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[+] Show/hide bicluster #124 rows and columns.
bicluster 124
Methanococcus maripaludis S2
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[+] Show/hide bicluster #124 rows (genes).
bicluster 124 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #124 rows (short gene names).
bicluster 124 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #124 rows (long gene names).
bicluster 124 long names
Methanococcus maripaludis S2
22
long_name
[+] Show/hide bicluster #124 rows (NCBI RefSeq gene IDs).
bicluster 124 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #124 gene upstream sequences.
bicluster 124 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #124 columns (arrays; conditions).
bicluster 124 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #124 ratios.
bicluster 124 ratios
Methanococcus maripaludis S2
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GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m
MMP0148 -0.973614837178278 -1.46907524648458 -1.08023121925765 -1.24215634325678 -1.06468193256049 -0.94725126117238 -0.967219228202423 -0.0679335163273495 -0.780378304608544 0.191378488987333 -0.390189152304272 0.094760222702466 -0.219249142723353 -0.787810478938149 -0.0929021791200647 0.763655912366932 0.811965045509366 1.38052638172416 1.67223922416116 1.58862726295311 1.44555790710821 1.45670616860261 1.21144441572564 1.27833398469209 1.08138136495755 -0.17279805316332 -0.821255263421372 -0.031586740900822 1.93979750002695 1.87476597464291 1.7279805316332 1.58676921937071 1.42697747128419 1.16499332616561 0.663321558917262 -0.821255263421372 -0.479375244259534 -0.867706352981404 -0.979188967925482 -0.702340474147689 -0.289854798854602
MMP0253 -2.52870967097954 0.492799947094053 0.51819354387415 0.340615509490177 0.253096169390731 0.143431249244076 0.220615982444243 -1.19782328737221 -0.523790133554334 -0.260914186377252 -0.488478439157412 -0.355078704769043 -0.0882792359923034 -0.366849269568017 -0.821977775128337 -0.653266346343046 0.0451204983960662 0.60618408714715 0.818054253528679 0.825901296727995 0.590490000748519 0.523790133554334 0.0804321927929876 0.178520232784436 0.0529675415953821 -1.10447133030371 -0.00196176079982897 0.100049800791277 1.68122900545342 0.904371728721153 0.880830599123206 0.441396179961517 0.237373056779305 0.276608272775884 -0.115743887189909 -0.0176558471984607 -0.0176558471984607 -0.62580169514544 -1.15940063269892 -0.649342824743388 -0.300149402373832
MMP0347 -0.228036617548388 -1.86148318162784 -0.123689602275071 -0.008961480993068 -0.639966138436052 -0.934402846331208 -1.00777099463744 -1.22276570930876 -0.138361661343513 0.0666096671247732 -0.298495511709362 0.668712944500363 0.655902236471095 -0.112740245284977 -0.554709672294719 0.611064758368658 0.784009316763774 0.98898064523206 1.14270914158328 1.0338181233345 0.995385999246694 1.62311069268082 1.47578755034424 1.68716423282716 1.48859825837351 -0.163983077402049 -0.644384628499594 0.284391703622327 -0.119145599299611 0.835252148880846 0.585443342310122 1.0914663094662 1.33486976202229 1.20035732771498 1.53984109049058 -0.573925734338621 -0.509872194192282 -1.15681294967031 -1.3617842781386 -1.47708065040201 -1.48348600441664
