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[+] Show/hide bicluster #119 rows and columns.
bicluster 119
Methanococcus maripaludis S2
21x39
[+] Show/hide bicluster #119 rows (genes).
bicluster 119 genes
Methanococcus maripaludis S2
21
[+] Show/hide bicluster #119 rows (short gene names).
bicluster 119 short names
Methanococcus maripaludis S2
21
short_name
[+] Show/hide bicluster #119 rows (long gene names).
bicluster 119 long names
Methanococcus maripaludis S2
21
long_name
[+] Show/hide bicluster #119 rows (NCBI RefSeq gene IDs).
bicluster 119 NCBI RefSeq IDs
Methanococcus maripaludis S2
18
[+] Show/hide bicluster #119 gene upstream sequences.
bicluster 119 upstream sequences
Methanococcus maripaludis S2
21
upstream
[+] Show/hide bicluster #119 columns (arrays; conditions).
bicluster 119 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #119 ratios.
bicluster 119 ratios
Methanococcus maripaludis S2
21x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m
Antisense_11 0.207943637345411 -0.124766182407247 0.99975504824574 0.0282453793535382 3.87250035949889 -0.56144782083261 -0.218340819212682 0.0103971818672706 -0.0103971818672706 0.0935746368054351 -0.613433730168963 -0.904554822452539 -1.01892382299251 -0.686214003239857 -0.18714927361087 -0.0623830912036233 -0.135163364274517 0.415887274690822 1.00852664112524 2.0482448278523 0.790185821912563 0.436681638425364 0.571845002699881 1.10210127793068 1.25805900593974 2.29777719266679 2.29777719266679 2.08983355532138 2.36016028387042 0.998129459257974 -0.457476002159905 -0.946143549921621 -0.873363276850727 -0.519859093363528 -0.634228093903504 -0.280723910416305 -0.18714927361087 -0.36390136535447 -0.259929546681764
Antisense_12 -0.0878069964053994 -0.0878069964053994 0.860477128975967 1.20130976719577 2.30002560890498 0.345629805743887 0.0179092968017435 -0.320382841461114 0.440774469630316 0.113053960688172 -0.172380030971114 -0.711533126327543 -1.4938336960604 -0.817249419534686 -0.436670763988971 0.52534750419603 0.165912107291744 0.853068013138173 1.10678711683532 1.52965228966389 1.13850200479746 -0.0878069964053994 -0.0772353670846851 0.768494978572459 0.842496383817459 2.96739387728103 2.25909471279318 2.54452870445246 2.43881241124532 1.12793037547675 -1.28240110964612 -1.52554858402254 -1.03925363526969 -0.404955876026828 -1.1238266698354 -0.827821048855401 -0.4578140226304 -0.933537342062543 -0.204094918933257
Antisense_14 0.129981235506596 0.157228409445858 1.68101057249603 0.705493609370818 4.38200051883571 -0.278726373582335 -0.687433982671267 -0.551198112974956 -0.623857243479655 0.193557974698208 0.157228409445858 -0.614774852166568 -0.832752243680665 -0.442209417217908 -0.106160938633675 0.202640366011295 -0.133408112572937 0.629512757726401 0.629512757726401 1.61949341085292 0.547771235908615 0.466029714090829 0.502359279343178 0.992808410249896 1.11996188863312 1.80114123711467 1.95554188943716 1.38335123671265 2.39149667246535 0.56593601853479 -0.324138330147772 -0.651104417418917 -0.968988113376975 -0.64202202610583 -0.60569246085348 -0.29689115620851 -0.678351591358179 -0.578445286914218 -0.723763547923616
Antisense_15 0.219801565136139 -0.0560278499366628 0.00548876400921057 0.432719126265267 2.95614168556795 -0.555968664756116 -0.0991261960417881 -0.124985203704863 0.00430983461051253 0.245660572799214 -0.305998257346389 -0.797319402944817 -1.15072584100684 -0.857657087491992 -0.168083549809988 -0.245660572799214 0.142224542146913 0.581827672419191 0.926614441260193 1.40069624841657 0.849037418270967 0.202562226694089 0.219801565136139 0.935234110481218 1.08176848723864 2.2023254859719 1.93511574012012 1.9609747477832 1.83167970946782 0.849037418270967 -0.823178410607892 -1.08176848723864 -0.909375102818143 -0.46115230332484 -0.805939072165842 -0.599067010861241 -0.35771627267254 -0.650785026187391 -0.228421234357164
