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[+] Show/hide bicluster #121 rows and columns.
bicluster 121
Methanococcus maripaludis S2
20x39
[+] Show/hide bicluster #121 rows (genes).
bicluster 121 genes
Methanococcus maripaludis S2
20
[+] Show/hide bicluster #121 rows (short gene names).
bicluster 121 short names
Methanococcus maripaludis S2
20
short_name
[+] Show/hide bicluster #121 rows (long gene names).
bicluster 121 long names
Methanococcus maripaludis S2
20
long_name
[+] Show/hide bicluster #121 rows (NCBI RefSeq gene IDs).
bicluster 121 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #121 gene upstream sequences.
bicluster 121 upstream sequences
Methanococcus maripaludis S2
20
upstream
[+] Show/hide bicluster #121 columns (arrays; conditions).
bicluster 121 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #121 ratios.
bicluster 121 ratios
Methanococcus maripaludis S2
20x39
GENES ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0001 0.289453988870552 0.0040964261724714 -0.305645251984695 -0.489931124833968 -0.609404211102612 3.8582364948611 5.54454741150472 0.0380608875300233 -0.0040964261724714 -0.160680734210309 -0.124545893893885 0.128397988321084 0.242824982656426 0.230780035884285 0.176577775409649 0.110330568162871 0.0862406746185888 0.423499184238547 0.242824982656426 -0.389534722880995 -0.491916770444196 -0.353399882564571 -0.52202913737455 -0.841220226836296 -0.154658260824238 0.0501058343021647 -0.25704030838744 0.423499184238547 0.483723918099253 0.63428575275102 0.857117268035635 0.646330699523162 0.712577906769939 0.327139610061416 -0.220905468071016 0.044083360916094 -0.931557327627356 -0.281130201931723 0.0320384141439527
MMP0002 0.297615892901004 0.0674978294079358 -0.326492192973049 -0.384602816692168 -0.63079815918217 3.69631252711072 5.79449341535584 0.205908598147673 0.28312432245305 -0.115823586458066 -0.173735379687099 0.0836503679974921 0.13512751753441 0.173735379687099 0.14799680491864 -0.0193039310763443 0.0643464369211477 0.373209334142657 0.43112112737169 -0.334601471989968 -0.392513265219001 -0.212343241839787 -0.398947908911116 -0.727114737208969 -0.186604667071328 0.0643464369211477 -0.212343241839787 0.572683288598214 0.797895817822231 0.630595081827247 0.842938323667035 0.804330461514346 0.842938323667035 0.675637587672051 -0.160866092302869 -0.0707810806132623 -0.495467564292837 -0.0707810806132623 0.0257385747684591
MMP0054 -0.862121022215353 -0.455900758228113 -0.543052498258384 -0.364624274727496 -0.896316435083458 3.41962416233265 6.01022636276984 0.216581364696963 0.260781643206548 -0.0397802506586258 -0.0663004177643765 0.0132600835528753 0.137020863379711 -0.0221001392547921 -0.234261476100797 -0.145860919081628 0.0839805291682103 0.154700974783545 0.216581364696963 -0.216581364696963 -0.137020863379711 -0.0397802506586258 -0.0574603620624596 -0.632063982687056 -0.119340751975878 -0.251941587504631 0.190061197591213 0.446422812946802 1.19782754760974 0.685104316898557 1.04754660067715 0.835385263831144 0.879585542340729 0.50830320286022 0.251941587504631 -0.243101531802714 -0.402222534437218 0.296141866014215 -0.243101531802714