MMP0348 -0.653608324459524 -2.05650609560023 -1.15278988719545 -1.22366425625653 -1.00106735712381 -1.01034600700201 -1.32702900717927 -1.32551782658087 -1.16966773885614 0.199797321916199 -0.326302158908365 0.221885468057688 -0.286141893196566 -1.1977799248544 -0.721880776169582 0.426702823187862 0.633528191603625 1.24195621713738 1.50098993097848 1.34235688141687 1.14155555285788 1.26806038985005 1.0973792605749 1.11946740671639 0.874489785874418 -0.752000975453431 -1.24396423042297 -0.424694809902272 0.956818330583605 1.07328310114782 1.10541131371726 1.03111482215043 0.910634025015036 0.717864749598403 0.278109840054206 -1.24396423042297 -0.774089121594921 -1.36645304084395 -1.3965732401278 -0.972882436868324 -0.432726863044631
MMP0546 -0.114876002851524 -1.14558246813106 0.540610957535726 -0.00247445168434329 -0.592107063658391 -1.04448775060887 -1.31234199927645 0.266418804101764 0.423555494430691 -0.197711617818019 -0.149390842420897 0.168145681617332 0.257884264497702 -0.0251374199711549 0.720383114727296 0.803218729693791 0.540905948966558 0.264787232411576 0.154339745789583 0.389040654861318 0.485682205655562 0.630644531846927 0.464973301913938 0.879151376746411 0.872248408832536 0.561614852708182 -1.04677667122459 -0.156293810334771 -0.522151109770122 0.0024744516843433 0.0300863233398415 0.416652526516816 0.458070334000063 0.368331751119694 0.271690200325451 -0.998455895827466 -0.894911377119348 -1.41953693857381 -1.37121616317669 -1.42643990648769 -1.50927552145418
MMP0562 -0.235227977129327 -0.481755743341197 1.11136344464234 0.336743055422053 0.115172213595302 -0.502454249205037 -0.203899486811084 2.43667301929283 0.323689780494202 0.18295509332281 0.134703200578332 -0.130682209516293 -0.138724191640372 0.102535272082014 2.45883603443732 2.08890485672966 1.67474277733956 1.58225998291265 1.61442791140897 1.53400809016817 1.57823899185061 1.86775034831747 1.45760925998942 1.63051187565713 1.33295853706618 2.32212233832797 -0.468445458727633 0.0422204061514176 -0.0663463525236563 0.118619236330173 0.271416896687685 0.146766173764452 0.327710771556241 0.335752753680321 0.223165003943207 -0.436277530231315 -0.0663463525236563 -0.323689780494202 -0.150787164826491 -0.379983655362759 -0.432256539169275
MMP0563 -0.563176777451378 -1.3911899281028 -0.340672664251664 -0.272075460518834 -0.262079867026203 -0.305296106224279 -0.745102213389318 1.34995455416495 0.100916069947935 0.0162767854754734 0.0748732131871774 0.63479463354346 0.54364463488081 0.335301780794751 0.270194638892858 -0.0162767854754734 0.107426784138124 0.530623206500431 0.784541059917815 0.778030345727626 0.73896606058649 1.02543748495482 1.11658748361747 0.992883914003874 0.960330343052928 0.393898208506455 -0.54364463488081 -0.04883035642642 -0.901733915341223 -0.309258924033994 -0.328791066604562 0.0813839273773667 0.0423196422362307 0.328791066604562 0.478537492978916 -0.602241062592514 -0.517601778120052 -0.830116059249141 -0.64130534773365 -0.797562488298194 -0.953819628862738
MMP0613 0.0428264804275405 -1.41932954132175 -1.45768077950078 -0.00316887102270083 -0.0797221257109781 -0.748854311216313 -0.791085451611468 0.161129640335247 0.0725696874811704 -0.532208855942637 -0.294263199513598 -0.205033578352708 0.905379484982807 0.568289805041668 -0.849469731181355 0.0329120780763306 -0.0662319454357689 -0.274434394811178 -0.452893637132957 -0.185204773650288 0.12214169923722 0.23120012510053 0.0824840898323804 0.280772136856579 0.12214169923722 -0.353749613620858 0.379916160368679 1.01443791084612 0.518717793285618 -0.046403140733349 0.340258550963839 0.429488172124729 0.667433828553768 0.677348230904978 0.984694703792486 0.528632195636828 1.03426671554854 -0.294263199513598 -0.710668098264416 -0.978356961747085 -0.651181684157156
