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[+] Show/hide bicluster #122 rows and columns.
bicluster 122
Methanococcus maripaludis S2
14x37
[+] Show/hide bicluster #122 rows (genes).
bicluster 122 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #122 rows (short gene names).
bicluster 122 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #122 rows (long gene names).
bicluster 122 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #122 rows (NCBI RefSeq gene IDs).
bicluster 122 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #122 gene upstream sequences.
bicluster 122 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #122 columns (arrays; conditions).
bicluster 122 arrays
Methanococcus maripaludis S2
37
[+] Show/hide bicluster #122 ratios.
bicluster 122 ratios
Methanococcus maripaludis S2
14x37
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0131 1.11646728360488 -0.205560306174454 0.586001691404054 0.806944958205561 0.70040793415797 -5.11655386004298 -4.65348100653893 0.489305075017326 0.422276982549199 0.0335140462340634 0.00670280924681269 0.0871365202085649 -0.0201084277404381 -0.180975849663943 -0.288220797612946 -0.00670280924681269 0.341843271587447 -0.10054213870219 -0.154164612676692 -0.27481517911932 -0.690389352421707 -0.154164612676692 -0.315032034600196 -0.288220797612946 -0.489305075017326 -0.0335140462340635 -0.0871365202085649 -0.00670280924681269 0.154164612676692 0.368654508574698 0.435682601042825 0.422276982549199 0.784228681877084 0.770823063383459 0.569738785979079 0.556333167485453 -0.0603252832213142
MMP0185 1.77755271288523 0.708073712020672 1.08792635503854 0.886681980030084 0.697065732019017 -5.08057055835051 -4.54381551322715 -0.206015213518554 0.53563955514824 -0.298722059601903 -0.0927068460833493 0.113308367435205 -0.0103007606759277 0.0103007606759277 0.13390988878706 0.113308367435205 -0.123609128111132 -0.484135751768602 -0.545940315824168 -0.206015213518554 -0.422331187713036 -0.0412030427037108 0.164812170814843 -0.257519016898193 -0.391428905685253 0.226616734870409 -0.0927068460833493 0.40172966636118 0.175112931490771 0.432631948388963 0.164812170814843 -0.247218256222265 0.247218256222265 0.381128145009325 0.751955529342722 0.422331187713036 0.339925102305614
MMP0222 1.83642535082803 0.206197140287695 0.477221217529152 0.455713530478112 0.437745083068383 -5.0486207779737 -4.8433448787777 0.592376932802065 0.33914709893248 -0.17635649144489 -0.122092955615693 -0.158268646168491 -0.140180800892092 -0.230620027274086 -0.34819102157068 -0.420542402676275 0.0949611877010942 0.366278866847078 0.230620027274086 0.104005110339294 0.411498480038076 -0.131136878253892 -0.556201242249267 -0.0497415745100971 -0.393410634761677 -0.0135658839572992 0.085917265062895 -0.0406976518718976 0.321059253656081 -0.0497415745100971 -0.0678294197864961 0.357234944208879 -0.330103176294281 -0.185400414083089 -0.0497415745100971 -0.17635649144489 0.122092955615693
MMP0291 1.56927632885271 0.095581387902283 0.118088458231415 0.427725426687188 0.876830877452878 -4.2783233265754 -4.7437205006803 -0.869673073886421 0 -0.294062118508358 0.0938496122899015 0.0750796898319213 0.0125132816386536 0.0125132816386536 -0.187699224579803 -0.231495710315091 -0.312832040966338 -0.118876175567209 -0.106362893928555 0.350371885882299 0.181442583760476 -0.344115245062972 -0.875929714705748 -1.17624847403343 -0.976035967814976 0.056309767373941 0 -0.0437964857352873 -0.131389457205862 0.506787906365468 0.506787906365468 0.056309767373941 -0.0625664081932677 0 0.381655089978933 0.400425012436913 0.306575400147012