MMP0055 -0.266110268313956 -0.161084699620386 -0.131245220371877 -0.56838183963351 -0.420711656930276 3.72051458770751 5.70084566941377 0.136589019915849 0.292690756962533 -0.26927549640553 -0.0663432382448408 -0.0273178039831697 0.0819534119495091 0.167809367325185 0.0507330645401723 -0.0975635856541776 0.0741483250971749 0.339521278076538 0.347326364928872 -0.448792494009217 -0.300495843814867 0.0897584988018433 -0.0117076302785013 -0.331716191224204 -0.238055148996193 -0.144394106768183 0.284885670110198 0.721970533840914 1.30735204776598 0.862462097182929 1.25271643979964 1.25271643979964 1.09661470275296 0.667334925874574 0.355131451781206 -0.245860235848527 -0.643919665317572 0.238055148996193 -0.17561445417752
MMP0630 -0.833792178995058 -0.575825117712247 -0.798876999002788 -0.809008636054116 -1.11054173924661 3.77875242481346 6.02166303249004 -0.0129448343397008 -0.00258896686794016 -0.220062183774913 -0.100969707849666 -0.0595462379626236 -0.0336565692832221 -0.0336565692832221 0.00258896686794016 -0.0750800391702645 -0.0440124367549827 0.194172515095512 0.00776690060382047 -0.147571111472589 -0.0388345030191024 -0.0388345030191024 0.132037310264948 0.0440124367549826 0.142393177736709 0.0543683042267432 -0.349510527171921 -0.0595462379626236 0.214884250039033 0.271841521133716 0.313264991020759 0.390933997058963 0.422001599474245 0.370222262115442 -0.359866394643682 -0.17346078015199 0.0802579729061448 -0.401289864530724 -0.178638713887871
MMP0631 -0.246473480408518 -0.364238709782221 -0.700571315305304 -0.864039214569592 -0.658407704121287 4.24904628789887 5.54916219423703 0.743902569746276 0.127699896168979 -0.265534704732322 -0.330398144056248 -0.208779195323887 -0.0182428423098542 -0.131753861126725 -0.160131615830942 -0.204725230366141 -0.143915755999961 0.070944386760544 -0.443909162873118 -0.727686709915294 -0.464178987661845 -0.318236249183012 -0.038512667098581 -0.0222968072675995 0.0790523166760347 -0.212833160281632 0.0668904218027986 0.261480739774576 0.257426774816831 0.508772602197044 0.788496184281475 0.934438922760308 0.824981868901183 0.881737378309618 0.070944386760544 -0.152023685915451 -0.111484036337998 -0.504718637239299 -0.0344587021408357
MMP0684 0.262977576145787 -0.215666311352936 -0.175088812057369 -0.395096843000816 -0.381449155550055 3.57065299394464 5.95991217106236 -0.259066489827993 -0.174060297853183 -0.275258145442242 -0.45741427110255 -0.267162317635117 -0.234779006406618 -0.0971499336854972 0.0202395695178119 0.0647666224569982 -0.433126787681175 -0.71243284702698 -0.566707946498734 -0.283353973249367 -0.275258145442242 0.0566707946498734 0.226683178599494 -0.0566707946498734 -0.0566707946498734 -1.09293675396184 -0.226683178599494 0.607187085534358 0.61123499943792 0.943163939530036 1.01602638979416 0.817678608519602 0.752911986062604 0.259066489827993 -0.210491522985244 0.412887218163363 -0.198347781274557 0.0364312251320615 0.61123499943792
MMP0686 -0.334078974776345 -0.682246513414649 -0.571356091352738 -0.495332289317193 -0.505688710728728 3.45460678097777 2.63380285990685 -0.166712104437226 0.414321182962469 -0.615229028044009 -0.556616020981759 -0.650906510603639 -0.416454482354639 -0.329809167566965 -0.365486650126596 -0.340002734012574 -0.202389586996857 0.681902302159697 0.414321182962469 0.105965797982806 0.100869014760002 0.190062721159078 0.223191812107306 0.0779334902573821 0.0193204831951321 0.472934190024719 -0.255905810836302 0.498418106138741 0.737966917610545 0.539192371921175 0.870483281403458 0.771096008558773 0.57996663770361 0.220643420495904 -0.199841195385455 -0.513293363587922 -0.210034761831063 -0.146324971546009 -0.47506748941689
