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[+] Show/hide bicluster #125 rows and columns.
bicluster 125
Methanococcus maripaludis S2
15x38
[+] Show/hide bicluster #125 rows (genes).
bicluster 125 genes
Methanococcus maripaludis S2
15
[+] Show/hide bicluster #125 rows (short gene names).
bicluster 125 short names
Methanococcus maripaludis S2
15
short_name
[+] Show/hide bicluster #125 rows (long gene names).
bicluster 125 long names
Methanococcus maripaludis S2
15
long_name
[+] Show/hide bicluster #125 rows (NCBI RefSeq gene IDs).
bicluster 125 NCBI RefSeq IDs
Methanococcus maripaludis S2
30
[+] Show/hide bicluster #125 gene upstream sequences.
bicluster 125 upstream sequences
Methanococcus maripaludis S2
15
upstream
[+] Show/hide bicluster #125 columns (arrays; conditions).
bicluster 125 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #125 ratios.
bicluster 125 ratios
Methanococcus maripaludis S2
15x38
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0292 0.0347174395529736 -0.38189183508271 -1.43586181394813 0.0933271432667872 -0.529551903176171 -0.548154666851135 -1.04844359434599 3.9170310987186 0.361061371350926 -0.208304637317842 0.145813246122489 0.402722298814494 0.888766452556125 0.833218549271367 0.874879476734935 0.805444597628988 0.888766452556125 0.243022076870815 0.333287419708547 0.49993112956282 0.777670645986609 1.13178852942694 1.07624062614218 0.985975283304451 0.451326714188657 -0.0347174395529737 -0.666574839417094 -1.21511038435408 -1.32620619092359 -1.7080980260063 -1.91640266332414 -1.80530685675463 -1.65255012272154 -1.65255012272154 -1.43035850958251 -0.979031795393856 -0.638800887774715 -0.576309496579362
MMP0293 -0.226083295976291 -0.532165296682653 -2.1690555657432 0.347514449867933 -0.419864026272171 -0.664139368568126 -0.618592954711971 4.40009787045935 0.69911911524976 0.128693568478812 0.351298659901621 0.685206297035834 1.03998316149094 1.02607034327701 0.977375479528271 0.914767797565606 0.747813978998499 0.420862750971248 -0.205214068655402 0.365211478115546 0.344342250794658 0.831290888282053 0.671293478821909 0.566947342217467 0.246952523297179 -0.163475614013626 -0.566947342217467 -0.810421660961164 -1.01215752506309 -1.33215234398337 -1.54780102629922 -1.52693179897833 -1.35997798041122 -1.2904138893416 -1.10954725256056 -0.747813978998499 -0.462601205613025 -0.553034524003541
MMP0294 -0.161485140641196 0.139588850384763 -2.29429805551222 -0.257872615824088 -0.851678981665842 -1.35823115985723 -1.43304400676163 3.11892217800382 -0.216225866282279 0.161485140641196 0.358551752949096 0.500877639615913 0.621307236026296 0.599410945769863 0.769107195257221 0.834796066026521 0.791003485513655 0.785529412949546 0.785529412949546 0.719840542180246 0.380448043205529 0.670573889103271 0.719840542180246 0.955225662436904 1.06470711371907 0.0246333265384875 -0.0191592539743792 0.0246333265384875 -0.281914737051579 -0.708892397052029 -1.0209145332062 -1.4095736852579 -1.73254396654029 -2.02266981243803 -2.0664623929509 -1.72706989397618 -1.45336626577076 -0.0246333265384875
MMP0434 -0.85608640201741 -0.404315750841926 -0.953677108434797 0.540284632231327 -0.255580700224078 -0.848365516307884 -0.94522018203553 2.98976476183633 -0.195514189374264 -0.430890495028719 -0.252460069774536 0.0854188206004068 0.453668847188827 0.63969205649638 0.818122481750563 0.799140521617139 0.795344129590454 1.76342409639506 -0.00949098006671188 0.00949098006671188 0.358759046521708 0.829511657830617 0.985163730924692 1.08007353159181 1.27368952495273 -0.529596687722522 -0.316998734228176 -0.70423072095002 -0.924421458497736 -1.15220498009882 -1.24331838873925 -1.1332230199654 -1.07627713956513 -1.19016890036567 -1.06488796348507 -1.1332230199654 -1.06488796348507 -0.309405950174807