MMP0977 -1.0803515101081 0.0377636241898961 -0.0332258306251149 0.0762312664741132 -0.247275270804814 -0.223401908532849 -0.357002635341377 -1.02996109060235 -1.94822391435007 -0.69130525993067 0.122699201979037 0.29627368282743 -0.451892182898404 -1.37363252947263 -0.589554702191957 -0.58356937526615 0.463862836750017 0.356126952085497 1.0743661831823 1.0743661831823 0.828967779224224 1.00254226007262 0.882835721556484 1.03246889470165 0.85290908692745 -0.90677702925971 -1.59508962572748 -1.58910429880167 -0.58356937526615 0.356126952085497 1.05641020240488 1.82253204890813 1.42151514487908 1.27188197173392 1.09232216395972 -1.5292510295436 -0.888821048482291 -1.10429281781133 -1.51129504876618 -1.0743661831823 -0.541672086785504
MMP0978 -0.856094472952131 -1.62092034660489 -0.285347789083205 -0.734923762166659 -0.418722897513851 -0.395987735542932 -0.813518599941173 -0.143607225768261 -1.78838583616702 -1.58668818547149 0.605092952086584 0.663361162287515 0.116536420401861 -1.39843704482233 -0.327198411128301 -1.06227429366311 0.7978262627512 0.349609261205582 0.815754942813025 1.05779212364766 1.13398901391041 0.990559573415816 0.927809193199429 1.0846851437404 0.824719282843937 -0.775415412673919 -1.10261382380222 -0.555789081916567 -0.820237112828481 0.605092952086584 1.15639986398769 1.75252847604337 1.42084789489961 1.40740138485324 1.09364948377131 -0.959184383307623 -0.385466621329232 -0.345127091190126 -1.17432854404952 -1.42981223493052 -0.555789081916567
MMP0979 -1.03635852035247 -1.51074467555904 -0.509266047422082 -0.751848478284744 -0.433021690244464 -0.290591981457831 -0.47588180780625 0.563840486934908 -1.63686532653801 -1.76600657518006 0.309938996740924 0.364824027413796 -0.129141248642052 -1.58198029586513 -0.561764431592925 -1.37535429803785 0.613420931049746 0.390652277142207 0.707048336315234 0.874931959549901 0.629563587130002 0.852332241037542 0.564992962808977 0.855560772253593 0.616649462265797 -0.784533085500465 -1.28818395520447 -1.27204129912421 -0.87170342833385 0.810361335228875 0.826503991309132 1.29141248642052 0.968559364815389 0.984702020895645 0.765161898204157 -1.29141248642052 -0.487508213623746 -0.345452840117489 -1.30432661128472 -1.25589864304395 -0.42293758930272
MMP0980 -0.921061256597662 -1.4056897086065 -0.416722116201749 -0.649761940120284 -0.277604696088142 -0.208070181169269 -0.314380084090922 0.584584585043865 -1.61868880522486 -1.77621760652778 0.335954280329688 0.406681497241202 -0.133417250083082 -1.60904418473693 -0.551350804560206 -1.31006094961099 0.66708625041541 0.461334346672826 0.821400178222348 0.917846383101684 0.7120944793591 0.904986889117773 0.622078021471719 0.882482774645928 0.686375491391277 -0.75710270830279 -1.25862297367534 -1.31649069660294 -0.548135931064228 0.77317707578268 0.866408407166038 1.24576347969143 0.927491003589618 0.921061256597662 0.792466316758547 -1.24576347969143 -0.496697955128582 -0.249152695938286 -1.42258152197021 -1.17503626277991 -0.323094786345777
MMP0981 -0.889574005146256 -1.2977474454711 -0.322027694433636 -0.590704830543616 -0.204587355703484 -0.132805185344065 -0.169567069860365 0.0889899552017408 -1.5212848570556 -1.64637611485943 0.298792943990133 0.436393327574347 -0.157790146993848 -1.61197601896338 -0.51742751317986 -1.18353846098526 0.620902932834997 0.430138764684155 0.911740107228902 0.986794861911201 0.717848657632965 0.986794861911201 0.680321280291816 0.902358262893615 0.764757879309402 -0.714446244220893 -1.25546593422246 -1.38993903636158 -0.307899656358444 0.548975459597794 0.993049424801392 1.30890485075606 0.939885640234764 0.993049424801392 0.8398126339917 -1.28048418578323 -0.357936159479976 -0.304772374913348 -1.51190301272031 -1.08346545474219 -0.210953931560475
