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[+] Show/hide bicluster #131 rows and columns.
bicluster 131
Methanococcus maripaludis S2
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[+] Show/hide bicluster #131 rows (genes).
bicluster 131 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #131 rows (short gene names).
bicluster 131 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #131 rows (long gene names).
bicluster 131 long names
Methanococcus maripaludis S2
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long_name
[+] Show/hide bicluster #131 rows (NCBI RefSeq gene IDs).
bicluster 131 NCBI RefSeq IDs
Methanococcus maripaludis S2
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[+] Show/hide bicluster #131 gene upstream sequences.
bicluster 131 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #131 columns (arrays; conditions).
bicluster 131 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #131 ratios.
bicluster 131 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0029 -1.20658880931306 -1.44082501157248 -0.930283855943447 -1.50602353631657 -0.530332534987432 0.70830309333832 0.128012808211544 0.988694667676393 0.394933131716466 -0.0299604444750422 -0.373143717552799 -1.15756262744481 -0.694537576466888 0.498432848993884 0.618274626894053 0.836168768530724 0.236959879029879 0.629169333975887 0.574695798566719 0.220617818407129 -0.08443397988421 0.236959879029879 0.678195515844138 1.09764173849473 1.26650969826315 1.84937652714124 2.16532303251442 0.422169899421049 0.296880767979964 -0.0517498586387093 -0.819826707907974 -1.52253531468624 -1.78400828465024 -1.66961386029099 -1.29919381950865 -1.14666792036298 -0.896089657480808 -0.96145789997181
MMP0174 -0.205065976745732 -0.527312511631883 -0.840581160405641 -1.89015530124665 0.981071558357701 -0.166390338230557 0.0488252325585078 0.429662046514868 0.195300930234031 0.107415511628717 0.0292951395351047 -0.0292951395351046 0.136710651163822 0.615197930237197 0.244126162792539 0.468722232561674 -0.0878854186053138 1.04485997675207 0.322246534886151 0.371071767444659 0.605432883725496 0.937444465123348 1.2596910000095 2.01159958141052 2.09948500001583 2.09948500001583 1.85535883722329 -0.0390601860468061 -0.810498860471228 -0.810498860471228 -1.00579979070526 -1.21086576745099 -0.966739604658453 -0.878854186053139 -1.22063081396269 -1.07415511628717 -1.17180558140419 -1.09368520931057
MMP0194 -1.19600055476755 -0.819965445845 -0.400237057563523 -1.35911715310204 0.774898092416389 1.86301239871271 -0.172349424922834 0.840856285229585 0.261135492307325 0.0365589689230255 -0.219353813538153 -0.725956668614363 -0.50660285507621 0.172349424922834 0.631947891383726 1.00276029046013 -0.151458585538248 0.637170601229872 0.720733958768216 0.71551124892207 0.590166212614554 1.00276029046013 1.19600055476755 1.67648986061302 1.95329348245879 2.10475206799704 2.34499672091978 -0.0365589689230255 -0.0731179378460509 -0.590166212614554 -0.992314870767834 -1.20122326461369 -1.22733681384443 -1.20122326461369 -1.32656830092121 -1.14899616615223 -1.03409654953701 -1.14377345630608
MMP0200 -0.514203207470425 -0.59433877227101 -0.224619066577046 -0.913537705644673 0.679398186715203 0.533251738409856 0.00667796373338214 0.193660948268082 0.300508368002196 -0.00667796373338212 -2.49088047255154 -0.353932077869253 -0.420711715203075 0.140237238401025 0.634406554671303 0.50084728000366 0.434067642669839 1.68952482454568 1.31555885547628 0.68783026453836 0.514203207470425 0.701186192005125 0.995016596273939 1.66281296961215 1.47582998507745 1.86315188161362 3.55935466989268 0.233728730668375 -0.420711715203075 -0.567626917337482 -0.674474337071596 -0.727898046938653 -0.380643932802782 -0.0734576010672035 -0.393999860269546 -0.0734576010672035 -0.741253974405417 -0.808033611739239
