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[+] Show/hide bicluster #130 rows and columns.
bicluster 130
Methanococcus maripaludis S2
14x39
[+] Show/hide bicluster #130 rows (genes).
bicluster 130 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #130 rows (short gene names).
bicluster 130 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #130 rows (long gene names).
bicluster 130 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #130 rows (NCBI RefSeq gene IDs).
bicluster 130 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #130 gene upstream sequences.
bicluster 130 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #130 columns (arrays; conditions).
bicluster 130 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #130 ratios.
bicluster 130 ratios
Methanococcus maripaludis S2
14x39
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0034 -0.262688544098707 0.87072746427536 0.626884695869165 0.383949382885374 0.61716210192594 0.295927455759344 0.312650329055016 -2.84563843897313 -4.41136564386232 -0.960320415311666 0.340203196455702 0.142110195987825 -0.0990465002339386 -0.133497456837048 -0.0129191087261659 -0.305752239852593 -0.97754589361322 -1.10673698087488 -0.150722935138602 0.366041413908034 0.469394283717361 -0.193786630892489 0.417717848812698 0.340203196455702 -1.4770847643583 -0.348815935606479 -1.06367328512099 -1.68379050397696 -1.8560452869925 -1.6665650256754 -1.83881980869095 1.00338411106555 1.10673698087488 0.951707676160888 0.667487284185238 0.856967545502338 0.434943327114252 0.176561152590934 -0.0732082827816068
MMP0223 0.0693611387905165 1.37788585492559 0.647093438480503 0.431733384673376 0.504514344685757 0.436953335530271 0.192659867291992 -1.93051581350692 -5.10528686683472 -1.23859176411637 0.0693611387905165 0 -0.0198174682258619 0 0.00990873411293097 -0.693611387905168 -0.396349364517239 0.0693611387905165 0.683702653792236 0.0693611387905165 0.227900884597412 -0.505345439759479 -0.356714428065515 -0.287353289274998 -0.673793919679306 -0.723337590243961 -1.36740530758447 -1.54576252161723 -1.57548872395602 -1.34758783935861 -1.68448479919826 0.82242493137327 1.02059961363189 0.535071642098272 0.0495436705646549 0.435984300968962 0.237809618710343 0.445893035081893 -0.108996075242241
MMP0224 -0.00947144391548227 0.9999647210332 0.38752938445333 0.489887051533293 0.601938769875083 0.702300614293175 0.799668705775574 -3.52102267767367 -3.47340782535031 -1.00397305504112 0.0473572195774113 0.142071658732234 -0.0568286634928935 0.0568286634928936 0.0568286634928936 -0.445157864027666 -0.284143317464468 -0.217843210056092 0.520929415351524 0.170485990478681 0.416743532281219 -0.738772625407616 -0.255728985718021 -0.20837176614061 -0.625115298421829 -0.520929415351524 -1.66697412912488 -1.72380279261777 -1.78063145611066 -1.4964881386462 -1.82798867568808 1.16498760160432 1.14604471377335 0.767186957154063 0.520929415351524 0.928201503717261 0.691415405830205 0.767186957154063 -0.255728985718021
MMP0639 0.0238366574269283 0.85731280751705 -0.0386924617802083 0.335429619336282 0.428104592473448 0.497376236612639 0.531708478680423 -2.52772477849213 -3.08581689445015 -0.856286078336577 0.390554463995055 -0.00183358903284064 -0.0825115064778286 0.152187889725773 0.265870409761892 -0.852618900270895 -0.72060048990637 -0.397888820126418 0.650924106658425 1.46503763723967 0.969968598372696 -0.471232381440043 -0.368551395600968 -0.672927175052513 -1.00297320096383 -0.639922572461382 -1.18999928231357 -1.62272629406396 -1.76207906055985 -1.76941341669121 -1.98944410063209 1.52737966435625 1.70340421150895 1.43203303464854 1.1056541868029 0.907626571256114 0.526240052425262 0.584914901476163 -0.0788443284121473