MMP0982 -0.776404892609655 -1.2854501509529 -0.284082635559355 -0.558557697708194 -0.165945428199204 -0.0310156464908772 -0.209841794968747 -0.645859426921224 -1.48104126573438 -0.681800935106798 0.225092174748177 0.505641841825616 -0.019573232586798 -1.47777906030325 -0.3262205431133 -0.473019787514286 0.66222770252 0.632867853639803 1.00149706735783 1.07652779227389 0.864484439250246 1.00475927278897 0.779667098040788 1.0373813271003 0.864484439250246 -0.691587551400197 -1.02107029994463 -0.9884482456333 -0.133750422676453 0.610032415621872 1.33750422676453 1.40274833538719 1.14503410632768 1.18418057150128 0.991710451064434 -1.02107029994463 -0.36862921371803 -0.574148155879409 -1.59195625039291 -0.965612807615369 -0.0978661629339901
MMP0983 -0.753214085756748 -1.15669916413202 -0.295833508091358 -0.493507893056949 -0.114488134981342 -0.0715661528133323 -0.111968801245393 -1.26862289651813 -1.67380907945944 -0.0898897468598588 0.0340961108778775 0.530039541828823 -0.0340961108778775 -1.59321827192991 -0.464946966516511 -0.111587271963963 0.573434592037031 0.582733531367361 0.93609322591991 1.02908261922321 0.815207014625617 1.04768049788387 0.796609135964956 1.00428544767566 0.815207014625617 -0.69122115688788 -1.23055963804703 -1.27395468825524 -0.142583736398397 0.601331410028021 1.44133559620118 1.47543170707906 1.23365928449048 1.23985857737736 1.01048474056255 -1.23985857737736 -0.387455805430426 -0.80900772173873 -1.76059917987586 -0.951591458137127 -0.170480554389387
MMP1100 -0.454610515094896 -1.20246479680301 0.243850137659782 0.019592124761325 -0.400277805688209 -0.714084958784448 -1.006323289143 0.449572442368522 -0.0259894540309364 -0.0675720942834101 0.217109058214295 1.09034450351624 1.0071792230113 0.2203077228491 -0.029188118665742 0.249095704562351 0.389836948493801 0.300274338719242 0.367446296050161 0.546571515599279 0.508187539981611 0.924013942506348 0.812060680288149 1.33024435112667 1.5765415280067 -0.182724021136414 -0.959999527394192 -0.502590484616981 -0.464206508999313 -0.291478618719807 -0.019592124761325 0.223506387483906 0.258691698466768 0.441015582650691 0.524180863155639 -0.908820893237301 -0.620941076104791 -0.867238252984828 -1.13912474694331 -1.48777919213713 -1.67969907022547
MMP1258 -0.206416959016997 -1.11449377919121 0.00264015203163846 0.214570082211372 -0.19355828753017 -0.534407318844148 -0.678167445390464 -1.20235268854547 0.51008858812507 -0.890055279225942 0.358899344232707 0.779599848976673 1.29890203452001 0.7598795128168 0.0630943018346062 0.411486907325703 1.68016186694423 1.18058001756077 0.865054639002791 0.825613966683045 0.56924959660469 0.694145058950555 0.122255310314226 0.549529260444817 0.773026403590049 -0.4759282198686 -0.60739712760109 0.345752453459458 0.753306067430175 0.490368251965197 -0.0486542697380098 -0.0683746058978831 -0.259004522109993 -0.114388723604254 -0.00264015203163847 -0.469354774481976 -0.16697628669725 -1.81691107873999 -1.48823880940877 -1.17271343085079 -1.3896371286094
MMP1468 -1.0043188310938 -1.67565020044609 -0.0701623251669057 -0.137741994069955 0.345986155338408 0.249324214059125 0.518178307853149 -1.21974897352722 -0.545598811355455 0.232835161533857 -0.670704271284094 0.587300631331668 -0.260636374851332 -0.907014584482635 -0.33013940814502 0.184183038228275 -1.2267285376336 0.844461854518316 0.594250934661037 0.420493351426815 0.0312763649821599 0.545598811355455 0.907014584482635 0.281487284839439 0.0660278816290042 -1.02516974108191 -0.893113977823897 -1.63679643406636 -0.0451769716408976 0.93481579780011 0.483046081391135 1.18502671765739 -0.830561247859578 1.30318187425666 0.87921337116516 -1.14332489768118 -0.253686071521963 -1.36573460422098 -1.44218794084404 -0.761058214565889 -0.413543048097447