MMP0423 -0.625177094840328 -0.996375994901773 -1.08491298896953 -0.918476213271663 0.291277999030852 0.413606088589712 -0.78147136855041 0.468882821130246 1.07452313175681 0.117220705282562 -0.390735684275205 -0.136757489496322 -0.625177094840328 0.586103526412808 0.703324231695369 0.898692073832972 0.820544936977931 2.34441410565123 0.566566742199047 -0.332125331633924 -0.0195367842137603 0.644713879054089 0.879155289619212 2.26626696879619 2.61792908464387 1.91460485294851 2.87190727942276 0.586103526412808 -0.371198900061445 -0.605640310626568 -0.468882821130246 -0.74239780012289 -0.586103526412808 -0.410272468488965 -1.01591277911553 -0.507956389557767 -1.56294273710082 -1.54340595288706
MMP0461 -0.189313055429081 -0.470538466323483 -0.488646165566381 -0.777496812243905 0.361143660071305 0.984221269672035 0.0469162897222158 0.440631864974378 0.800600390919211 -0.380546334837274 -0.639273712860123 -0.661771745731675 -0.661771745731675 0.508125963589034 0.654363177254123 2.0267431824188 0.980584653891628 2.5891940042076 1.23931203191448 0.778102358047659 0.530623996460586 1.1830669497356 1.38554924557957 2.08298826459768 2.36421367549208 2.28547056044165 2.70168416856536 0.924339571712748 -0.301803219786842 -0.76301289365366 -0.976744205933405 -0.954246173061853 -0.560530597809691 -0.211811088300633 -0.504285515630811 -0.211811088300633 -0.954246173061853 -0.920499123754525
MMP0462 -0.416410954835244 -0.617815565017478 -1.01755036918309 -0.904060784689198 0.00101394633438626 0.4873708341177 -0.454174319244413 -0.00101394633438617 0.754253341848992 0.0115738418020035 -1.91435774306561 -0.177242980243841 -0.605227776881088 0.489909790984809 0.238154028257017 0.653551036757875 0.829780070667329 1.64798629953266 0.79201670625816 0.389207485893692 0.527673155393978 0.829780070667329 1.18223813848624 2.45360474026159 2.02561994362434 1.1067114096679 4.24107065562892 0.766841129985381 -0.353472014153296 -0.743693446381374 -0.945098056563608 -1.0709759379275 -0.529701048062751 -0.252769709062179 -0.605227776881088 -0.277945285334958 -0.970273632836388 -0.945098056563608
MMP0463 -0.193203511293829 -0.491790756020656 0.491875256210914 0.591540429168948 -0.785002253557377 -0.266584698964917 0 0.772814045175317 1.28216875676814 -0.421534933731991 -2.28331422438162 -0.61473844502582 -1.05383733432998 -0.14051164457733 -0.0175639555721663 0 0.983581512041312 1.80908742393313 0.386407022587658 -0.193203511293829 -0.228331422438162 0.368843067015492 0.61473844502582 1.73883160164446 1.98472697965479 1.58075600149497 1.65101182378363 0.860633823036148 -0.193203511293829 -0.632302400597986 -0.895761734180481 -1.00114546761348 -0.807941956319649 -0.562046578309321 -1.08896524547431 -0.878197778608314 -1.29973271234031 -1.07140128990214
MMP0474 -0.624029570236438 -1.00882257192117 -1.40972069989841 -0.404635947996682 0.487733180688965 -0.0123588556267641 -0.0320403368753196 0.693146473992051 0.826344051498303 -1.39361557360589 -2.20760076947743 -1.08282122609131 -1.452814496942 -0.0320403368753196 0.204755356469128 0.500749973149687 0.693146473992051 1.80312628654415 -0.0468400677093476 0.11595697146496 0.204755356469128 0.826344051498303 1.07793947567678 1.68472843987192 1.81792601737818 1.21113705318303 1.84752547904623 0.855943513166359 0.0123588556267643 -0.60922983940241 -1.08282122609131 -1.15681988026145 -0.934823917751026 -0.594430108568382 -1.23081853443159 -1.06802149525728 -1.46761422777603 -1.452814496942
MMP0484 -0.518036936355339 -0.719869508961315 -0.169906279150513 -1.13899092530591 1.00818471510551 1.73849178027106 -0.127827295983785 0.396937392791753 0.639136479918925 0.733325013801713 -0.800602538003705 -0.544947946036135 -0.477670421834143 0.316204363749363 0.881335567046096 1.00243511060968 0.410392897632151 2.18651953656474 0.612225470238128 -0.235471334706972 0.154738305664582 0.652591984759323 0.975524100928885 2.06541999300116 2.37489660433032 1.80976540103359 2.61709569145749 0.289293354068566 -0.666047489599721 -1.05625712997128 -1.36573374130044 -1.35227823646004 -0.867880062205697 -0.383481887951355 -0.840969052524901 -0.275837849228167 -1.15044566385406 -1.27154520741765
