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[+] Show/hide bicluster #129 rows and columns.
bicluster 129
Methanococcus maripaludis S2
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[+] Show/hide bicluster #129 rows (genes).
bicluster 129 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #129 rows (short gene names).
bicluster 129 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #129 rows (long gene names).
bicluster 129 long names
Methanococcus maripaludis S2
26
long_name
[+] Show/hide bicluster #129 rows (NCBI RefSeq gene IDs).
bicluster 129 NCBI RefSeq IDs
Methanococcus maripaludis S2
48
[+] Show/hide bicluster #129 gene upstream sequences.
bicluster 129 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #129 columns (arrays; conditions).
bicluster 129 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #129 ratios.
bicluster 129 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_13 -0.224741173877484 -0.480329175542074 -0.0536100063913574 -0.755220064430311 -0.620177711258119 -0.770342686499422 -3.54958874306682 0.586089727955008 -0.427448899335607 -0.515582693013052 -0.365755243761396 -0.339315105658163 -0.462702416806585 -0.665410142264709 -0.630156624793731 -0.542022831116286 0.312874967554929 0.621343245425986 0.64778338352922 0.118980621464551 -0.0925404833613171 -0.0220334484193612 0.0220334484193612 0.55083621048403 -0.110167242096806 0.101353862729062 0.180674277038762 0.312874967554929 0.735917177206664 0.929811523297043 0.920998143929299 0.762357315309898 0.101353862729062 -0.330501726290418 -0.55083621048403
MMP0036 -0.126308094150601 -0.0825860615600085 0.338846359827546 -0.245530600557574 -0.178479341527275 -0.487266118970278 -3.66865466042309 -0.140882105014132 0.485800362117697 0.451794336769458 0.131166097771778 -0.0971600724235395 -0.0923020688023625 -0.174888130362371 -0.170030126741194 -0.0388640289694158 1.10276682200717 0.529522394708289 0.442078329527104 -0.0582960434541237 -0.325486242618857 -0.213752159331787 -0.223468166574141 -0.267190199164733 0.378924282451803 1.12705684011306 1.74888130362371 1.78288732897195 1.54970315515545 1.14163085097659 0.767564572145961 0.354634264345919 0.20889415571061 0.213752159331787 -0.213752159331787
MMP0072 0.201872984930823 -0.157012321612863 0.901522761120191 -0.537709230331882 -0.0316316462362981 0.417896245525207 -4.42815958196629 0.213088150760313 -0.459821799009097 -0.59440378896298 -0.437391467350117 -0.325239809055215 -0.347670140714196 -0.392530804032156 -0.347670140714196 -0.123366824124392 -0.179442653271843 -0.100936492465412 -0.168227487442353 0.112151658294902 -0.0224303316589804 -0.280379145737255 0.168227487442353 0 0.224303316589804 0 0.302809477396235 0.740200944746352 1.08787108546055 1.05422558797208 1.143946914608 0.986934592995136 0.538327959815529 0.459821799009097 -0.0672909949769411
MMP0131 0.154164612676692 -0.395465745561949 1.11646728360488 0.586001691404054 0.806944958205561 0.125551915270649 -5.11655386004298 0.489305075017326 -0.180975849663943 0.0469196647276888 0.00670280924681269 0.0871365202085649 -0.0201084277404381 -0.180975849663943 -0.288220797612946 -0.0335140462340635 0.154164612676692 -0.422276982549199 -0.167570231170317 -0.154164612676692 -0.489305075017326 -0.315032034600196 -0.0335140462340635 -0.00670280924681269 0.368654508574698 0.435682601042825 0.422276982549199 0.636766878447205 0.690389352421707 0.663578115434456 0.784228681877084 0.770823063383459 0.569738785979079 0.556333167485453 -0.0603252832213142