MMP0640 -0.0806661812562159 0.8238850138397 -0.225353851661768 0.0749451779343262 0.303960284719969 0.298078415106836 0.30277311873784 -2.7620037434952 -3.30157067699533 -1.07017133799913 0.428427051560791 0.0197183998626305 -0.0806661812562159 0.159539780706738 0.241998543768648 -0.772602758253979 -0.722410467694556 -0.403330906281079 0.647122031855421 1.48605031692007 1.00922355660555 -0.378234761001368 -0.410501233503854 -0.510885814622701 -1.04149002910803 -0.86581701215005 -1.31037729996208 -1.59360522526169 -1.84815184167019 -1.79795955111077 -1.92702544112071 1.46812449886313 1.60077555248446 1.18131140995214 0.840720866870339 0.776187921865366 0.295775997939458 0.514470978234088 -0.0519848723651169
MMP0641 -0.131373716158267 0.774020350091504 -0.124935470247935 0.225860913250659 0.406977451350868 0.506433891212715 0.59087299802987 -2.5308086693584 -3.48176401738018 -0.923166654085118 0.294703201111788 -0.00710128195450092 -0.0639115375905082 0.0852153834540109 0.23434230449853 -0.681723067632087 -0.614260889064329 -0.319557687952541 0.649767298836833 1.29243331571917 0.990628832652877 -0.458032686065309 -0.333760251861543 -0.614260889064329 -0.983527550698376 -0.866356398449111 -1.27112946985566 -1.65104805442146 -1.80017497546598 -1.80017497546598 -1.93154869162425 1.44156023676368 1.5764845938992 1.24627498301491 0.837951270631107 0.734982682290844 0.31600704697529 0.525494864633067 -0.0248544868407532
MMP0952 0.0363737225808479 0.705377381806515 -0.300341682964655 0.119209783437568 0.406316935939478 0.445370444033174 0.402849568398449 -1.8659037282628 -2.36009484331138 -0.633509001616436 0.351612651614864 0.0424360096776559 -0.048498296774464 0.0757785887100999 0.112152311290948 -0.339488077421248 -0.460733819357408 -0.306145498388804 0.463764962905812 0.957841361295663 0.821439901617483 -0.163681751613816 -0.048498296774464 -0.251584914517532 -0.691100729036111 -1.77928126291315 -2.13695620162482 -2.17332992420567 -2.18242335485088 -2.03086617743068 -2.03086617743068 0.994215083876511 1.12152311290948 0.918436495166411 0.581979561293568 0.33342579032444 0.003031143548404 -0.003031143548404 -0.488014111293044
MMP1362 -0.185124155784041 0.825072379238789 -0.0118398203745364 0.191494314678364 0.290032081079854 0.33511287392256 0.315631195178426 -2.86251759926755 -3.59270408366986 -0.507144624741715 0.421399834291578 0.205677384213136 -0.0162978905052604 0.0149662326945138 0.0118398203745364 -0.278916525383363 -0.385214544262595 -0.485259738501873 0.802822137328823 0.433905483571488 0.405767772691691 -0.163239269544199 -0.0788261369048087 -0.100711023144651 -0.588431345061127 -0.854176392259208 -1.69830771865311 -2.00156971369092 -2.13913185576993 -2.02970742457072 -1.92028299337151 1.08107283380681 1.25927833604553 1.13109543092645 1.01854458740726 1.03105023668717 0.652754345969907 0.227562270452978 -0.169492094184154
MMP1363 -0.194219465807236 0.898742294733138 0.0563719784722121 0.225051185864788 0.336444084057876 0.444195684151471 0.394140680175203 -1.61698319207963 -4.27261651446788 -0.637176142209706 0.483844984993466 0.238515133447483 0.00340735904924977 -0.00340735904924977 0.00681471809849948 -0.422512522106971 -0.313477032530978 -1.15168735864642 0.834802967066192 0.57925103837246 0.480437625944216 -0.156738516265489 -0.0851839762312441 -0.109035489575992 -0.582658397421709 -0.412290444959221 -1.40042456924165 -1.58782931695039 -1.73775311511738 -1.65938385698463 -1.78204878275763 1.22664925772991 1.57419988075339 1.4651643911774 1.3902024920939 1.34249946540441 0.885913352804938 0.262366646792232 -0.183997388659487
MMP1364 -0.274785285961208 1.01666601219658 -0.063627426984051 0.188373081048506 0.294101449225171 0.362140418517794 0.370703544643773 -0.0762099768155347 -4.73332616933491 -0.74308133668383 0.534089710741503 0.290266147142121 0.0232212917713697 0.0890149517902505 0.116106458856849 -0.549570571922416 -0.367670453046687 -1.26943061683488 0.669547246074493 0.665677030779265 0.503127988379677 -0.27091507066598 -0.193510764761414 -0.208991625942327 -0.727600475502917 -0.476036481313079 -1.18428588033986 -0.774043059045657 -0.866928226131136 -0.94820274733093 -1.3545753533299 1.33522427685376 1.84996291111912 1.79965011228115 1.74933731344318 1.64484150047202 1.11462200502575 0.278655501256437 -0.0735340906093374