MMP0652 -0.0393519030315369 -0.252976519488451 -0.700637663208545 -1.29040437534397 0.253142876847667 2.87519319770731 -0.106812308228457 0.54530494200844 0.713955955000741 0.444114334213059 -0.826389963662274 -0.444114334213059 0.0281085021653835 0.219246316889991 1.01752777838688 0.995040976654576 0.725199355866894 2.16435466673453 0.815146562796121 0.0955689073623039 0.286706722086912 0.713955955000741 0.905093769725348 1.07374478271765 2.51290009358528 2.45668308925452 2.13062446413607 0.54530494200844 -0.691469153268434 -1.02877117925304 -1.10747498531611 -0.702712554134587 -0.950067373189962 -0.747686157599201 -0.792659761063814 -1.07374478271765 -0.972554174922269 -0.68022575240228
MMP0739 -0.153940011321808 -0.41876733617022 0.284451294447004 -1.36272459816765 0.850704644251697 0.305319438395812 0.0018407680007875 0.469183105968574 1.31039931431059 -0.138361933389548 -1.16651507691868 -1.13535892105416 -0.77706312861219 -0.309720790644403 0.157621547323383 -0.200674245118587 0.9209473660041 1.6531170288203 1.02999391152992 0.765166586681505 1.10788430119121 1.45060201570092 1.54407048329448 2.55664554889135 2.26066206817842 1.96467858746549 2.83705095167202 0.671698119087948 -0.527813881696037 -1.02631237552834 -1.21324931071546 -0.979578141731563 -0.839375440341228 -0.621282349289594 -0.481079647899258 -0.465501569966999 -0.574548115492815 -0.527813881696037
MMP0818 -0.790475925770178 -0.865166564425627 -0.939508671664231 -1.24416853769703 0.792330867781186 0.436519628251233 0.367228973389295 0.292538334733845 -0.354780533613387 -0.653543088235186 1.30086195658242 0.118260177871129 -0.217847696078395 0.0311210994397708 0.0560179789915874 0.242744575630212 0.00622421988795416 1.47514011344513 -0.0809148585434039 -0.392125852941112 -0.417022732492928 -0.0809148585434039 0.0186726596638625 0.939857203081077 1.40044947478968 0.827821245097902 1.33820727591014 0.0186726596638625 -0.217847696078395 -1.16392911904743 -1.78635110784284 -1.59962451120422 -1.38800103501378 -0.740682166666544 -1.13903223949561 -0.98965096218471 -1.67431514985967 -1.63696983053194
MMP0819 -0.83973769115027 -0.860454355172276 0.000712798259005183 -1.52563075246513 1.45720937043304 -0.561025285213636 0.0200038657630012 0.827953762621256 -0.218237770490074 -0.373612750655123 1.38730369121543 0.0717955258180176 -0.705079375007227 0.568995462346174 0.724370442511224 0.506845470280155 0.0200038657630012 1.24228704306139 0.123587185873034 -0.435762742721142 -0.33217942261111 -0.0628627903250248 0.0303621977740045 0.890103754687276 0.993687074797309 0.869387090665269 1.54267867138048 -0.0421461263030183 -0.352896086633116 -1.16084598349137 -1.51302927186548 -1.51302927186548 -1.15048765148037 -0.767229367073247 -1.11941265544736 -0.694721042996224 -1.54410426789849 -1.58553759594251
MMP0820 -0.00737607012871308 0.129633501417919 -0.0873132542408804 -0.998805451054704 0.17458607924069 -0.134572000006853 -0.178638034562003 -0.0758808559020292 -0.509744499133031 -0.612501677793005 0.129633501417919 -0.623919142088558 -0.0872983201975819 0.689089251900001 0.711924180491106 0.4721574302845 0.609167001831132 0.780428966264422 0.278060537260104 0.106798572826814 0.300895465851209 0.837516287742185 1.18004021660877 2.44737875341511 2.53871846777954 2.10485482454853 2.47021368200622 0.449322501693394 -0.738093785044085 -1.60582107150609 -1.61723853580164 -1.18337489257064 -1.52589882143722 -1.29754953552617 -0.646754070679663 -0.486909570541926 -0.966443070955138 -0.955025606659586