MMP0264 -0.505464035720705 -0.398817598471105 0.905482513067654 0.00778066188923922 0.0959322873597482 -0.621854651295363 -4.90784258946654 -0.301058364325638 -0.0611038805140391 -0.318832770533905 -0.363268786054572 -0.309945567429772 -0.318832770533905 -0.141088708451239 0.027768150527294 0.489902711942226 0.0544297598396939 -0.114427099138839 -0.167750317763639 -0.683208097803371 -0.309945567429772 0.107752978464494 -0.00778066188923922 0.0633169629438273 0.907601257836492 0.792067617482759 1.07645811681502 1.63635191237542 1.64523911547956 1.56525428754236 1.19199175716876 0.676533977129026 0.44546669642156 0.569887539879426 0.578774742983559
MMP0265 -0.276504519624489 -0.566834265230203 1.2074135854155 0.411051687999896 0.117644239712372 -0.686417009003532 -4.18920247623502 -0.387106327474285 -0.0138252259812244 -0.359455875511836 -0.553009039248978 -0.52535858728653 -0.221203615699591 -0.442407231399183 -0.276504519624489 0.0414756779436734 -0.0414756779436734 -0.165902711774694 -0.428582005417958 0.0691261299061223 0.0829513558873468 -0.0138252259812244 0.414756779436734 0.718911751023672 0.718911751023672 0.732736977004896 0.788037880929794 1.21661988634775 1.31339646821632 1.16131898242285 0.815688332892243 0.470057683361632 -0.0138252259812244 0.276504519624489 0.635960395136325
MMP0296 -0.794594571503467 -0.27862407052719 1.20685953200451 -0.609638248131418 -0.686833585445841 -1.01860264853182 -4.46552173411283 -0.546928731034854 0.402456990761496 -0.299262890566241 -0.536609321015329 -0.660442241249635 -0.515970500976278 -0.526289910995803 -0.619164601171533 0.165110560312409 -0.55724814105438 0.794594571503467 0.485012270917701 0.990663361874453 -0.319901710605292 0.74299752140584 1.03194100195255 0.753316931425365 0.918427491737774 1.50663386285073 0.65012283123011 1.31056507247974 0.856511031620621 0.433415220820073 1.0113021819135 0.319901710605292 -0.206388200390511 -0.216707610410037 -0.0103194100195256
MMP0554 -0.204276985185587 -0.392840356126128 1.48780740776572 0.326526311265687 1.13540236091348 0.759582457474702 -3.37893008690391 0.455694813106309 0.0471408427351352 -0.235704213675677 -0.487122041596399 -0.408553970371173 -0.58140372706667 -0.659971798291895 -0.314272284900903 -0.235704213675677 -0.738539869517121 -0.408553970371173 -0.455694813106309 0.67568541253694 0.0471408427351352 0.659971798291895 0.754253483762166 0.738539869517121 -0.565690112821625 -0.219990599430632 0.251417827920722 0.487122041596399 0.597117341311715 0.235704213675677 0 0 -0.67568541253694 -0.534262884331534 -0.691399026781986
MMP0580 -0.287267787776445 0.276002384334232 1.1296152248255 2.77368079054668 0.894094696002551 -0.500037642835987 -4.36026831899089 0.636495294485065 -0.0844905258166015 -0.129552139585456 -0.107021332701029 0.00563270172110677 -0.17461375335431 -0.129552139585456 -0.163348349912096 -0.276002384334232 -0.309798594660872 -0.321063998103086 0.140817543027669 0.095755929258815 -0.39992182219858 -0.377391015314153 -0.17461375335431 0.354860208429726 1.12090764250025 1.13217304594246 0.805476346118268 0.681556908253919 0.816741749560481 0.94066118742483 0.873068766771549 0.7491493289072 0.422452629083008 0.354860208429726 1.68417781461092
MMP0876 -0.0773765732290063 -0.0773765732290063 0.6667218395806 -0.429780573752196 -0.149395070235767 -0.856036431808234 -3.18122715981088 0.232129719687019 0.0580324299217547 0.0386882866145031 -0.0967207165362579 0.135409003150761 -0.309506292916025 -0.212785576379767 -0.232129719687019 0.174097289765264 0.309506292916025 -0.25147386299427 -0.0580324299217548 -0.773765732290063 0.212785576379767 -0.25147386299427 -0.193441433072516 -0.154753146458013 0.0773765732290062 0.135409003150761 0.290162149608774 0.851142305519069 1.16064859843509 1.2380251716641 1.54753146458013 1.37343417481486 0.502947725988541 0.36753872283778 0.135409003150761
