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[+] Show/hide bicluster #120 rows and columns.
bicluster 120
Methanococcus maripaludis S2
18x40
[+] Show/hide bicluster #120 rows (genes).
bicluster 120 genes
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #120 rows (short gene names).
bicluster 120 short names
Methanococcus maripaludis S2
18
short_name
[+] Show/hide bicluster #120 rows (long gene names).
bicluster 120 long names
Methanococcus maripaludis S2
18
long_name
[+] Show/hide bicluster #120 rows (NCBI RefSeq gene IDs).
bicluster 120 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #120 gene upstream sequences.
bicluster 120 upstream sequences
Methanococcus maripaludis S2
18
upstream
[+] Show/hide bicluster #120 columns (arrays; conditions).
bicluster 120 arrays
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #120 ratios.
bicluster 120 ratios
Methanococcus maripaludis S2
18x40
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_minus30m
MMP0013 -0.0904069547868886 1.06451659257703 0.162018526213779 0.733328475204694 1.12166853129036 0.789643022976495 0.753635212491007 0.952750215831056 0.173859528436324 0.271220864360666 0.159950766161418 0.18776829071123 0.1182244793367 0.25731210208576 0.521578585308972 0.493761060759161 0.646757445783126 0.479852298484255 0.535487347583878 0.00695438113745297 -0.452034773934443 -0.18776829071123 -0.660666208058032 -1.41173937090295 -1.46737442000258 -1.59255328047673 -1.14747288767974 -1.50910070682729 -1.74554966550069 -0.911023929006339 -1.16138164995465 -0.63284868350822 -1.00838526493068 -0.56330487213369 -0.146042003886512 -0.0625894302370767 -0.1182244793367 -0.18776829071123 -0.00695438113745297 -1.00838526493068
MMP0073 0.136917102641012 1.94332522897745 -0.136362164373965 0.412211559739466 0.938714697408602 1.18534684873993 1.31285101540807 0.622751982980085 0.0485834880339073 0.30475097039451 0.0485834880339073 -0.287084247473089 -0.587418537137243 -0.52558500691227 0.0574168494946178 -0.172250548483853 0.446084753765877 0.463751476687297 0.808252573655004 -0.976086441408502 -0.605085260058664 -0.437251392305166 -1.0555866945549 -1.04675333309419 -0.808252573655004 -0.375417862080193 -0.808252573655004 -1.64742191242249 -1.70042208118676 -1.32058753837621 -1.61208846657965 -0.976086441408502 -1.20575383938697 0.234084078708826 1.02908661017276 0.52558500691227 0.552085091294402 0.0132500421910656 0.216417355787405 -1.18808711646555
MMP0133 0.313402012966657 1.60112677794501 0.533142103459038 0.63025522615159 0.803968268948314 0.810979106481351 0.800333018366239 0.313402012966657 -0.0201267347776752 0.0718811956345544 -0.19839209995137 -0.10638416953914 -0.33065349991895 -0.664182247663282 -0.353655482522007 0.0201267347776752 0.63542976940946 1.02071297801067 1.08971892581984 0.0603802043330257 0.278899039062071 0.10638416953914 -0.324903004268186 -1.89478831692685 -1.47500213442106 -0.85969909978927 -0.439912917283473 -0.842447612836977 -0.85969909978927 -1.31973875185042 -1.70502196045163 -0.296150526014364 -0.15813863039602 0.209893091252899 1.01496248235991 0.974709012804557 1.18172685623207 0.911453560646149 0.911453560646149 -0.10638416953914
MMP0223 0.178357214032757 1.37788585492559 0.647093438480503 0.431733384673376 0.504514344685757 0.436953335530271 0.192659867291992 0.604432780888789 0.4161668327431 0.51525417387241 0.0693611387905165 0 -0.0297262023387929 -0.693611387905168 -0.396349364517239 0.0693611387905165 0.683702653792236 0.277444555162067 0.227900884597412 -0.505345439759479 -0.356714428065515 -0.287353289274998 -0.178357214032757 -1.4070402440362 -1.61512366040775 -1.54576252161723 -0.723337590243961 -0.782789994921546 -1.36740530758447 -1.34758783935861 -1.68448479919826 -0.148631011693965 -0.217992150484481 0.644067717340513 1.02059961363189 0.0495436705646549 0.435984300968962 0.237809618710343 0.544980376211203 -0.108996075242241