Antisense_19 -0.0339350845100679 -0.276328545296267 1.01195058049463 0.335539973893152 4.18312692614635 0.208458376276131 -0.218154114707579 -0.179371160981787 -0.0727180382358597 0.208458376276131 -0.392677406473642 -0.586592175102602 -0.790202682163009 -0.509026267651018 -0.0242393460786199 -0.0436308229415158 0.305415760590611 0.470243313925226 1.06168335824355 1.78886374060215 0.87746432804604 0.247241330001923 0.412068883336538 0.935638758634728 1.11016205040079 2.19608475472296 1.99247424766256 2.17669327786007 2.23486770844875 0.945334497066176 -0.460547575493778 -0.964725973929072 -0.945334497066176 -0.509026267651018 -0.693245297848529 -0.441156098630882 -0.392677406473642 -0.528417744513914 -0.382981668042194
Antisense_20 -0.0535208516733374 -0.235381539785689 1.1836628072115 0.0534898069841079 3.40536490911867 0.427875087447592 -0.25677691485773 -0.171195414569565 -0.181893102105585 0.427875087447592 -0.513521415722226 -1.0163127299152 -0.727475166442639 -0.588405228474371 -0.0963116018174201 0.213921336727179 0.2246190242632 0.652526525704026 0.834387213816378 2.06462128045875 0.620433463095964 0.160432899047076 0.246014399335241 0.919968714104543 0.86648027642444 2.27857503117917 2.24648196857111 1.78648140452222 2.10741203060284 0.845084901352398 -0.620498291082433 -1.0163127299152 -1.15538266788347 -0.449335290506102 -0.759568229050701 -0.363753790217937 -0.385149165289978 -0.631195978618453 -0.545614478330288
Antisense_21 -0.126924646538433 -0.341720202218857 1.02604790757022 0.309645543436979 3.08032248190283 0.117161212189322 -0.234322424378645 -0.0683440404437714 -0.0976343434911021 0.497935151804621 0.92752626316547 -0.839655354023478 -1.13255838449678 -0.93728969751458 -0.419827677011739 -0.146451515236653 0.214795555680425 0.663913535739494 0.673676970088604 1.68907414239607 0.781074747928817 0.234322424378645 0.351483636567967 0.92752626316547 1.02516060665657 2.58731010251421 1.92339656677471 2.09913838505869 2.56778323381598 0.732257576183265 -0.517462020502841 -0.888472525769029 -0.986106869260131 -0.683440404437715 -0.790838182277927 -0.4784082831064 -0.156214949585763 -0.214795555680425 -0.390537373964408
Antisense_25 0.212998913884707 -0.0155852863818078 0.752405509316021 1.09677178387428 3.32874069856393 0.0571460500666287 -0.441583114151221 -0.0883166228302442 0.0987068137514495 0.576655596126889 -0.742898650866173 -0.763679032708583 -1.24162781508402 -0.961092660211482 -1.40787086982331 -0.0987068137514495 0.0987068137514495 0.846800560078225 0.909141705605456 2.20791557075611 0.815629987314609 0.0779264319090392 0.0987068137514495 0.929922087447867 0.888361323763046 2.23908614351972 2.35337824365298 2.25986652536213 2.02089213417441 0.950702469290277 -1.0026534238963 -1.12733571495077 -0.753288841787378 -0.316900823096759 -0.61821635981171 -0.35846158678158 -0.337681204939169 -0.742898650866173 -0.244169486648322
Antisense_26 0.205367038918651 0.105187995543699 -0.19150570547465 0.449177565338545 3.38857031749238 -0.525939977718497 -0.155277517231175 -0.0550984738562235 0.255456560606127 0.185331230243661 -0.235420751931137 -1.06690681194324 -1.51771250713052 -1.07692471628073 -0.485868360368516 -0.025044760843738 0.0250447608437379 0.0751342825312138 0.676208542780925 1.45760508110555 0.716280160130905 0.175313325906166 0.175313325906166 0.876566629530828 0.896602438205819 2.48944922786755 1.99857191533029 2.45939551485507 2.25903742810516 0.786405490493372 -1.17710375965568 -1.30733651604312 -1.02683519459326 -0.566011595068478 -0.966727768568285 -0.68622644711842 -0.475850456031021 -0.816459203505857 -0.375671412656069