MMP1633 -0.49650385147624 -1.84501775156964 -0.123974251388633 -0.214719373708925 -0.707323039662815 -1.34298371015894 -1.31300223642614 -0.533839717579905 0.112304442595816 -0.230519645328254 -0.348734848060692 -0.0118215202732438 0.171412043962035 0.0768398817760848 1.13486594623141 0.354645608197314 0.957543142132748 0.851149459673554 0.703380456258006 1.05802606445532 0.96345390226937 1.58999447675129 1.17033050705114 1.51906535511183 1.64319131798089 0.939810861722882 -0.260073446011364 0.0886614020493286 0.0118215202732438 0.49650385147624 0.384199408880424 1.12304442595816 1.38311787196952 1.73185272003022 1.69047739907386 -0.236430405464876 -0.112304442595816 -0.277805726421229 -0.762488057624225 -1.26490266923709 -1.56044067606818
MMP1634 -0.269925570963411 -1.45997261245184 0.115575279375376 0.0262843023898633 -0.571306180542482 -1.07129954881632 -1.38016146950533 -1.22974815034002 -0.311913993113275 -0.365899107305957 -0.299917301070456 0.00599834602140914 0.299917301070457 -0.245932186877774 0.773786636761778 0.233935494834956 0.743794906654732 0.851765135040097 0.68980979246205 0.929743633318415 0.89975190321137 1.54757327352356 0.947738671382643 1.48159146728806 1.45159973718101 0.647821370312186 -0.377895799348775 0.239933840856365 -0.245932186877774 0.227937148813547 0.389892491391593 1.00772213159673 1.38561793094551 1.65554350190892 1.59556004169483 -0.317912339134684 -0.233935494834956 -0.461872643648503 -1.00172378557532 -1.39161627696692 -1.63155011782328
Unanno_56 -0.519122228793675 -1.738210407136 -0.0971670319907155 0.01825940322751 -0.383024761813503 -0.607902483434655 -0.915092046330491 -0.846908358134628 0.397271237242197 0.289678482120576 0.471473137326073 0.423241902271554 0.608746652481245 0.85732301776223 0.0893333518941104 -0.392978998651085 -0.352167953604953 -0.400399188659473 -0.322487193571403 -0.103591588323968 0.0670727818689475 0.386140952229616 0.0707828768731414 0.478893327334461 0.49744380235543 -0.136982443361712 0.560515417426725 0.438082282288329 0.222896772045088 0.289678482120576 0.44921256730091 0.46776304232188 0.178375631994762 -0.01825940322751 -0.485731373755931 0.601326462472857 -0.25199538849172 -0.418949663680442 -0.626714983915296 -1.00514467434306 -1.33163303471212
Unanno_57 -0.334189632611978 -1.76479768432408 -1.13661800782924 -1.32627582345066 -0.915213119414879 -1.27712971528763 -1.35620877795482 -1.45186228772696 -0.509502226769081 -0.378017781151254 0.482109633932034 0.493066671066853 0.701250376628412 0.235576298398607 -0.405410373988301 0.0986133342133706 0.865605933650697 0.657422228089137 0.454717041094986 0.427324448257939 0.0931348156459611 0.684814820926184 0.219140742696379 0.493066671066853 0.531416301038719 -0.684814820926184 0.350625188314206 0.777949636572145 -0.323232595477159 -0.153398519887465 -0.158877038454875 0.421845929690529 0.41636741112312 0.72316445089805 0.61907259811727 0.443760003960167 -0.0931348156459611 -0.93134815645961 -0.964219267864067 -1.15048889915599 -1.26005927050418
[+] Show/hide bicluster #124 motif PSSM #1. bicluster 124 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 0 0.142857 0.857143 0
3 0 0.142857 0.857143 0
4 0.285714 0 0.714286 0
5 0 0.428571 0.428571 0.142857
6 0.142857 0 0.857143 0
7 1 0 0 0
8 0 0 0 1 [+] Show/hide bicluster #124 motif PSSM #2. bicluster 124 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.333333 0.666667 0
2 1 0 0 0
3 0 0 1 0
4 0 0.666667 0.333333 0
5 0.666667 0 0 0.333333
6 0 0 0 1
7 0.666667 0 0 0.333333
8 0 0 0 1
9 0 0 1 0
10 0 0 1 0
11 0 0 1 0 |