 -0.308383046791524 -0.344663405237585 -0.417224122129708 -0.973522951635986 -0.574439008729309 -0.489784839021831 0.997709857266694 0.320476499606877 0.00604672640767689 -0.320476499606877 0.126981254561216 0.126981254561216 -0.852588423482447 -0.61071936717537 -0.961429498820632 -0.538158650283247 -1.11864438542023 0.320476499606877 0.997709857266694 1.25167236638912 1.72331702618793 1.84425155434146 1.68703666774186 1.71122357337257 1.21539200794306 0.792121159405678 0.913055687559217 -0.405130669314354
MMP1122 -0.54930735163902 1.0390093532414 0.37869846542875 0.521635034839912 0.44400085890483 0.425503185216326 0.631079599508411 0.307239705154028 -0.046551470477883 -0.316549999249605 -0.456204410683254 -0.52137646935229 -0.456204410683254 -0.484135292969984 -0.437583822492101 0.297929411058451 0.0651720586690362 -0.400342646109794 -0.754133821741705 -0.456204410683254 -0.614479410308056 -0.325860293345181 -0.567927939830173 -0.512066175256713 -0.446894116587677 -0.772754409932858 0.418963234300947 0.586548528021326 0.912408821366508 0.958960291844391 0.772754409932858 0.744823527646129 0.865857350888624 0.679651468977092 0.688961763072669 0.679651468977092 -0.148964705529226
MMP1146 0.146411074669572 1.48815521878384 0.145316146532062 0.460943752432589 0.731430920668517 0.670153673058701 0.621103436272622 0.467570851364116 -0.311713900909411 -0.316436838801977 -0.40144972086818 -0.226701018843208 -0.151134012562138 0.00944587578513366 0.217255143058074 0.807622379628928 0.344774466157378 -0.434510286116148 -0.528969043967485 -0.510077292397217 -0.613981926033688 -0.911527013265398 -0.798176503843794 -0.916249951157965 -0.854851758554596 -1.0957215910755 0.552583733430319 0.77456181438096 1.13822803210861 1.29408498256331 1.16184272157144 0.996539895331601 1.02960046057957 0.86429763433973 0.854851758554596 0.69899480809989 0.0802899441736361
MMP1206 0.943422532916846 0.571815839574134 0.528351723596068 0.455104811605583 0.614390916816286 0.794816387525412 0.899080873191153 0.720282594696514 -0.395417096405148 -0.185403036903658 -0.19196597626308 -0.0771145374732031 -0.00492220451956616 -0.0180480832384093 -0.0705515981137815 -0.487298247437049 -0.162432749145683 -0.0344554316369631 -0.323224763451511 -0.0377369013166739 -0.0278924922775416 0.700593776618249 -0.940141063237136 -0.900763427080606 -0.972955760034243 -0.78591198829073 0.510268535195025 0.503705595835603 0.569334989429819 0.631682913344323 0.739971412774779 0.87451166964292 1.39626534871693 1.37985800031838 1.58659059014016 0.986081638753086 -0.00820367419927693
MMP1316 0.0538475933160294 1.63705205959832 0.65387724887181 0.714609745211473 0.917231504320688 0.883299113127353 0.911720188785434 -0.118464705295265 -0.0107695186632059 -0.269237966580147 -0.269237966580147 -0.0682069515336373 -0.125644384404069 -0.111285026186461 -0.0251288768808137 0.656940638455559 0.326675399450579 0.0897459888600491 -0.369753474103402 -0.118464705295265 -0.254878608362539 -1.36054919111834 -1.56875988527366 -1.31029143735672 -1.37490854933595 -1.21695560894227 0.599503205585128 0.793354541522834 1.15233849696303 1.19541657161585 1.07336202676619 0.865151332610873 0.965666840134128 0.714378071325991 0.707198392217187 0.685659354890775 -0.175902138165696