MMP0340 0.250939482589964 0.800728172822459 0.313958026810397 0.487758851434074 0.718389234188741 0.85401314513154 0.964418217165162 0.478715320633163 0.247078875165503 0.347454668201489 0.0965151856115248 -0.111957615309369 -0.250939482589964 -0.35131527562595 0.220054623194276 0.166006119251823 0.416945601841787 0.335872845928106 0.189169763798588 -0.293406164259035 -0.200751586071971 -0.200751586071971 -0.366757705323794 -0.953570033841864 -0.675606299280673 -0.710351766100822 -1.088691293698 -1.34349138371242 -1.47861264356856 -1.1079943308203 -1.37437624310811 -0.335872845928106 -0.38992134987056 0.42852742411517 0.806866951712347 0.46713349835978 0.416945601841787 0.208472800920893 0.393781957295021 -0.362897097899333
MMP0341 0.0919329570201745 0.809638909599578 0.135301701285902 0.25022807147503 0.529971928728112 0.849767047774663 0.818479402364258 0.137899435530262 0.326872736071732 0.449450012098631 0.0561812515123288 -0.204295460044832 -0.31665796306949 -0.592456834130013 0.178758527539228 0.0306443190067248 0.270691484559403 0.286013644062765 0.0102147730022416 -0.520953423114322 -0.204295460044832 -0.107255116523537 -0.63331592613898 -0.837611386183812 -0.939759116206228 -0.50563126361096 -0.69460456415243 -1.22577276026899 -1.50157163132952 -0.173651141038107 -0.0715034110156913 -0.648638085642342 -0.69460456415243 0.321765349570611 0.842718772684933 0.50563126361096 0.398376147087423 0.0919329570201745 0.260476711557161 -0.612886380134497
MMP0955 0.149235037526904 1.96761849663267 0.325731753423452 0.737911496411516 0.971330267332409 1.04770144702184 1.11611729238456 0.261161315672081 0.130580657836041 0.0808356453270728 -0.0621812656362099 -0.273597568799323 -0.354433214126396 -0.404178226635364 0.335778834435533 -0.0870537718906938 0.335778834435533 0.665339542307446 0.522322631344163 -0.621812656362099 -0.497450125089679 -0.540977011035026 -0.491231998526058 -0.976245870488495 -0.851883339216075 -1.38042409712386 -1.69133042530491 -1.93383736128613 -1.90274672846802 -1.11304465488816 -1.14413528770626 -0.391741973508122 -0.435268859453469 0.298470075053807 1.1254809080154 0.771047693889002 0.789702073579865 0.491231998526058 0.596940150107615 -0.335778834435533
MMP1101 0.978966219319591 1.29196083030641 0.640959969151774 0.871545630792173 0.992559998437583 1.31813880359239 0.68610522547545 0.906064479583026 0.343679630186665 0.0312436027442423 -0.208290684961615 -0.124974410976969 -0.218705219209696 -0.0312436027442423 0.28119242469818 0.239534287705857 0.447824972667473 0.0520726712404038 0.156218013721211 -0.895649945334945 -0.479068575411715 -0.583213917892522 -0.83316273984646 -0.822748205598379 -0.593628452140603 0.312436027442423 -0.68735926037333 -1.52052200021979 -1.72881268518141 -1.18725690428121 -1.45803479473131 -0.760261000109895 -0.83316273984646 -0.468654041163634 0.291606958946261 0.499897643907876 0.385337767178988 0.145803479473131 0.166632547969292 -0.853991808342622
MMP1113 0.222765224347556 2.00041021013329 0.813862448148372 0.782853193542425 1.03174682184185 1.2899295646991 1.26042296551541 -0.0313575889143187 0.386129890015905 0.213689409588204 -0.0404334036736714 -0.0767366627110822 -0.421617623566484 -0.739271140143828 -0.594058103994185 -0.603133918753538 1.5387583644537 1.47522766113823 1.0395885526893 -0.385314364529073 -0.0767366627110822 -0.33993529073231 -1.03877302720247 -2.04618846549061 -1.02062139768376 0.186461965310146 -0.022281774154966 -0.920787435330882 -1.30197165522369 -1.92820287361903 -1.82836891126615 -1.08415210099923 -0.457920882603895 0.667480147555838 1.52060673493499 1.12127088552347 1.15757414456088 0.731010850871306 0.740086665630659 -0.430693438325837