MMP0787 -0.576144758863984 -0.308409742701357 -0.453704959926975 -1.08973890213842 -0.74380566229821 4.04130487357069 5.0611467559139 0.547738085578973 -0.0379620455351764 -0.580276981751981 -0.634508475373662 -0.363351007265259 -0.439275098335612 -0.504352890681628 -0.439275098335612 -0.482660293232956 0.526045488130301 0.309119513643579 0.341658409816587 -0.786356657514367 -0.677893670271006 -0.450121397059948 -0.211502825124554 -0.688739968995342 -0.47181399450862 0.72127886516835 -0.330812111092251 0.504352890681628 0.113886136605529 0.352504708540923 0.808049254963039 1.17682341159047 0.894819644757728 0.623662176649326 -0.374197305989595 -0.157271331502873 0.0271157468108403 0.569430683027645 -0.319965812367915
MMP0885 -0.221129783219491 -0.473898571760784 -0.640429674004265 -1.05963811746711 -1.34688369470864 2.95859918613008 4.68710241025709 -0.139744097032264 0.19442656978402 -0.176199078866768 0.00607583030575063 0.0243033212230025 0.0607583030575063 -0.0668341333632569 -0.048606642446005 -0.19442656978402 -0.0243033212230025 0.644038012409566 0.692644654855571 0.346322327427785 0.340246497122035 0.558976388129057 0.516445575988803 0.261260703147277 0.48606642446005 0.200502400089771 -0.346322327427785 0.413156460791042 1.22731772176163 0.546824727517556 0.716947976078573 0.656189673021067 0.668341333632568 0.29771568498178 -0.346322327427785 -0.206578230395521 -0.558976388129057 -0.364549818345037 -0.249109042535775
MMP1002 -0.451445514503141 -0.247047905154166 -0.0521981779161406 0.0427941068082493 -0.0899031820961162 2.90162397002321 5.26803864761291 -0.226264045495265 0.109091593363789 -0.581821831273539 -0.634347413263512 -0.553538825586631 -0.581821831273539 -0.577781401889695 -0.424245085303622 -0.282830056869082 0.0121212881515321 0.424245085303622 -0.185859751656825 0.206061898576045 -0.0161617175353761 0 0.0121212881515321 0 -0.254547051182173 0.323234350707522 -0.343436497626742 -0.359598215162118 -0.339396068242898 0.181819322272981 0.7434390066273 0.630306983879667 0.303032203788302 -0.339396068242898 -0.359598215162118 -0.363638644545962 0.0363638644545962 -0.0363638644545962 -0.367679073929806
MMP1003 -0.231525394988712 -0.17424293965872 -0.0740568586424265 0.0674610753050603 0.0575065003413302 3.01052181697136 5.07897727666561 -0.346154338399829 -0.102492625336262 -0.585948405224292 -0.609154282658917 -0.585948405224292 -0.473786664290269 -0.435110201899226 -0.357757277117142 -0.214654366270285 0.0212720543150733 0.346154338399829 -0.0444779317496987 0.129566149009992 0.0135367618368648 -0.0135367618368648 -0.0908896866189495 -0.102492625336262 -0.311345522247891 0.214654366270285 -0.203051427552972 -0.16437496516193 -0.431242555660122 0.288139644813266 0.787066009657712 0.713580731114731 0.41963961694281 0.0444779317496987 -0.210786720031181 -0.384830800790871 0.0174044080759691 -0.0135367618368648 -0.361624923356246