MMP0614 -0.483194928925832 -0.547147198930722 -2.15822244594358 -0.0454716201453799 -0.9730755418509 -1.16933441399585 -1.55415154465574 2.90022967480582 0.518723967817437 -0.0426348466699263 0.0497406544482475 0.547147198930722 0.845591125620206 0.994813088964948 0.838485317841885 0.845591125620206 0.611099468935611 0.646628507827216 0.660840123383858 0.611099468935611 1.00902470452159 1.57038351900895 1.65565321234881 1.40694994010757 1.42826736344253 0.241597464462916 -0.0284232311132842 -0.753215624502032 -1.03034212785655 -1.51353705678239 -1.57038351900895 -1.53485448011735 -1.42826736344253 -1.46379640233414 -1.23641055342786 -0.952178242295022 -0.866908548955169 0.0426348466699264
MMP0720 -0.371309616756634 -0.392991930143883 -1.81916038725527 -0.0298576025470191 -0.884490160484854 -1.23776548055817 -1.53719282954004 4.18080891638323 0.382150773450258 0.604394485669558 0.60981506401637 0.490562340386502 0.73448836599305 0.588132750629121 0.653179690790867 0.571871015588685 0.48514176203969 0.159907061230959 0.0406543376010913 0.398412508490695 0.414674243531131 0.653179690790867 0.750750101033486 0.853741089622918 0.897105716397415 -0.0189720242138426 -0.430935978571568 -0.458038870305629 -0.701964895912177 -1.05430248845497 -1.3361725624892 -1.43916355107863 -1.33075198414239 -1.19523752547208 -1.06514364514859 -0.891685138050603 -0.929629186478288 -0.420094821877944
MMP0721 -0.121595553479667 -0.0342961817506754 -1.47859084952821 0.425281695429018 -0.869276553691384 -1.22883956892361 -1.67540725191288 3.65984711496224 0.327372643983719 0.757633833219465 0.757633833219465 0.713984147354969 0.78257651085632 0.745162494401037 0.738926824991824 0.576799420352267 0.452086032167993 0.196423586390232 0.0966528758428123 0.657863122672045 0.757633833219465 1.00706060958801 1.02576761781565 0.888582890812953 1.38743644355005 0.0592388593875302 -0.202659255799445 -0.171480908753377 -0.520678395669344 -0.988353601360372 -1.23778037772892 -1.23154470831971 -1.06318163427094 -0.969646593132731 -0.751398163810251 -0.701512808536541 -0.944703915495876 -0.084181537024385
MMP0852 -0.864521375333206 -0.672405514148049 -1.59872742413212 0.256415054726597 -0.463601273872769 -0.967387799545957 -1.2299908136611 3.57868584184468 0.409135630301723 -0.309519998576086 -0.04625011472976 0.480289652962892 0.935675397994375 0.964137007058843 1.0281756274539 0.843175168534855 0.935675397994375 0.942790800260492 0.515866664293477 0.288173791777735 0.658174709615815 1.32702252263081 1.54759999288043 1.88202389938793 1.92471631298463 -0.152981148721514 0.124519539657046 -0.387789423503372 -0.743559536809218 -1.34836872942916 -1.71125424500112 -1.6614464291383 -1.55471539514655 -1.36971493622751 -1.00682942065554 -0.750674939075335 -1.01394482292166 0.04625011472976
MMP0996 -0.91176772260326 -0.43088761825376 -2.07660744640989 0.426582455798761 -1.31160451734047 -1.31762421257623 -1.28781239331271 2.98595617544665 0.388036915885982 -0.14045507998327 -0.0642760535516659 0.62133518433277 0.726081345676225 0.787976804651903 0.687991832460423 0.72132015652425 0.597529238572894 1.60690133879165 0.183305782351047 -0.0499924860957401 -0.00714178372796288 0.764170858892027 0.916528911755235 0.949857235819062 1.50691636660017 -0.354708591822156 -0.335663835214255 -0.697514210764374 -1.01651388394672 -1.1355436127461 -1.29266285476128 -1.25933453069745 -1.1736331259619 -1.38788663780078 -1.1926778825698 -1.47358804253634 -1.56881182557584 -0.311857889454379
MMP0997 -0.483497952519002 -0.00304308290718071 -1.57309940534501 0.26191056013306 -0.531753848684645 -0.726102197564883 -1.3861521184042 3.81328760369137 -0.164445890667402 -0.0368250659267619 0.068274436800824 0.597525504107596 0.702625006835182 0.725146328848236 0.657582362809074 0.69887145316634 0.717639221510551 1.41204665024639 0.143345510177671 -0.16069233699856 -0.0143037439137078 0.263459227580627 0.451136911022744 0.680103684822128 1.07047326638173 -0.41593398647984 -0.179460105342771 -0.599858116253115 -0.802550014370602 -0.810057121708287 -0.967706375799666 -1.00148835881925 -1.07655943219609 -1.22670157894979 -1.1216020762222 -1.14036984456641 -1.15913761291063 -0.0818677099528702