MMP0329 0.389876185848272 0.674232325348282 0.684088327475059 0.406337802938641 0.466836883306297 -4.80234953877938 -5.52854815660108 0.602572433203605 0.191569270671666 0.184603115374515 0.114941562403 0.101009251808697 0.0661784753229392 0.121907717700151 0.0661784753229392 -0.421452395477666 -0.177636960077363 -0.0313476988371818 -0.156738494185909 -0.365723153100454 -0.379655463694757 -0.644369364986514 -0.261230823643181 0.0243815435400302 -0.0104492329457273 0.121907717700151 -0.344824687208999 -0.379655463694757 0.0592123200257877 -0.0801107859172424 0.00348307764857575 -0.0383138541343333 0.170670804780212 0.184603115374515 0.358756997803303 0.219433891860272 -0.0661784753229393
MMP0330 0.549265900019214 0.828526376846216 0.855737555351189 0.804774246456283 0.452873759213463 -5.34898755604587 -4.79865301243388 0.248965360570407 0.333230559532699 0.111076853177566 0.325570086899763 0.149379216342244 0.149379216342244 0.0957559079116951 0.103416380544631 -0.425156231127926 -0.00383023631646781 -0.2259839426716 -0.59368662905251 -0.256625833203343 -0.180021106873987 -0.425156231127926 -0.570705211153703 0.233644415304536 0.00383023631646781 -0.0497930721140814 -0.356211977431506 -0.126397798443438 0.15703968897518 -0.0651140173799526 -0.0421325994811458 -0.134058271076373 0.164700161608116 0.264286305836279 0.379193395330313 0.248965360570407 -0.0957559079116951
MMP0910 0.783090133016041 0.462497405878106 0.3990434117044 0.489508227722319 0.559822113158046 -5.35404718405569 -4.11305000179929 -0.192274299981107 -0.0996977851753887 0.0783339740663769 0.0783339740663769 0.135304137023742 0.206516840720448 0.11394032591473 0.192274299981107 -0.291972085156495 0.135304137023742 -0.313335896265507 -0.583944170312991 -0.370306059222872 -0.291972085156495 -0.80470355177278 -1.17500961099565 -0.904401336948169 -0.954250229535863 -0.669399414749039 -0.484246385137602 -0.370306059222872 -0.128182866654071 0.0498488925876944 0.00712127036967063 0.0498488925876944 0.370306059222872 0.548337818464638 0.662278144379368 0.505610196246614 0.235001922199131
MMP0938 1.55284367859311 1.01501444075858 0.708147028790113 1.0143090031083 0.70899355959468 -4.31008750568986 -4.62400934102971 -0.107797719524231 -0.126545149006705 -0.00468685737061872 0.210908581677842 0.173413722712893 0.173413722712893 0.00468685737061872 -0.14529257848918 0.107797719524231 0.0421817163355685 -0.398382876502591 -0.342140588055166 -0.398382876502591 -0.22028229641908 -1.12015891157787 -1.50448121596861 -0.8764423283057 -1.00767433468302 -0.717089177704664 -0.717089177704664 -0.135918863747943 0.00468685737061872 0.0234342868530936 0.201534866936605 0.201534866936605 0.407756591243829 0.642099459774764 0.651473174516002 0.351514302796404 0.0421817163355685
MMP1086 1.39743122111757 0.317188146284793 0.992455695294132 0.739924133994494 0.498492861373773 -4.88126196696897 -4.65056097340454 0.350306422780828 -0.485512410520797 0.227391888471766 0.0307286335772655 0.00614572671545297 0.153643167886328 -0.00614572671545314 0.0184371801463592 0.915713280602516 1.03862781491158 0.0798944473008906 -0.00614572671545314 -0.338014969349922 -0.424055143366266 -0.583844037968048 -0.0184371801463594 -0.694467118846204 -0.866547466878892 -0.522386770813516 -0.682175665415298 -0.362597876211735 0.448638050228079 -0.00614572671545314 -0.129060261024516 -0.104477354162703 0.251974795333578 0.31343206248811 0.264266248764485 0.264266248764485 -0.153643167886328
MMP1132 0.912869769323527 0.422038070260541 0.302068577404922 0.077386585877824 0.0919915676167689 -5.75091385701475 -4.48301889279814 0.524153617346019 -0.168942075012353 0.0303229365406788 0.25557903655715 0.368207086565385 0.333552301947467 0.316224909638507 0.142950986548914 -0.385534478874345 -0.0389866326951585 -0.636781667354255 -0.4894988327281 -0.394198175028824 -0.0909688096220364 0.333552301947467 -0.272906428866109 -0.142950986548914 -0.168942075012353 0.108296201930996 -0.116959898085475 0.229587948093711 -0.186269467321313 -0.00433184807723983 -0.177605771166833 -0.324888605792987 0.0649777211585974 0.160278378857874 0.0649777211585974 -0.116959898085475 0.134287290394435