MMP0837 -0.022989926223049 -0.193478896856797 -0.419090830320518 -1.77186097067062 1.10411209034009 1.28309858645558 -0.420797524368461 0.332195429263926 0.872077169604128 -1.08854599268397 -2.43825034353448 -0.065612168881486 -0.108234411539923 0.175913872849657 0.431647328800279 0.630551127872985 -0.15085665419836 1.11360321133527 0.715795613189859 0.090669387532783 0.232743529727573 0.374817671922363 0.502684399897674 1.12781062555475 1.08518838289631 0.886284583823607 3.35837465801295 -0.207686311076276 -0.619701323441167 -0.71915322297752 -0.974886678928142 -0.918057022050226 -0.491834595465856 -0.193478896856797 -0.619701323441167 -0.250308553734713 -0.86122736517231 -0.989094093147621
MMP0847 -0.939606632800897 -0.236417152769258 0.646183181900912 -1.34033470090923 1.69455220432204 2.14784178260156 -0.321284848635145 0.418276501053303 0.309160892082876 -0.00606197827613482 -0.369780674844224 -0.345532761739685 0.454648370710111 0.697127501755504 1.02447432866678 0.903234763144088 0.248541109321528 1.66704402593708 0.636507718994156 0.260665065873797 0.442524414157842 0.794119154173661 0.903234763144088 1.84890337422112 2.1762502011324 1.08509411142813 2.24899394044602 0.297036935530606 -0.563763979680538 -0.939606632800897 -1.2184576335031 -1.23058159005537 -0.927482676248627 -0.575887936232808 -0.709251458307774 -0.297036935530606 -1.06084619832359 -1.07297015487586
MMP0988 -0.673008459862888 -0.457234755174023 -0.0525452536655856 -1.67392973943231 0.62019630439954 0.752734120886769 -0.673008459862888 0.0873369757073977 0.405860063581436 0.241461050485158 -1.64912760012204 -0.190086358892571 0.00513746915925869 0.436684878536988 0.8579573495962 1.16620549915172 0.282560803759228 0.888782164551753 0.673008459862888 0.755207966411027 0.929881917825822 1.44362883375169 1.45390377207021 1.96765068799608 1.58747797021093 1.47445364870724 2.62524674038119 0.169536482255537 -1.0942809309221 -1.25867994401838 -1.50527846366279 -1.44362883375169 -1.36142932720355 -1.08400599260358 -1.17648043747024 -1.19703031410727 -1.18675537578876 -1.1559305608332
MMP0998 -0.0635379430106422 -0.387003834701184 0.240020482975224 -0.303529163875021 1.62549825452911 0.677503168631833 -0.213718535581251 0.999278558258281 0.814440905863686 -0.410108541250508 -1.17256385737821 -0.514079720722468 -0.0981950028346288 0.73357443294105 0.548736780546455 0.906859732060983 1.13790679755423 2.52418919051369 0.895307378786321 -0.0288808831866555 0.121299709383953 0.73357443294105 0.825993259138348 2.23538035864714 2.70902684290829 2.42021801104173 2.28158977174579 1.31119209667416 -0.444765601074495 -0.825993259138348 -1.14945915082889 -1.02238326480761 -0.987726204983619 -0.675812666567739 -0.606498546919766 -0.698917373117064 -0.444765601074495 -0.802888552589023
MMP1225 -0.0376771233497063 -0.263739863447944 0.347340097105831 -0.816059835189868 -0.589788052992006 0.251358896975367 -0.32967482930993 1.56360061901281 2.21353099679524 -0.414448356846769 -0.810058152018685 -0.998443768767217 -0.923089522067804 -0.38619051433449 -0.113031370049119 0.536899007733315 0.602833973595301 1.65779342738708 0.791219590343832 0.715865343644419 0.810058152018685 1.27160291305259 1.18682938551575 1.44114996812627 1.76140551659877 1.72372839324906 2.10049962674613 0.546318288570741 0.235482020935664 -0.320255548472504 -0.894831679555524 -0.970185926254937 -1.04554017295435 -0.970185926254937 -0.678188220294713 -0.63109181610758 -0.734703905319273 -0.536899007733315