MMP0883 0.135306449369141 0.356717002882281 0.34635883906138 0.628237949352573 0.259434537972771 -0.0526227569587447 -4.68423440964111 -0.448971400179423 0.0430520520719994 -0.055352638378285 0 -0.055352638378285 0.0369017589188567 0.0430520520719994 0.159907621981712 0.129156156215998 0.209109967206854 -0.0369017589188567 -0.0430520520719994 -0.547376090629707 -0.227560846666283 -0.485873159098279 -0.713434005764562 -0.984046904502844 -0.104554983603427 -0.184508794594283 -0.258312312431997 -0.055352638378285 0.123005863062856 0.159907621981712 0.387468468647995 0.209109967206854 0.22141055351314 0.405919348107423 -0.0492023452251422
MMP0906 -0.263443781586286 -0.0459981205944309 0.719916560333555 0.181779010998247 0.447008439626009 -0.0996889585137799 -4.14950442552569 -0.572885683767004 -0.00418164732676646 -0.33035013881455 -0.380529906735747 -0.397256496042813 -0.472526147924609 -0.572885683767004 -0.6481553356488 -0.606338862381135 0.405619790696346 0.932507353868919 0.288533665546885 -0.464162853271076 -0.0459981205944309 0.413983085349879 0.413983085349879 0.296896960200418 0.255080486932754 0.112904477822694 0.00418164732676646 0.0125449419802994 0.154720951090359 0.179810835050957 0.313623549507484 0.439072969310478 0.288533665546885 -0.154720951090359 0.196537424358023
MMP0941 -0.032934552094898 -0.724560146087755 0.92044185280013 -0.0642947996651077 -0.212761273950225 -0.237299129053976 -3.57370493015449 0.839831078419898 0.32934552094898 0.296410968854082 0.16467276047449 0.230541864664286 -0.214074588616837 -0.543420109565816 -0.955102010752041 -0.872765630514796 -1.26798025565357 -0.691625593992857 -0.675158317945408 0.428149177233673 -0.263476416759184 0.32934552094898 0.724560146087755 1.00450383889439 -0.065869104189796 0.461083729328571 0.378747349091326 0.708092870040306 0.543420109565816 0.691625593992857 0.872765630514796 0.47755100537602 0.131738208379592 0.0329345520948979 -0.592821937708163
MMP0970 0.181345397724439 -0.00863549512973505 1.24423517769661 0.565494483208224 0.436037254153786 1.02041452551645 -4.14019836534416 1.02762392043848 0.0777194561676166 0.25042935876232 -0.0431774756486758 0.129532426946028 -0.164074407464968 -0.319513319800201 -0.319513319800201 -0.371326290578612 0.129532426946028 -0.25042935876232 0.0604484659081462 0.0777194561676166 -0.474952232135434 -0.0949904464270868 0.354055300319142 0.440410251616494 -0.0259064853892054 0.388597280838083 0.872185008103252 0.923997978881663 0.854914017843782 0.820372037324841 0.682204115249078 0.544036193173316 -0.181345397724438 0.146803417205498 -0.354055300319142
MMP1011 -0.5624622254188 -0.0973572749734637 1.30826429237473 0.23047480780544 0.540248134707478 -0.0189189626378706 -4.12385301889936 -0.242702571987631 0.309609556666206 0.144884886716816 -0.436496301339855 -0.484944733677911 -0.184564453181964 -0.358978809598965 -0.378358182534188 0.0286086491054817 0.26116112432815 -0.136116020843908 -0.465565360742688 0.0189189626378706 -1.27949902402203 0.513092972486041 0.328988929601428 0.745645447708709 0.212712691990094 0.66812795596782 1.22044008462166 1.58864817039088 1.37547506810344 1.0847844740751 0.600300150694541 0.125505513781594 -0.155495393779131 0.106126140846371 -0.436496301339855