MMP1114 0.115008744640572 1.62381585489208 0.452325000774933 0.562679700922228 0.825908114444253 1.05473182733212 0.93388260798856 0.208453349661037 0.0718804654003575 -0.0575043723202859 -0.1006326515605 -0.136572884260679 -0.258769675441287 -0.495975211262466 -0.510351304342538 0.0431282792402145 0.769120979783825 0.812249259024039 0.654112235143253 -0.309086001221537 0.0359402327001788 -0.194077256580965 -0.761932933243789 -1.55261805264772 -0.920069957124575 -0.718804654003574 -0.495975211262466 -0.876941677884361 -0.876941677884361 -1.02070260868508 -1.25790814450626 -0.790685119403932 -0.345026233921716 0.301897954681501 0.999138469064969 0.618172002443074 0.57504372320286 0.301897954681501 0.352214280461752 -0.33783818738168
MMP1115 0.00742045180744206 1.80866116842084 0.380271456345803 0.655584666021572 0.977695533816216 1.12467816619592 0.791398405363305 0.230034006030704 0 0.148409036148841 -0.0222613554223262 -0.126147680726515 -0.274556716875356 -0.408124849409313 -0.549113433750713 0.28939762049024 0.378443042179545 0.920136024122816 0.704942921706996 -0.207772650608378 0 -0.185511295186052 -0.868192861470721 -1.59539713860004 -0.986920090389794 -1.2169540964205 -1.51377216871818 -1.53603352414051 -1.37278358437678 -0.526852078328386 -0.541692981943271 -0.823670150626069 -0.393283945794429 0.170670391571167 0.808829247011185 0.230034006030704 0.311658975912567 0.0445227108446524 0.163249939763725 -0.393283945794429
MMP1222 0.403376628032374 1.00157052114669 0.683951753688209 0.635935924864765 0.621491492921459 0.564269317586528 0.521412211820674 0.408649525130837 0.271554200570814 0.23991681798004 0.640656997463182 -0.108094390518479 -0.287372891866201 -0.192460744093878 0.19773364119234 0.00263644854923121 0.435014010623149 0.224098126684652 0.0817299050261673 -0.682840174250882 -0.556290643887784 -0.519380364198547 -0.00263644854923121 -0.261008406373889 -0.456105599016998 -1.07830745663556 -1.43159156223254 -1.48432053321717 -1.35777100285407 -1.16267381021096 -1.0730345595371 0.0342738311400056 -0.245189715078502 0.0975485963215545 0.3717392454416 0.166096258601566 0.261008406373889 0.134458876010791 0.361193451244675 -0.176642052798491
MMP1253 0.0436570096830148 2.18601943006494 0.747546922378024 1.01360081108233 1.99925602324662 1.76999991979041 1.3165985225829 1.0720221266607 0.354106856317786 0.460823991098489 0.237688163829747 0.247389721537084 0.101866355927034 0.28619595236643 -0.0533585673903513 0.451122433391152 0.0436570096830148 0.189180375293064 -0.00485077885366831 -0.1988819330004 -0.111567913634371 -0.140672586756381 -0.907095645635973 -1.32426262705145 -1.13993303061205 -1.08172368436803 -0.819781626269944 -0.868289414806627 -0.897394087928636 -0.877990972513963 -0.868289414806627 -0.936200318757983 -1.22724704997808 -0.422017760269143 -0.0727616828050246 -0.0727616828050246 -0.0533585673903513 0.063060125097688 -0.0727616828050246 -0.645153587537885
MMP1254 0.398616481113553 1.96981011591971 0.474918588447663 0.926164886098379 1.27652021946926 1.31015054788914 1.43914572590202 0.723803610443031 0.251757777545402 0.167838518363601 -0.0314697221931753 0.0314697221931753 -0.146858703568151 -0.440576110704454 0.0524495369886254 0.377636666318103 0.262247684943127 0.0944091665795258 0.104899073977251 -0.608414629068055 -0.493025647693079 -0.629394443863505 -0.975561387988433 -2.43365851627222 -1.32172833211336 -1.01752101757933 -0.912621943602083 -1.40564759129516 -1.79377416501099 -2.22386036831772 -1.70985490582919 -0.944091665795258 -0.608414629068055 -0.167838518363601 0.503515555090804 0.461555925499904 0.692333888249856 0.493025647693079 0.608414629068055 -0.493025647693079
