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bicluster 136
Methanococcus maripaludis S2
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bicluster 136 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #136 rows (short gene names).
bicluster 136 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #136 rows (long gene names).
bicluster 136 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #136 rows (NCBI RefSeq gene IDs).
bicluster 136 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #136 gene upstream sequences.
bicluster 136 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #136 columns (arrays; conditions).
bicluster 136 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #136 ratios.
bicluster 136 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0075 0.189943710721195 0.363412445659399 0.34489742919857 0.053694192640528 0.456532132761939 0.044981239461343 -0.146703721435788 1.07814687709448 -0.189943710721195 -0.642190641009755 -0.0542696316346271 0.633145702403983 0.461291868894331 1.04016793966369 0.0090449386057712 -0.189943710721195 -1.03112300105792 -1.75471808951961 -1.12157238711563 -1.32056103644259 -0.886403983365577 0.171853833509653 -1.27533634341374 -0.397977298653932 -1.11252744850986 -2.92151516966409 -3.12954875759683 -2.40595366913514 -2.3245492216832 -0.144719017692339 0.524606439134729 0.470336807500102 0.506516561923187 0.253258280961593 0.958763492211746
MMP0087 0.798344665254235 0.608589782472324 2.02221285267288 1.80767822122282 1.71506490477435 1.85808798808065 1.71760492595005 -0.250330329245809 -0.421889457248173 0.564682812009093 1.31759322802122 0.81132587932341 -0.0713966773804601 -0.292077316556428 0.227171246210555 0.512757955732395 -1.23970594360617 -1.8368417907882 -1.1747998732603 -0.941138020015155 -1.55125508126636 0.49977674166322 1.31759322802122 0.694494952700839 -0.694494952700839 -1.20076230139865 -1.10989380291442 -0.331020958763951 -1.84982300485737 0.279096102487253 0.175246389933857 -0.305058530625602 0.175246389933857 0.577664026078268 0.81132587932341
MMP0088 0.926834252548468 0.76539869117923 1.54357565250334 1.88995931183998 1.9057126442756 2.07539318444562 1.49460745553406 -2.7468365941857 0.725074415259006 1.00249419153202 1.1790340491603 1.01510418136261 -0.13240489322121 -0.384604689833038 0.636804486444866 0.422434659324812 -1.04032416102379 -1.22947400848266 -0.800734354242554 -0.346774720341264 -1.24208399831325 0.561144547461317 0.283724771188307 -0.296334761018898 -0.750294394920188 -0.523314577969543 -1.21686401865207 -1.30513394746621 -2.0491233474711 0.472874618647178 0.0441349644070699 -0.245894801696532 -0.346774720341264 0.409824669494221 0.598974516953092
MMP0164 1.21314160528239 -0.200027120148326 1.67036330410624 1.45628247203066 1.18882127504289 0.715430140023019 0.677392634486791 -0.305349456906202 0.432696021140109 0.199093261260786 0.560115708347013 0.459241789308214 -0.140692571290956 -0.512333325644424 0.841500850928924 -1.30870637068757 -1.21314160528239 -1.44143521152809 -0.931756462700481 -0.411459406605625 -1.87147665585139 0.947683923601344 -0.0663644204202622 0.225639029428891 0.963611384502207 0.783100160959093 0.204402414894407 -0.453932635674593 -1.32463383158843 0.119455956756472 -0.358367870269416 -0.613207244683222 -0.246875643963375 0.634443859217706 1.02201207447204
MMP0429 0.137516016117111 1.10428309574933 1.16441688094701 1.16942802247579 1.47859410652616 0.407515541176251 -1.36555958907117 -0.398843636446205 -0.00723768505879531 0.933661372584594 1.5416269175234 1.3823978462299 0.933661372584594 0.745481561055917 1.20869340481882 0.731006190938326 -1.00603822317255 -1.91798654058076 -1.49820080717063 -1.20869340481882 -0.557301749527239 0.58625248976242 -0.615203229997601 -0.412548048351332 -0.817858411643869 -0.180942126469882 -0.687580080585554 -0.296745087410607 -1.03498896340773 0.0506637954115672 -0.484924898939285 -0.60072785988001 -0.644153970232782 0.60072785988001 0.528351009292057