MMP1164 -0.940944351544321 -1.07009357626609 -2.48936689051856 -0.287032620603325 -0.770690846120095 -0.992016553909695 -1.34395312354691 4.08838500971931 0.215248707869616 -0.0122999261639781 0.0122999261639779 0.307498154099451 0.491997046559122 0.596546418952935 0.578096529706968 0.535046788133045 0.485847083477133 1.05779365010211 -0.233698597115583 0.424347452657242 0.381297711083319 1.10084339167604 1.08854346551206 1.4021915826935 1.46984117659538 -0.461247231149177 -0.553496677379012 -0.37514774800133 -0.750295496002661 -1.07624353934808 -1.32839202570963 -1.41449150885748 -1.33454198879162 -1.24229254256178 -0.983994093118244 -0.737995569838683 -0.842544942232496 -0.436647378821221
MMP1165 -0.844027914171655 -0.979672107365951 -1.91228135301186 -0.0037482932926911 -0.659219557758394 -0.903094476515336 -1.21332297392286 5.18152860096504 -0.0437271743253123 -0.0776382226238862 0.132610276827272 0.424245292195007 0.702315888243313 0.763355775180746 0.688751468923883 0.668404839944739 0.553107275729588 1.25167487068021 -0.355708818672192 0.675187049604454 0.410680872875577 0.844742291097323 0.946475435993045 1.09568404850677 1.34662580591622 -0.247193464116755 -0.2675400930959 -0.131895899901604 -0.362491028331907 -0.640561624380212 -0.918632220428518 -0.972889897706236 -0.803334656213367 -0.69481930165793 -0.504917431185917 -0.342144399352762 -0.532046269824776 -0.281104512415329
MMP1174 -0.881776228277337 -0.840763380450484 -2.11040416514803 0.364139567247874 -0.47007080088326 -0.850330601261234 -1.10303977843892 3.30197061138272 0.343482600549893 0.184557815220838 -0.00512660597835662 0.281963328809614 0.758737684796779 0.804877138601988 0.92278907610419 0.943295500017617 0.90740925816912 0.497280779900591 -0.199937633155908 0.866396410342268 1.06120743751982 1.32779094839436 1.26114507067573 1.44057627991821 1.21500561687052 -0.246077086961117 -0.148671573372342 -0.379368842398389 -0.753611078818422 -1.40469003806971 -1.61488088318233 -1.64051391307412 -1.49696894568013 -1.30215791850258 -1.08171386143325 -0.692091807078143 -0.58955968751101 -0.128165149458915
MMP1633 -0.49650385147624 -0.431485489973399 -1.84501775156964 -0.123974251388633 -0.707323039662815 -1.34298371015894 -1.31300223642614 3.7636534886725 0.112304442595816 -0.230519645328254 -0.348734848060692 -0.159590523688791 -0.0118215202732438 0.171412043962035 0.195055084508523 0.236430405464876 0.171412043962035 1.64319131798089 0.0886614020493286 0.49650385147624 0.384199408880424 1.12304442595816 1.38311787196952 1.73185272003022 1.69047739907386 -0.236430405464876 -0.112304442595816 -0.277805726421229 -0.762488057624225 -1.26490266923709 -1.56044067606818 -1.38311787196952 -1.11122290568492 -0.821595658990444 -0.703380456258006 -0.727023496804494 -0.644272854891787 -0.0177322804098657
MMP1634 -0.269925570963411 -0.13796195849241 -1.45997261245184 0.115575279375376 -0.571306180542482 -1.07129954881632 -1.38016146950533 3.87031059000413 -0.311913993113275 -0.365899107305957 -0.299917301070456 -0.185948726663683 0.00599834602140914 0.0359900761284548 0.191947072685092 0.329909031177502 0.299917301070457 1.45159973718101 0.239933840856365 0.227937148813547 0.389892491391593 1.00772213159673 1.38561793094551 1.65554350190892 1.59556004169483 -0.317912339134684 -0.233935494834956 -0.461872643648503 -1.00172378557532 -1.39161627696692 -1.63155011782328 -1.58956169567342 -1.33163281675283 -1.03171551568237 -1.00772213159673 -0.839768442997278 -0.671814754397822 -0.221938802792138
[+] Show/hide bicluster #125 motif PSSM #1. bicluster 125 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0.111111 0.888889 0
2 0.444444 0 0.555556 0
3 0 0 0.888889 0.111111
4 0 0 0.777778 0.222222
5 0 0 1 0
6 0.222222 0 0.777778 0
7 0.888889 0 0.111111 0
8 0 0.111111 0.111111 0.777778 [+] Show/hide bicluster #125 motif PSSM #2. bicluster 125 motif PSSM #2 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0 0 1
2 1 0 0 0
3 0 1 0 0
4 0 0 1 0
5 0 1 0 0
6 1 0 0 0
7 0.333333 0 0 0.666667
8 1 0 0 0
9 0 0 0 1
10 1 0 0 0
11 1 0 0 0
12 0 1 0 0
13 0 0 0.333333 0.666667
14 1 0 0 0
15 0.333333 0 0 0.666667
16 0 0 1 0
17 0 0.666667 0 0.333333
18 0 0.666667 0 0.333333
19 0 0 0 1
20 0.333333 0 0.666667 0
21 0 0 0 1
22 1 0 0 0
23 0 0 0 1
24 0 0 1 0 |