MMP1133 0.953511916776425 0.160430833644113 0.0610013422064119 0.142114873093897 -0.0339799960754228 -5.18887619510774 -4.82622017621347 0.247723233888012 0.039114194824423 0.239031190593696 0.456332272951601 0.395487969891388 0.334643666831174 0.352027753419807 0.325951623536858 -0.169494844239166 -0.291183450359593 -0.73447765836972 -0.725785615075404 -0.34333571012549 -0.256415277182328 -0.751861744958352 -0.256415277182328 -0.221647104005063 -0.299875493653909 -0.517176576011815 -0.212955060710747 -0.265107320476644 -0.438948186362969 0.221647104005063 0.108650541178953 -0.0651903247073716 0.708401528486771 0.760553788252668 0.430256143068652 0.169494844239166 0.0999584978846365
MMP1491 1.10981171330692 -0.0489319847469025 0.242487918035694 0.372927684491012 0.430316713940015 -5.2231175209343 -4.5749459664118 -0.163513789934762 0.334460024866559 -0.126351564949589 -0.20810845991697 -0.133784009946624 -0.0891893399644159 -0.0445946699822079 0.0148648899940693 0.706082274718292 0.260135574896213 0.156081344937728 0.104054229958485 0.304730244878421 0.0148648899940693 -0.401352029839871 -0.616892934753876 -0.86216361965602 -0.564865819774634 -0.341892469863594 -0.133784009946624 -0.133784009946624 -0.193243569922901 0.20810845991697 0.11148667495552 -0.0148648899940693 0.267568019893248 0.356757359857663 0.505406259798357 0.230405794908074 -0.141216454943658
MMP1521 0.299476104403223 0.49217740341615 0.666222427872329 0.644075619781087 0.459920095978905 -5.3856335212704 -4.76696725976178 -0.0746314836321223 0.0773067724616703 0.101297023423848 0.237241778876189 0.125287274386026 0.0453197711787666 0.0133327698958629 -0.0186542313870408 -0.0826282339528482 0.453154037535789 -0.690381258328018 -0.27455024165027 -0.0506412326699445 0.261232029838367 -0.002660730745589 -0.35451774485753 -0.306537242933174 -0.338524244216078 -0.0346477320284927 0.0533165214994925 0.221248278234737 0.533121540743048 -0.0746314836321223 0.133284024706752 -0.0186542313870408 0.0693100221409443 0.253235279517641 0.669066296195388 0.868985054213537 0.0133327698958629
MMP1659 1.25611628118502 -0.140061543899308 0.407613457001197 0.482454439179981 0.194618566214787 -4.39245690756387 -4.83400043367389 -0.0425504803355236 0.334325202636256 0.261381522061073 0.431583443403168 0.34648248273212 0.310010642444529 0.310010642444529 0.395111603115576 0.431583443403168 -0.115494160910707 -0.358639762827984 -0.480212563786623 -0.34648248273212 -0.273538802156937 -1.19749208944259 -1.4649522515516 -0.869245526854267 -0.978661047717042 -0.261381522061073 -0.674729045320445 -0.626099924936989 0.443740723499031 0.151966001198298 0.334325202636256 0.50452712397835 0.0303932002396597 0.0911796007189788 0.34648248273212 0.419426163307304 0.249224241965209
[+] Show/hide bicluster #122 motif PSSM #1. bicluster 122 motif PSSM #1 Methanococcus maripaludis S2 10x4
POSITION A C G T
1 0.857143 0.142857 0 0
2 0.857143 0 0.142857 0
3 0 0.142857 0.142857 0.714286
4 0 0 0.714286 0.285714
5 0.142857 0.142857 0.428571 0.285714
6 0 1 0 0
7 0 0 1 0
8 0.142857 0 0.857143 0
9 0 0.142857 0 0.857143
10 0 0 1 0 [+] Show/hide bicluster #122 motif PSSM #2. bicluster 122 motif PSSM #2 Methanococcus maripaludis S2 11x4
POSITION A C G T
1 0 0.6 0.4 0
2 0 0 1 0
3 0.2 0.2 0.6 0
4 0.8 0 0 0.2
5 0.8 0.2 0 0
6 1 0 0 0
7 0 0 0 1
8 0 0.4 0 0.6
9 0 0.8 0.2 0
10 0 0.6 0.4 0
11 0 0.2 0.8 0 |