MMP1370 0.193713235808041 1.3234938827001 -0.181055658179259 -0.18676424042428 0.166124474419058 0.31258341767294 0.545591868667275 -0.607419375156382 -3.23287704812872 -0.397621905079663 0.311980263985582 0.181478715651744 0.181478715651744 0.377231038152501 0.487341719559177 -0.10807159471396 -0.0713680342450677 -0.719797602528826 -0.00611726007814867 0.940018965342178 0.80951741700834 -0.152931501953717 -0.0142736068490136 -0.189635062422608 -0.438403638933987 -1.82090441659558 -2.02889125925264 -2.17978367451364 -2.31844156961834 -2.13492376727388 -2.20425271482623 0.92778444518588 1.09498955398861 0.772813856539448 0.528123453413501 0.732032122685123 0.356840171225339 0.711641255757961 -0.263042183360392
MMP1371 -0.0305156886429058 0.559329352180447 -0.126226695678649 0.238841222223547 0.382361111985078 0.389818094395666 0.330918740572904 -2.69531920494869 -3.51764063131128 -0.536717112013461 0.407474195408213 0.199249496433091 0.0520561747437806 0.231560225584403 0.278231278802965 -0.529536949979836 -0.583388165232023 -0.662369947601897 -0.0628264177942178 0.759302135055833 0.633649299467397 -0.332082494055152 -0.238740387618028 -0.310542007954277 -0.816743431324832 -1.59938109298995 -1.6424620651917 -1.96915943772163 -2.09122219229325 -1.99788008585613 -2.1055825163605 1.07881934555214 1.16139120893883 0.967526834030955 0.644419542517835 0.569027841164773 0.138218119147279 0.267461035752527 -0.199249496433091
MMP1432 0.0951189901183642 0.543999227230461 -0.272776188830304 -0.0179915960102899 0.219502661895659 0.37974108213107 0.352373899938629 -2.52272180910687 -2.0514226260052 -0.662174508131689 1.00606624163654 0.278040124961372 -0.0658516085434829 -0.021950536181161 0.00731684539372033 -0.417060187442058 -0.186579557539868 -0.212188516417889 1.11216049984549 1.52190384189383 1.03533362321143 -0.00731684539372033 0.0365842269686016 0.106094258208945 -0.369500692382876 -1.67555759516195 -1.84384503921752 -1.52190384189383 -1.47068592413778 -0.984115705455383 -1.25118056232618 1.78896869876462 1.90603822506414 1.43776011986604 0.90363040612446 0.398768073957758 -0.142678485177546 0.343891733504855 -0.248772743386491
MMP1658 0.229739528425497 0.842818705500682 0.0312150208327837 0.492992018599413 0.874948587425577 0.868032738401385 0.745204380521081 -2.43500552372827 -2.75810533814791 -0.828019550366896 0.181877126670185 -0.0287174410531872 -0.186663366845716 0.0239312008776559 0.186663366845716 -0.354181772989308 -0.612638742467992 -0.023931200877656 0.818447070015833 1.30664356792001 0.904599393175395 -0.813660829840302 -0.650928663872242 -0.904599393175395 -1.16305636265408 -1.31142980809555 -1.94321351126566 -1.97193095231885 -2.06765575582947 -1.76133638459548 -1.84748870775504 1.15827012247855 1.25399492598917 0.914171873526457 0.315891851585059 0.148373445441467 -0.277601930180809 0.330250572111652 -0.416402895271213
[+] Show/hide bicluster #130 motif PSSM #1. bicluster 130 motif PSSM #1 Methanococcus maripaludis S2 12x4
POSITION A C G T
1 0 0.2 0.8 0
2 0.4 0.2 0.4 0
3 0 0.8 0.2 0
4 0 1 0 0
5 0 0.2 0.4 0.4
6 0 1 0 0
7 0.4 0.6 0 0
8 0.8 0 0 0.2
9 0 0 0 1
10 0 0.4 0.4 0.2
11 0 0.2 0 0.8
12 0 0.2 0.8 0 [+] Show/hide bicluster #130 motif PSSM #2. bicluster 130 motif PSSM #2 Methanococcus maripaludis S2 19x4
POSITION A C G T
1 0.166667 0 0 0.833333
2 1 0 0 0
3 0.666667 0 0 0.333333
4 0 0 0 1
5 1 0 0 0
6 0.333333 0 0 0.666667
7 1 0 0 0
8 0.166667 0 0 0.833333
9 1 0 0 0
10 0 0.5 0.333333 0.166667
11 0.166667 0.333333 0.5 0
12 1 0 0 0
13 0.5 0.333333 0.166667 0
14 0.166667 0 0 0.833333
15 0 0 0 1
16 0.333333 0 0 0.666667
17 0 0.333333 0 0.666667
18 0 0.833333 0.166667 0
19 0.833333 0 0 0.166667 |