MMP1109 -0.188983320064639 -0.431961874433461 0.242943502462552 -0.119524831569162 -0.181426183068249 -1.21451510217777 -6.03916361087043 -0.0899920571736377 -0.0989912628910015 -0.00899920571736377 0.206981731499367 0.197982525782003 0.341969817259823 0.350969022977187 0.341969817259823 0.260976965803549 0.0449960285868187 0.458959491585552 0.0989912628910014 0.035996822869455 -0.386965845846642 0.00899920571736377 0.170984908629911 0.611945988780736 0.161985702912548 0.21598093721673 0.0179984114347275 -0.00899920571736377 0.0899920571736376 -0.21598093721673 0.125988880043093 -0.0269976171520913 -0.0179984114347275 -0.6209451944981 0.14398729147782
MMP1112 0.245553243729909 -0.149085897978873 1.52359527003669 0.490710752098271 0.193847202434807 0.219454818924526 -4.31005727945032 0.0876975870463961 0.333250830776305 0.131546380569594 -0.0263092761139188 -0.00876975870463961 -0.166625415388153 -0.89451538787324 -0.175395174092792 -0.201704450206711 0.754199248599006 0.043848793523198 -0.149085897978873 -0.727889972485087 -0.578804074506214 -0.841896835645402 -0.622652868029412 -0.43848793523198 0.0789278283417565 0.385869383004143 0.622652868029412 0.587573833210854 0.578804074506214 0.43848793523198 0.464797211345899 0.412178659118062 0.201704450206711 0.0263092761139188 -0.149085897978873
MMP1121 0.122197352760737 -0.391031528834359 1.1920528459182 0.156553162928889 1.16685507969349 0.316568213520695 -4.70514541545113 -0.085538146932516 0.256614440797548 0 -0.256614440797548 -0.439910469938653 -0.610986763803685 -0.684305175460127 -0.684305175460127 -0.720964381288348 0.684305175460127 -0.378811793558285 -0.672085440184054 -0.281053911349695 -0.244394705521474 -0.354372323006137 -0.219955234969327 -0.305493381901843 0.146636823312884 0.525448616871169 0.940919616257675 0.782063057668717 0.635426234355832 0.586547293251538 0.56210782269939 0.745403851840496 0.623206499079759 0.525448616871169 -0.134417088036811
MMP1265 0.0660965765814314 -0.0505444409152123 0.666886883770107 -0.192197608280784 0.0623676176845386 0.0809772176859903 -4.57680565676945 -0.27605040807539 -0.695958071063308 -0.804823020726842 -0.851479427725499 -0.874807631224828 -0.314930747240938 0.0583205087483219 -0.229394001076733 0.454899968236911 -0.0660965765814314 -0.408243561238253 -0.532660646568006 0.602645257065993 -0.120529051413199 1.30249136204585 1.54354946487225 0.898135834724157 -0.0505444409152123 0.0272162374158835 0.307154679407828 0.493780307402458 0.260498272409171 0.314930747240938 0.299378611574719 0.0894247800807602 0.252722204576061 0.206065797577404 -0.128305119246308
MMP1334 -0.406287289009806 -0.590963329468808 1.10890540781152 -0.472530929451059 -0.219026719676315 -0.0963514368759644 -2.83449336165977 0.196987776489603 -0.627898537560609 -0.541716385346408 -0.73870416183601 -0.578651593438208 -0.73870416183601 -0.824886314050212 -0.763327633897211 -0.430910761071006 0.578651593438208 0.135429096336602 -0.123117360306002 0.0615586801530009 0.0246234720612003 0.073870416183601 0.123117360306002 -0.184676040459003 0.0984938882448014 0.406287289009806 1.16961492290702 1.55127873985562 1.71133130825342 1.53896700382502 1.20655013099882 0.763327633897211 -0.123117360306002 -0.307793400765004 -0.233922984581403
MMP1356 -0.213925612903618 -0.539226319553216 1.02774431766542 0.231183445661498 0.0310486715781717 0.000447024164819031 -4.67273048116874 0.396013212064379 -0.0817722008272186 -0.163097377489618 -0.132600436241218 -0.264753848317618 -0.600220202050015 -0.783201849540414 -0.793367496623214 -0.569723260801616 -0.0817722008272186 0.548497918306378 0.304522388319179 -0.346079024980017 -0.651048437464015 -0.234256907069218 -0.335913377897217 -0.203759965820818 0.12154074082878 0.731479565796777 1.13810544910877 1.26009321410237 1.21943062577117 1.14827109619157 0.894129919121576 0.609491800803177 0.19270027040838 0.0198842700007808 -0.407072907476817