MMP0644 1.58575422278988 1.18316418685821 1.42547698030557 1.3092209093476 1.56800894821557 1.53708618515553 1.55803931422354 0.0465414373757403 -0.0252598017789539 0.676401358747543 0.698854515884391 0.0252598017789539 -1.10862463363186 -0.957065822958141 0.0701661160526497 -0.406963473105368 -0.861639905126538 -1.05810503007396 -0.833573458705478 -0.844800037273902 -1.14791765862135 0.715694383737027 0.143138876747405 -0.586588730200151 -1.04687845150553 -1.37244922998983 -1.5464611978004 -1.52962132994776 -1.61943395849515 0.586588730200151 0.968292401526565 1.00758542651605 1.28824989072665 1.44542199068458 1.35560936213719
MMP0645 1.89584987000208 1.41304936738339 1.53396910167099 1.49472249082824 1.84802568935073 1.79831889086072 1.80007620469829 0.739246110082672 -0.105633863724456 0.817272524605002 0.661601567537382 0.0611564474194218 -1.01742089797766 -0.639362859384866 0.277983851906463 -0.355819330440273 -1.01742089797766 -1.11193540762585 -0.772795108299968 -0.795033816452485 -0.956264450558234 1.02298057501578 -0.2279467585633 -0.706078983842417 -1.0452192831683 -0.850630586833778 -1.00074186686327 -1.14529346985463 -1.32320313507477 0.511490287507892 0.967383804634492 0.917346711291329 1.1397337928165 1.43439667583735 1.37879990545606
MMP0646 1.25830755371765 0.659958790723191 1.1590768139975 1.12184953217867 1.181288793435 1.0981271370218 0.994648921616706 -0.216525982733885 0.260712667502093 0.904131854469522 0.744752789807865 0.0383690340852137 -1.37833376290729 -1.48458647268173 0.549956155221396 -1.43342776056811 -1.38620433400169 -1.23076055488724 -1.05760799081038 -0.756558646449469 -1.47868354436093 1.08121970409359 -0.0678836756892241 -0.233165668671683 -0.274486166917298 -0.416156446616548 -0.754591003675869 -1.1127019884712 -1.34291619298248 0.396480018880541 0.516506228070184 0.508635656975781 0.540117941353392 0.788040930827081 0.874617212865511
MMP0874 1.46448830563881 0.156317555685337 1.60818828367525 1.45658222734155 1.44580958584747 1.22143673662583 1.08410271488302 -1.24992383322364 0.240472398824739 0.19716457344398 0.431938574192303 0.115107641143595 -1.23655238258219 -1.38471073256899 0.384072030350412 -1.15677480951237 -1.33912354795767 -1.41434240256635 -1.03368941106179 -0.85817875030819 -1.1681716056652 1.07015915875085 0.30657381651116 0.0604030196100055 -0.260986631899835 -0.333926127277954 -0.627963468020999 -0.899207216458382 -1.08839403259538 0.0398887865349093 -0.0421681457654754 0.00341903884584937 0.153856748063221 0.653036419557228 1.01545453721726
MMP0875 2.33749324297123 1.13841401228319 1.5852119294383 1.68906541463021 1.92400689542716 1.93654295322967 1.87348278856063 -1.41654537514491 0.291215935586117 0.51448148620214 0.675620970559791 0.351400562273914 -0.609612025160271 -0.663972333136347 0.421292386814582 -0.500891409208121 -0.792107344794238 -0.625143541724864 -0.654265135283476 -0.551368838043048 -0.500891409208121 1.07944040123921 -0.493125650925825 -0.518364365343288 -0.471769815649509 -0.500891409208121 -0.522247244484436 -0.43876534294975 -0.460121178226065 0.959071147863612 1.34735906197843 1.32988610584327 1.33765186412556 1.60557052486479 1.80359736106335
MMP0887 -0.0102350800955944 3.01703410812787 1.42997695921094 1.17717548580392 1.26236696004292 1.47603889320299 0.333733629299314 -2.407953048166 1.09515357022861 1.08491849013301 0.818806407647557 0.112585881051539 -0.75739592707399 -1.13609389061099 0.747160846978396 -0.266112082485456 -0.890451968316718 -1.14632897070658 -0.501518924684129 -0.470813684397345 -0.767631007169585 0.368462883441401 -0.204701601911889 0.0102350800955945 0.0716455606691613 -0.317287482963428 -0.307052402867834 -0.358227803345806 -1.17703421099336 0.675515286309235 0.214936682007484 0.153526201433917 0.358227803345806 0.839276567838746 0.829041487743152