MMP1004 -0.558893624900646 -0.187488032421383 -0.218843717623471 0.0322812357282851 -0.0339513634215566 2.71288503342462 5.25481956082774 -0.137396415050512 -0.170817164657394 -0.449323411381405 -0.415902661774524 -0.40847582852855 -0.453036828004392 -0.430756328266471 -0.334207496068814 -0.122542748558565 0.08169516570571 0.605286909546852 0.285933079969985 0.0854085823286968 -0.0445609994758419 0.0185670831149341 0.0111402498689604 0.129969581804539 -0.144823248296486 0.620140576038799 -0.167103748034407 -0.16339033141142 -0.219091580756222 0.453036828004392 0.902360239385797 0.64242107577672 0.8169516570571 0.701835741744509 -0.170817164657394 -0.178243997903367 -0.0297073329838946 -0.0111402498689605 -0.196811081018301
MMP1005 -0.253950962830135 -0.206772145420999 -0.0160648847543941 0.0999425834224635 0.0352027634968671 2.76009395427202 5.04496404831017 -0.0557243152986729 -0.839347499186261 -0.518932686218892 -0.498036067981889 -0.494553298275722 -0.456242831507885 -0.459725601214052 -0.35524251002904 -0.149759097365184 0.188069564133021 0.445794522389384 0.00696553941233412 0.0557243152986729 -0.00696553941233412 -0.0104483091185012 0.0278621576493365 -0.0417932364740047 -0.167172945896019 0.452760061801718 -0.181104024720687 -0.264690497668696 -0.11841417000968 0.752278256532085 1.04134814214395 0.964727208608275 0.53286376504356 -0.174138485308353 -0.195035103545355 -0.160207406483685 -0.114931400303513 -0.0313449273555035 -0.156724636777518
MMP1006 -0.338862242646055 -0.235640728344694 -0.186024840329614 0.00353855171347575 0.00829554093992318 3.13777948486129 4.93244251554239 -0.00169917960067135 -0.16482042126512 -0.616802195043698 -0.51824977820476 -0.501257982198047 -0.382315410151053 -0.41629900216448 -0.297356430117485 -0.154625343661092 0.181812217271834 0.50465634139939 0.365323614144339 0.00169917960067135 -0.0866581596342386 0.0424794900167837 -0.00169917960067135 0.0254876940100702 -0.219194168486603 0.392510487755081 -0.0696663636275251 -0.263372838104058 -0.0356827716140982 0.830898824728288 1.05519053201691 1.02800365840616 0.640590709453097 0.208999090882575 -0.0832598004328959 -0.188608935674519 -0.117243392446323 -0.015292616406042 -0.181812217271834
MMP1007 -0.282082038158649 -0.139270438023525 -0.0857098841198261 0.0216594239799662 -0.0851638527108154 2.19833257078244 5.20998448727613 0.183036131596833 -0.225909459718613 -0.585385826278159 -0.463361738546937 -0.489745325083417 -0.466659686863997 -0.456765841912817 -0.364423289035135 -0.229207408035673 0.281974581108634 0.578789929644039 0.436978152010457 -0.0972894753532714 -0.100587423670331 -0.0247346123779504 0.064309992182671 0.0577140955485509 -0.196227924865073 0.384210978937496 -0.0939915270362114 -0.400700720522796 0.103885371987392 0.928372451252404 1.24497548969017 1.17242062671485 0.690920172424081 -0.126971010206812 -0.0742038371338511 -0.0873956304020913 -0.206121769816253 0.00164897415853003 -0.153354596743292
MMP1008 -0.351962739023031 -0.0832761957822334 0.00560360551137844 0.204744401954435 0.0989757339988165 1.27152948454292 6.38601333796572 -0.105784577200425 -0.00377802061430089 -0.245571339929558 -0.313575710986974 -0.17001092764354 -0.068004371057416 -0.00377802061430089 -0.00755604122860179 -0.0944505153575223 0.219125195629452 0.166232907029239 0.0264461443001062 -0.287129566686868 -0.136008742114832 -0.0755604122860178 -0.102006556586124 0.0302241649144071 -0.0264461443001062 -0.657375586888355 0.249349360543859 0.483586638630514 0.347577896515682 0.865166720674904 1.02384358647554 1.03139962770414 0.714045896102868 0.396692164501594 0.264461443001062 -0.283351546072567 -0.188901030715044 -0.0642263504431151 -0.173788948257841