MMP1486 -0.341810574331662 -0.326448301327991 -0.305246382849709 -1.10563258152318 0.418488648588296 0.122635942348052 0.334129437829827 1.48629991310509 0.702823989917911 -0.0729707967674333 -0.349491710833497 -0.979344903983974 -0.602969215394055 0.380216256840837 0.62601262489956 1.02543172299498 -0.0806519332692684 0.672099443910571 0.457027621859188 0.856446719954613 0.572244669386714 0.503114440870199 0.925576948471129 1.31731491006472 1.52470559561427 1.59383582413078 1.77050196367299 0.0345651142582579 -0.549201259881209 -1.01006944999131 -1.48629991310509 -1.54006786861794 -1.47093764010142 -1.27122809105371 -1.32499604656655 -1.28659036405738 -1.20977899903903 -1.071518542006
MMP1529 -0.534958553342145 -0.90274255876487 0.932584853879056 -0.96892839998728 0.586100306844923 0.30302469805262 -0.518241098550203 0.367784005422725 0.886025103972928 -0.718850556053507 -1.06991710668429 -1.00304728751652 -0.969612377932638 0.0668698191677681 0.234044367087188 -0.150457093127478 0.133739638335536 1.55472329565061 0.81915528480516 0.0668698191677681 0.234044367087188 0.752285465637391 0.90274255876487 1.93922475586528 1.95594221065722 1.7887676627378 2.65807531191878 -0.16717454791942 -0.969612377932638 -0.90274255876487 -1.28724401897954 -1.40426620252313 -0.685415646469623 -0.300914186254957 -0.651980736885739 -0.217326912295246 -0.852590194389044 -1.10335201626817
MMP1660 -0.70290198253011 -0.317439605013598 -1.83610070745271 -2.17857677411373 0.0882154912402064 1.37058103654484 0.170056931257285 0.52150792252234 -0.0226742575009713 0.102034158754371 -0.929644557539823 -1.25842129130391 -0.44214802126894 0.0906970300038852 0.26075396126117 0.600867823775739 -0.249416832510684 1.05435297379517 0.362788120015541 0.034011386251457 0.0226742575009713 0.498833665021368 0.940981686290309 1.71190644132333 1.84795198632916 1.94998614508353 2.40347129510296 -0.0906970300038852 -0.555519308773797 -0.827610398785452 -1.26975842005439 -1.38312970755925 -1.24708416255342 -1.45115248006216 -1.24708416255342 -0.884296042537881 -0.600867823775739 -0.827610398785452
MMP1661 -0.155911083119799 0.113409175651701 -0.212307247221579 -1.99960888576167 0.573368440653425 0.0334927836782082 0.101167345707542 0.896886292077883 0.652049693194701 0.297036624814087 0.0399581959867463 -1.22095028826164 -0.535407811388731 -0.0334927836782083 0.309278454758247 0.725500672859656 -0.204878402896436 0.52963139375311 1.60691242883911 1.71708889833654 0.909128122022042 0.774467992636292 1.17844838079354 1.52121961923 1.52121961923 1.9986509870522 1.55794510906247 -0.119185593287322 -0.645584280886163 -0.755760750383595 -1.07404832893173 -1.36785224759155 -1.14749930859669 -1.15974113854085 -1.04956466904341 -0.682309770718641 -0.510924151500413 -0.706793430606959
MMP1685 -0.0731457371360179 -0.240214004971122 0.0118873722631465 -1.09681211370532 0.346668178863549 0.027813349807507 -0.0842836216583581 0.411352239585784 0.589558391943228 -0.039732083568997 -0.301472369843993 -0.407282272806226 -0.0118873722631464 0.227577144967169 0.355662816974082 0.68979935264429 0.879143389524075 1.15759050258258 1.50286492277513 1.00722906153099 1.25783146328364 1.55855434538683 1.66993319061023 2.22125847446608 2.26581001255544 2.53868818335277 2.17670693637672 0.945970696658117 -0.368299676978035 -0.440695926373247 -0.830521884655156 -1.34286457268281 -1.47095024468972 -1.66029428156951 -1.15352053580302 -1.13124476675834 -0.540936887074309 -0.490816406723778
[+] Show/hide bicluster #131 motif PSSM #1. bicluster 131 motif PSSM #1 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0.647059 0 0 0.352941
2 0.235294 0.529412 0 0.235294
3 0 0 0.529412 0.470588
4 0 0 0.882353 0.117647
5 0.176471 0.176471 0.352941 0.294118
6 0.235294 0.117647 0.647059 0
7 0.058824 0 0.941176 0
8 0.117647 0 0.529412 0.352941
9 0 0 1 0
10 0.844693 0.008248 0.008248 0.138811
11 0.277622 0.016496 0.016496 0.689387 [+] Show/hide bicluster #131 motif PSSM #2. bicluster 131 motif PSSM #2 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 1 0 0 0
4 0 1 0 0
5 0 1 0 0
6 0.25 0.25 0 0.5
7 0 0.25 0.75 0
8 1 0 0 0
9 1 0 0 0 |