MMP0888 0.805579550921847 0.887402767283664 0.986015250152506 1.01611622299725 1.02709671731677 0.835637574546339 0.70459235473905 -0.843657518948829 0.740795181442118 0.549258784719441 0.0507008108971791 0.676010811962389 -0.433773604342533 -0.690094370544939 0.909797884432715 -1.33230464190921 -0.932331578164795 -0.853463650102516 -0.292938018517035 0.0225336937320797 -0.766145586890708 0.735161758009098 -0.366172523146294 -0.399973063744413 -0.230970360753816 -0.442223739492063 -0.763328875174198 -1.13795153347002 -1.54919144408047 0.647843694797289 0.445040451208573 0.368989234862804 0.808396262638357 1.21963617324881 1.10696770458841
MMP0889 0.832673827323025 0.896861813112474 0.905273786136768 0.915215208801842 0.948055892777694 0.739455958482734 0.647136680188036 -1.01435542366569 0.482668557533007 0.482668557533007 0.55887938240664 0.522185281541558 -0.55887938240664 -0.829851204179557 0.801624972744878 -1.56937846776814 -1.10929089538288 -0.951223999348676 -0.361295762363889 -0.0846786943040364 -0.954046622492143 0.640735453567209 -0.508072165824218 -0.468555441815668 -0.338714777216146 -0.493959050106879 -0.75928562559286 -1.19679221283038 -1.67946077036339 0.516540035254622 0.352827892933485 0.27943969120332 0.700010539580034 1.09517777966554 1.0189669547919
MMP0917 0.43401444254348 1.02892161955698 0.765243414731601 0.456728026148011 0.144649428310962 -0.14501059737491 -0.569330597410801 -0.437194555139678 -0.75952527445109 0.266327044288045 0.147959469048914 0.0789117168260874 -0.463606336353263 -0.641157699211959 -0.552382017782611 -0.256463079684784 0.256463079684784 -0.443878407146741 -0.463606336353263 -0.75952527445109 -0.128231539842392 0.493198230163046 0.414286513336958 0.32551083190761 -1.17381178778805 -1.3119072922337 -1.50918658429892 -1.33163522144022 -0.680613557625003 0.621429770005437 0.720069416038047 0.453742371750002 0.710205451434786 0.739797345244568 1.18367575239131
MMP0965 1.24800994098329 1.32845946274256 1.8018382169553 1.66045923857028 1.6894150118048 1.51097717446391 1.51573702790778 0.823065033274682 0.58918116369196 1.15765628009762 0.91294844853227 0.73600586263117 -0.212707576668343 -0.336943860386137 0.935536863753687 -0.958125278975104 -0.882830561570381 -0.950595807234632 -0.547769069119362 -0.468709615844403 -0.344473332126609 0.822594787646602 -0.107294972301731 -0.55906327673007 -0.852712674608491 -0.980713694196521 -1.24048046924282 -1.40236411166297 -1.47012935732722 0.13741285926362 0.0395297266374798 0.08847129295055 0.623063786524085 1.4362467344951 1.50401198015935
MMP1035 -0.091067544213742 -0.158237009909182 1.30348079615036 1.07576131420376 0.888980166090257 0.726688926251392 0.797234435803585 1.3022014671469 0.333914328783721 0.722469184095687 0.516049417211205 -0.103209883442241 0.625330470267695 0.941031290208668 1.62100228700461 -0.564618774125201 -0.928888950980169 -1.45100953780562 -0.503907077982706 -0.297487311098224 -1.20816275323564 -0.710326844867188 -0.418910703383213 -1.08673936095065 -1.91241842848858 -2.05812649923057 -1.81527971466059 -1.02602766480816 -0.698184505638689 0.843892576380676 0.928888950980169 0.953173629437167 1.34172848474913 1.17173573555015 1.36601316320613