MMP1599 0.256921789922702 0.0943489543870603 0.0720699879985769 -0.399862259654376 -0.475483451350609 3.33472970289096 5.78159718488582 -0.477887572626592 0.249516520220964 -0.164934648959621 0.114185526202814 0.207225584590292 0.114185526202814 -0.0888109648244111 -0.0718945905721423 -0.325640204356174 0.308723830103905 0.816215057671968 0.613218566644743 -0.021145467815336 -0.317182017230039 -0.122643713328949 -0.0972691519505455 -0.460971198374324 0.021145467815336 0.249516520220964 -0.164934648959621 -0.325640204356174 1.18837529122188 0.24105833309483 0.537094882509533 0.570927631014071 0.714716812158355 0.367931139986845 -0.0888109648244111 -0.554011256761802 -0.359472952860711 0.021145467815336 -0.401763888491383
Unanno_36 0.814822894925211 0.436956835622564 0.385701995994153 -0.0610682851837253 0.354050340198914 3.93531139830234 5.20632725445116 0.98005080193416 -0.183894742084776 -0.677165344382764 -0.63822292841187 -0.417549237910139 -0.456491653881032 -0.413222302802262 -0.369952951723491 -0.50408794006768 -0.581972772009468 -0.40024149747863 -0.737742435893043 -0.798319527403322 -0.703126955030026 -0.22283715805567 -0.279087314458072 0.253125703810809 0.0108173377696927 0.144952326113882 -0.0194712079854469 -0.0324520133090782 -0.335337470860474 0.106009910142989 0.806973397619076 1.07524337430746 0.668511474167009 0.525722615607066 0.0151442728775698 -0.300721989997457 -0.0108173377696927 -0.646876798627624 -0.183894742084776
Unanno_55 -1.38471599667769 -1.00771455294796 -0.238932665891376 -0.66697640642077 -1.21715219734863 3.12493284273743 4.51764869880555 0.0477310442483017 -0.229563593765642 -0.297750799834644 -0.234109407503575 -0.0522768579862352 0.0340936030345012 0.0795517404138362 0.120464064055238 0.0159103480827672 -0.275021731144976 0.706874036248658 0.502312418041651 -0.0159103480827672 0.0659142992000357 0.375029633379513 0.275021731144976 0.0340936030345012 0.211380338813907 0.234109407503575 -0.193197083862174 0.143193132744905 -0.0886433678897031 0.338663123476045 0.602320320276188 0.515949859255452 0.520495672993385 0.134101505269038 -0.252292662455309 -0.288659172358777 -0.993260301738469 -0.743240546152126 -0.211380338813907
[+] Show/hide bicluster #121 motif PSSM #1. bicluster 121 motif PSSM #1 Methanococcus maripaludis S2 23x4
POSITION A C G T
1 0 0.4 0.6 0
2 0 0.4 0 0.6
3 0.4 0 0 0.6
4 0.2 0.2 0.2 0.4
5 0 0.2 0.8 0
6 0 0.2 0.6 0.2
7 0 0 0 1
8 0 0.2 0.8 0
9 0.2 0.2 0.4 0.2
10 0 0 0 1
11 0.4 0.6 0 0
12 1 0 0 0
13 0.2 0 0 0.8
14 0.4 0.2 0.4 0
15 0 0.2 0.2 0.6
16 0 0 0.8 0.2
17 0 0 1 0
18 0.4 0.6 0 0
19 1 0 0 0
20 0.8 0 0.2 0
21 0.6 0.2 0 0.2
22 0 0 0.2 0.8
23 0.2 0.8 0 0 [+] Show/hide bicluster #121 motif PSSM #2. bicluster 121 motif PSSM #2 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 1 0 0 0
4 0 0 1 0
5 0 0 1 0
6 0 0 1 0
7 0 0 0 1
8 0 1 0 0
9 0 0 0 1
10 0 0 0 1
11 0 0 0 1
12 0 0 1 0
13 1 0 0 0
14 0 0 1 0
15 0 1 0 0 |