MMP1255 0.179965583667499 1.78199303869096 -0.0823411216356785 0.381710858011004 0.728288541150382 1.04264633228654 0.883970487729452 0.340987421685787 0.340987421685787 0.132606219544473 -0.0473593641230259 0.0378874912984208 -0.0757749825968415 -0.454649895581049 0.227324947790525 -0.23679682061513 0.350459294510392 0.265212439088945 0.047359364123026 0 -0.378874912984208 -0.407290531458023 -0.947187282460519 -1.91331831057025 -1.86595894644722 -0.454649895581049 0.47359364123026 0 -0.824052935740652 -1.70493710842893 -2.01750891164091 -0.947187282460519 -0.27468431191355 0.265212439088945 0.909299791162099 1.35447781391854 1.41130905086617 1.15556848460183 0.975602900934335 -0.359931167334997
MMP1314 0.423726117517896 1.43959629693479 1.03628620608215 1.0072882562135 0.850552507956928 0.806596751784855 0.635545559922243 0.259113093446195 0.253016314776873 0.313984101470095 0.161564634737039 -0.0640161760278835 -0.0579193973585613 -0.179854970745006 0.161564634737039 0.155467856067717 0.759048944330619 0.887081296386386 0.618823034936207 0.106693626713139 0.289596986792806 0.289596986792806 -0.783436059007908 -0.935855525740964 -0.740758608322652 -1.00901686977283 -0.862694181709097 -1.03950076311944 -1.27727513122301 -0.954145861748931 -0.850500624370453 -0.740758608322652 -0.43591967485654 0.00304838933466112 0.38104866683264 0.0152419466733056 -0.131080741390428 -0.350564773486029 -0.289596986792806 -0.405435781509929
MMP1316 0.0538475933160294 1.63705205959832 0.65387724887181 0.714609745211473 0.917231504320688 0.883299113127353 0.911720188785434 -0.118464705295265 0.0394882350984216 0.104105347077657 -0.0107695186632059 -0.269237966580147 -0.269237966580147 -0.455909623409049 0.1830818172745 0.0107695186632059 0.563604810041108 0.656940638455559 0.326675399450579 -0.369753474103402 -0.118464705295265 -0.254878608362539 -0.290777003906559 -1.36054919111834 -0.606682884693932 -0.75027646687001 -1.22413528805107 -1.38926790755356 -1.56875988527366 -1.16669785518064 -1.21695560894227 -0.305136362124167 -0.233339571036128 0.793354541522834 1.19541657161585 0.865151332610873 0.965666840134128 0.714378071325991 0.707198392217187 -0.175902138165696
MMP1532 -0.0745334961785736 2.40725720858619 -0.127240282268846 0.807512077100683 1.34375203004314 1.3515186267454 0.900020805085951 0.40706755605221 -0.143333646497257 0.223600488535721 -0.0630668044587931 -0.246533871975282 -0.269467255414843 -0.326800714013746 0.0860001878983541 0.292400638854404 0.269467255414843 0.636401390447821 0.62493469872804 -0.349734097453307 0.0286667292994514 -0.0860001878983542 -0.854268533123651 -1.23266935987641 -0.430000939491771 -0.716668232486285 -1.9436042465028 -1.78307056242588 -1.17533590127751 -0.62493469872804 -0.716668232486285 -0.785468382804968 -0.235067180255501 0.372667480892868 1.10653575095882 0.269467255414843 0.20066710509616 0.303867330574185 0.693734849046723 -0.131866954777476
[+] Show/hide bicluster #120 motif PSSM #1. bicluster 120 motif PSSM #1 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 0 1 0
2 0 1 0 0
3 0 0 1 0
4 1 0 0 0
5 0.5 0 0.5 0
6 0 0 1 0
7 0 0 1 0 [+] Show/hide bicluster #120 motif PSSM #2. bicluster 120 motif PSSM #2 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0 0 0.5 0.5
4 0 1 0 0
5 1 0 0 0
6 0 0 1 0
7 0 1 0 0 |