MMP1036 -0.239887815326442 -1.23166927658462 1.02441256395907 0.928855729704944 0.785604433480334 0.713726892004364 0.449895963090773 1.15271735417409 1.23291179504985 0.507669562667586 0.206415096908799 0.0502090776264645 0.541142281085229 0.608087717920515 1.04323305734987 -0.686190727561682 -1.07670577576752 -1.45606325116747 -0.608087717920515 -0.719663445979325 -1.06554820296164 -0.853554319649897 -0.172942378491156 -0.942814902096945 -2.14783276513209 -1.64574198886745 -1.61226927044981 -1.15480878540868 -0.920499756485183 0.842396746844016 0.77545131000873 0.496511989861705 0.820081601232254 0.931657329291064 1.34448752310866
MMP1175 0.930429167633973 0.913890096604185 1.1331161567674 1.08025761761393 1.06004080493426 0.962396409914033 0.746820607595761 -3.66304179246098 0.524678102049233 0.603962793025562 0.324134471932637 -0.132918452519139 -1.01437766396185 -1.23824032083619 0.557324739510074 -0.669256067947244 -0.925765362282424 -0.818497839196804 -0.552660934158525 -0.324134471932637 -0.422074384315161 0.916437751579327 -0.440729605721356 -0.492031464588392 -0.520014296697684 0.0209871240819693 0.00699570802732311 -0.300815445174894 -0.753204564275121 0.184220311386175 0.0722889829490054 0.137582257870688 0.417410578963612 0.799842617790609 0.743876953572024
MMP1176 0.533359693323085 0.678309530985829 0.503676381253419 0.667678036181003 0.686418756989586 0.61311026182562 0.614032381272977 -0.576396686987209 0.0918964336468829 0.0756794159444917 0.169377740447196 0.104509669637631 -1.62530555195075 -1.85234379978423 0.207217448419442 -1.68476795019285 -1.34240868758682 -1.06131371407871 -0.73156768746342 -0.576605073862794 -1.70639064046271 0.432453805397096 -0.335151699182749 -0.632463690393252 -0.967615389576001 -1.19285174655366 -1.42889944866624 -1.68837173190449 -1.87937216262154 0.180189085582123 0.490114312783375 0.448670823099487 0.479302967648448 0.504529439629945 0.672105289221319
MMP1177 0.515237433554902 0.675331269617468 0.446405032269779 0.670686085944726 0.680632553673957 0.590327017722099 0.585681834049358 -0.249454100505784 0.131642728370203 0.0967704824443218 0.190925546444202 0.0723599102962045 -1.63114930318312 -1.85607528940505 0.290311447332965 -1.547455912961 -1.40273609236859 -1.11329645118377 -0.734932582887957 -0.605905272962195 -1.73576604096076 0.393184572814316 -0.272875324370024 -0.602418048369606 -0.944166058443247 -1.26324710866506 -1.51432727933141 -1.73227881636817 -1.96592286407158 0.211848893999731 0.494314085999373 0.455954615480903 0.497801310591961 0.527442719628961 0.673906152517664
MMP1178 0.7504837488055 0.564290874131803 0.766166733271608 0.845677604249535 0.857325135392358 0.758431015444582 0.65760296896022 -0.724717042757503 0.25405480990692 0.183970724415356 0.616155918280002 0.639517280110523 -0.943214983907301 -1.41336239074654 0.452626385466352 -1.48052630600929 -0.829328344983509 -0.741723238119054 -0.239453958762844 0.0642437450339338 -2.02951830902655 0.563592854161329 0.125567319839053 0.0321218725169669 -0.125567319839052 -0.560672683932513 -1.05126128237346 -1.69077856248399 -2.32153533190806 -0.0642437450339338 0 -0.102205958008531 0.0554832343474883 0.283256512195072 0.435105364093461
MMP1181 0.367685387584307 0.157678840683875 0.250442843698569 0.514372264851935 0.36613432428561 0.345051594338086 0.529920778188235 0.217237544031218 -0.245123591722871 0.00875441399010252 0.499001597435845 -0.0787897259109229 -0.612808979307178 -0.700353119208203 0.560282495366563 -2.57379771309015 -2.81016689082292 -2.49500798717922 -1.74212838403041 -1.05052967881231 -2.3987094332881 0.490247183445742 -0.166333865811948 0.131316209851538 0.236369177732769 -1.94347990580276 -1.92597107782256 -1.93472549181266 -2.4249726752584 0.0875441399010254 0.367685387584307 0.367685387584307 0.315158903643692 0.122561795861436 0.51651042541605