MMP1440 -0.149374965881466 -0.338059133310685 1.99792347142015 0.515690732540723 0.683722867515993 0.0101743534655634 -5.0802526056132 0.463848578263498 -0.416677536406194 -0.448124897644397 -0.400953855787092 -0.322335452691584 -0.495295939501702 -0.227993368976974 -0.165098646500567 -0.00786184030955083 -0.919835316217446 -0.180822327119669 0.102203924024161 0.0707565627859574 -0.526743300739905 -0.4795722588826 -0.275164410834279 -0.180822327119669 -0.306611772072482 -0.00786184030955083 0.4795722588826 1.07707212240846 1.32865101231409 1.25003260921858 0.888387954979243 0.794045871264633 0.66825642631182 0.904111635598344 0.180822327119669
MMP1467 -0.235545801644052 -0.438537006538118 -0.00926577307701143 0.144233602135403 -0.00804364422882619 0.0403526581593081 -4.00183845443556 -0.129990375099138 -0.324861931797441 -0.568451377670319 -0.462895951125405 -0.487254895712693 -0.341101228188966 -0.357340524580491 -0.276144042622865 -0.186827912469476 -0.0731528377287999 -0.406058413755067 0.219154497318654 0.357188516646618 0.560179721540684 0.64137620349831 0.365308164842381 0.00804364422882619 0.48710288777882 0.503342184170345 0.430265350408482 0.397786757625432 0.438384998604245 0.527701128757633 0.901204945762713 0.7956495192178 0.844367408392375 1.04735861328644 0.105479422577978
MMP1600 -0.017949003668179 -0.610266124718088 1.34520446735203 0.29401415715871 0.301038302305211 0.946449168522715 -5.11079530184949 1.04104221275439 0 0 -0.179490036681791 -0.233337047686328 -0.251286051354507 -0.484623099040835 -0.556419113713551 -0.0717960146727162 -0.538470110045372 -0.502572102709014 -0.0358980073363581 -0.0717960146727162 -0.107694022009074 0.143592029345433 0.484623099040835 0.987195201749848 0.0179490036681791 0.0358980073363581 0.107694022009074 0.682062139390804 0.933348190745311 0.933348190745311 0.538470110045372 0.430776088036297 -0.305133062359044 -0.538470110045372 -0.502572102709014
MMP1630 0.137794060596851 -0.498178526773229 1.4522357397899 0.492608530459438 0.360031607385819 0.0334552213636288 -4.42693671823409 0.254389034948032 -0.445180811159056 -0.551176242387402 -0.551176242387402 -0.434581268036221 -0.47697944052756 -0.349784923053544 -0.116594974351181 0.127194517474016 -0.105995431228347 -0.445180811159056 -0.434581268036221 -0.180192233088189 0.466379897404725 0.222590405579528 0.0741968018598427 -0.15899314684252 0.105995431228347 0.0423981724913387 -0.254389034948032 -0.190791776211024 0.031798629368504 0.095395888105512 0.201391319333859 0.360384466176379 0.47697944052756 0.339185379930709 -0.201391319333858
Unanno_61 -0.771417573935672 -0.194268973387223 1.50734202913948 0.580620255002714 0.267776426043137 -0.939709907382447 -4.75407673594387 -0.288574300274224 -0.273485447972304 -0.371562987934786 -0.371562987934786 -0.469640527897267 -0.477184954048227 -0.462096101746307 -0.345157496406425 -0.61675683784099 0.179180121085303 0.167863481858863 -0.0509248765189807 0.382879627161226 -0.733695443180871 -0.303663152576145 -0.186724547236263 0.231991104142024 0.0509248765189811 0.194268973387224 0.499818232501108 0.364018561783826 0.488501593274668 0.537540363255909 0.529995937104949 0.545084789406869 0.160319055707903 -0.828000770067873 0.111280285726662
[+] Show/hide bicluster #129 motif PSSM #1. bicluster 129 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0.333333 0 0.666667
2 0 0.666667 0 0.333333
3 0 0.5 0.333333 0.166667
4 0 0 1 0
5 0 1 0 0
6 0 1 0 0
7 1 0 0 0
8 0 0.833333 0.166667 0 [+] Show/hide bicluster #129 motif PSSM #2. bicluster 129 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0.5 0 0 0.5
4 0 0.5 0.5 0
5 1 0 0 0
6 0 1 0 0
7 0 0.5 0 0.5
8 0 0 1 0
9 0 0 0 1
10 0 0 1 0
11 0 1 0 0 |