MMP1440 -0.338059133310685 1.99792347142015 -0.160224431298091 0.515690732540723 0.683722867515993 1.25905542321032 0.0101743534655634 0.589638023216312 -0.448124897644397 -0.400953855787092 -0.322335452691584 -0.495295939501702 -0.227993368976974 -0.165098646500567 -0.00786184030955083 -0.338059133310685 0.00786184030955083 -0.180822327119669 -0.463848578263499 -0.259440730215177 0.102203924024161 0.0707565627859574 -0.526743300739905 -0.4795722588826 -0.275164410834279 -0.180822327119669 -0.306611772072482 -0.00786184030955083 0.4795722588826 1.07707212240846 1.32865101231409 1.25003260921858 0.888387954979243 0.794045871264633 0.66825642631182 0.904111635598344 0.180822327119669
MMP1496 -0.132680823308851 1.38168386188037 -0.0274905329097261 0.567037277802933 0.43893051285325 0.751209238665221 0.583309499678759 0.280103960318685 -0.584778443472343 -0.584778443472343 -0.742029789616166 -0.42752709732852 -0.250619332916718 -0.152337241576829 -0.0638833593709282 -0.00491410456699448 0.0245705228349724 -0.437355306462509 -0.820655462688078 -0.506152770400431 -0.545465606936387 -0.909109344893979 -0.859968299224034 -0.280103960318685 -0.810827253554089 -1.16464278237769 0.14250903244284 0.309588587720652 0.742029789616167 1.18429920064567 1.2432684554496 1.26292487371758 1.2432684554496 0.89928113575999 0.830483671822067 0.820655462688078 -0.565122025204365
MMP1532 -0.0745334961785736 2.40725720858619 -0.127240282268846 0.807512077100683 1.34375203004314 1.3515186267454 0.900020805085951 0.40706755605221 -0.0630668044587931 -0.246533871975282 -0.269467255414843 -0.0286667292994514 0.0401334210192319 0.361200789173087 0.670801465607162 0.636401390447821 0.62493469872804 0.0860001878983541 -0.349734097453307 0.0286667292994514 -0.0860001878983542 -1.23266935987641 -1.17533590127751 -1.02626890892036 -0.83133514968409 -0.716668232486285 -0.131866954777476 0.372667480892868 0.900135300002773 1.10653575095882 0.808401766244529 0.269467255414843 0.20066710509616 0.303867330574185 0.693734849046723 0.349734097453307 -0.131866954777476
MMP1656 -0.437384085608606 2.24615728404023 0.735428314456627 0.948979296786184 0.741380320975468 0.831923056739798 -0.44090578243467 0.545232216306619 -0.353502206176819 -0.641097221371519 -0.653080347004631 -0.521265965040394 -0.689029723903969 -0.605147844472181 -0.461350336874831 1.50388226695562 0.892742859666881 0.353502206176819 0.0539240653490063 0.0299578140827813 -0.0419409397158937 -0.509282839407281 -1.45594976442317 -0.593164718839069 -0.497299713774169 -0.437384085608606 0.521265965040394 1.10843912106291 1.92329166411456 1.98320729228012 1.74354477961787 1.16835474922847 0.724979100803306 0.281603452378144 0.0539240653490063 -0.185738447313244 -0.509282839407281
[+] Show/hide bicluster #137 motif PSSM #1. bicluster 137 motif PSSM #1 Methanococcus maripaludis S2 22x4
POSITION A C G T
1 0 0 1 0
2 0 0 0 1
3 0 0 0 1
4 0 1 0 0
5 0 0 1 0
6 1 0 0 0
7 0 0 0 1
8 0 0.333333 0 0.666667
9 0 0.333333 0.666667 0
10 0.333333 0.333333 0 0.333333
11 0 0.333333 0.666667 0
12 0.333333 0 0.333333 0.333333
13 0.333333 0 0.333333 0.333333
14 0 0 0 1
15 0 1 0 0
16 0 0 0 1
17 0 0.333333 0.333333 0.333333
18 0 0.333333 0.666667 0
19 0.333333 0 0.333333 0.333333
20 0 0.666667 0 0.333333
21 0 0.333333 0 0.666667
22 0 1 0 0 [+] Show/hide bicluster #137 motif PSSM #2. bicluster 137 motif PSSM #2 Methanococcus maripaludis S2 20x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 1 0 0 0
4 0 0.857143 0 0.142857
5 0.428571 0.428571 0 0.142857
6 1 0 0 0
7 0 0 0.285714 0.714286
8 0 0.142857 0.857143 0
9 0 0.142857 0.428571 0.428571
10 0 0 0 1
11 0.142857 0 0 0.857143
12 0.142857 0 0.142857 0.714286
13 0.714286 0 0 0.285714
14 0 0.142857 0.142857 0.714286
15 0.285714 0 0 0.714286
16 0.714286 0 0 0.285714
17 0 0 0.142857 0.857143
18 0.571429 0.142857 0.142857 0.142857
19 0.428571 0.571429 0 0
20 0 0.142857 0.714286 0.142857 |