MMP1182 0.156432530421136 0.112121144919983 0.527926353630667 0.599817175819288 0.412712677896066 0.45289619422857 0.361149066771872 0.0312832116729534 0.213790118283218 0.495363731424352 0.474506426747231 0.192932813606097 -0.865575398757793 -1.14714901189893 0.521435362270753 -1.59036673628775 -1.3661507110087 -1.30879312314661 -0.698716961340825 -0.302428172475526 -1.87194034942888 0.396291534208027 -0.38585739118401 -0.291999520136966 -0.187712996751361 0.234647422960339 -0.125141082719998 -0.38064306501473 -0.886432703434914 0.213790118283218 0.192932813606097 0.0625746593740911 0.0782176378819319 0.109503594897613 0.119932247236174
MMP1183 0.00544681190571973 0.226635944499704 0.450612646490798 0.477011072477256 0.546942303811147 0.394290541597131 0.385436411142046 -0.592125166357297 0.0381276833400381 0.130723485737273 0.179744792888751 0 -1.00221339065243 -1.5468945812244 0.0708085547743565 -1.25821355022126 -1.32357529308989 -1.22008586688122 -0.664511052497807 -0.245106535757388 -1.77021386935891 0.19608522860591 0.305021466720305 0.0326808714343184 -0.272340595285986 -0.343149150060343 -0.8006813501408 -1.09480919304967 -1.54144776931868 0.0544681190571973 0.152510733360152 -0.0381276833400381 0.272340595285986 0.266893783380267 0.119829861925834
MMP1646 1.20704015220493 0.528867225165051 -0.397865657953906 0.0613670476111916 0.189900530326152 -0.0140737126014962 0.209019079147175 1.00192212910146 -0.552370783900854 0.159976082912708 0.305878453223919 0.726420579415058 -0.046003733997238 0.580518209103847 -0.251983550907184 -0.217653581422193 -1.11023278803196 -1.54793989896559 -1.38487254391188 -1.01582537194823 -1.1359802651457 -0.0545862263684857 -1.29904762019941 -1.72817223876179 -1.83974463958801 -1.5307749142231 -1.47069746762436 -1.35912506679814 -1.52219242185185 1.13838021323495 1.46451492334236 1.28428258354616 0.992477842923738 1.00106033529499 1.55892233942609
MMP1699 -0.917059961322673 1.80877123742996 0.357816031575108 0.0874107427569965 0.785928810729268 0.735943750211556 0.0176399329613661 0.59269953354491 -0.640315337211501 -0.440444219797878 -0.0176399329613661 -1.40136305351722 -1.37830100150796 -1.10155637739679 -0.763312947927578 0.820281290041902 0.535849315260976 0.0746082750756909 0.297541444498579 -0.0253272836311209 -0.448131570467633 -0.955496714671447 -0.409694817118859 -1.87029144437226 -1.70885708030741 -1.32448954681967 -1.2014919361036 -1.15536783208507 -1.41673775485673 0.282166743159069 0.343665548517107 0.482037860572693 0.689596328656072 1.12777531683209 0.359040249856617
Unanno_9 0.80297411900345 0.125855597164526 0.458757807342434 0.358256706424491 0.529582176002445 0.306068711202193 0.282204312212646 0.0273842002843537 0.265614848525314 0.167541673685198 0.267658039667817 0.140980188832667 -1.48539996059926 -1.7714467205496 0.400465463930474 -1.82252649911216 -1.48539996059926 -1.39754274147165 -0.884701764703547 -0.623173298463237 -1.71628055970203 0.968472601546146 0.608870960465721 0.392292699360464 0.404551846215479 -0.0306478671375363 -0.384119934790455 -0.927608778696098 -1.72241013312954 -0.110332321695131 -0.249269319385295 -0.173671247112706 0.00612957342750726 0.306478671375363 0.43928609563802
[+] Show/hide bicluster #136 motif PSSM #1. bicluster 136 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0.444444 0 0.555556
2 0.444444 0 0.444444 0.111111
3 0.222222 0 0.666667 0.111111
4 0.333333 0.111111 0 0.555556
5 0.888889 0 0.111111 0
6 0.666667 0.111111 0 0.222222
7 0.444444 0 0.333333 0.222222
8 0 0.111111 0.888889 0
9 0 0 0 1
10 0.444444 0 0 0.555556
11 0.333333 0.222222 0.222222 0.222222
12 0.111111 0.888889 0 0
13 0.111111 0.777778 0.111111 0
14 0.333333 0 0.666667 0
15 0 0.888889 0 0.111111 [+] Show/hide bicluster #136 motif PSSM #2. bicluster 136 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 1 0 0 0
3 0 0 1 0
4 0 0 1 0
5 0 1 0 0
6 0.5 0 0.5 0
7 0 1 0 0
8 0 0 1 0 |