Antisense_7 0.0257511718351932 -0.272962421453048 0.993065316821614 0.0321428701964065 3.3186278528842 -0.437769921198284 -0.283262890187125 -0.221460077782661 -0.200859140314507 0.365666640059743 0.53047413980498 -0.64377929587983 -1.34421116979708 -0.777685389422835 -0.396568046261975 0.159657265378198 0.324464765123434 0.75708445195468 0.695281639550216 1.45751632587193 0.942492889168071 0.108154921707811 0.231760546516739 0.87038960802953 0.942492889168071 2.31245523080035 1.7459294504261 2.6523706990249 2.45666179307743 0.695281639550216 -0.612877889677598 -0.890990545497685 -0.911591482965839 -0.53047413980498 -0.715882577018371 -0.334765233857512 -0.272962421453048 -0.468671327400516 -0.468671327400516
MMP0339 0.0653752909366945 -0.278897054077954 0.0197896159460632 0.827768936386325 2.39363670336604 -0.572166088720062 -0.240644571298549 0.0143719805641539 -0.444657812788711 0.435149291137613 -1.40096988227385 -1.49022567542579 -0.661421881872008 -0.406405330009305 -0.125887122960333 -0.100385467774062 0.180132739274911 0.345893497985667 0.664664187814046 1.69748122285799 0.5754083946621 0.651913360220911 0.690165843000316 0.957933222456154 1.20019894672572 2.16926184380399 2.37327508529415 1.9907502575001 1.82498949878934 0.62641170503464 -0.406405330009305 -0.610418571499468 -0.992943399293521 -0.86543512336217 -0.648671054278873 -0.431906985195576 -0.801680985396495 -0.916438433734711 -0.610418571499468
MMP0439 0.0674322793704658 0.160800050806495 1.46597446489353 -0.148275511210523 2.18019185494525 0.606890514334192 -0.0778064761966913 0.0155612952393382 0.202296838111397 0.0674322793704658 -0.648387301639094 -0.98036160007831 -0.440903365114584 -0.285290412721201 -0.0155612952393383 -0.731380876248898 -0.461651758767035 0.212671034937623 0.804000254032476 1.3434584889962 0.575767923855515 0.295664609547427 0.866245434989829 0.969987403252084 0.835122844511153 2.33938138431385 2.25638780970405 2.00740708587463 1.44720045725846 0.762503466727575 -0.306038806373652 -0.88699382864228 -0.804000254032476 -0.181548444458946 -0.710632482596447 -0.523896939724388 -0.482400152419486 -0.648387301639094 -0.26454201906875
MMP0821 0.36388162277943 0.08663848161415 0.0281991160993686 -0.218177333221238 4.02116680673537 0.872160714915776 -0.444744205619303 -0.202156457099683 -0.698883751687476 0.15594926690547 -0.675780156590369 -1.21871464137238 -0.976126892852756 -0.860608917367223 -0.687331954138923 0.236811849745343 0.00577589877427667 0.456296003167856 0.721987346784583 1.99268507712545 0.652676561493263 0.46784780071641 0.594917573750496 1.1378520585325 1.29957722421225 2.14285844525664 2.18906563545085 1.77320092370293 2.07354765996532 0.814401727173009 -0.213708254648236 -0.583365776201943 -0.883712512464329 -0.525606788459176 -0.479399598264963 -0.0866384816141499 -0.386985217876536 -0.490951395813516 -0.548710383556283
MMP0940 -0.369745879418517 -0.335350913891213 0.966332111276536 -0.0123718347052056 3.16886896713208 -0.404140844945821 -0.197771051781997 0.146178603491042 0.266560982836605 0.111783637963738 0.21496853454565 -0.421338327709473 -0.404140844945821 -0.6621030864006 -0.0945861552000856 -0.472930776000429 0.0601911896727819 -0.180573569018345 0.0945861552000859 1.19522505207381 1.16083008654651 0.902867845091728 0.92006532785538 1.29840994865572 1.24681750036477 1.9863092592018 1.59076715563781 2.07229667302006 0.765287982982512 0.300955948363909 -0.541720707055037 -0.696498051927904 -0.696498051927904 -0.799682948509816 -0.74809050021886 -1.02325022443729 -0.369745879418517 -0.249363500072953 -0.300955948363909
MMP1056 0.300047433927544 -0.134063747074009 0.207596767513885 0.240074706144685 2.85752800073541 -0.606478855810993 -0.300047433927544 -0.00638398795590519 -0.0191519638677155 0.466031120781079 -1.05335801272436 -1.16826979593065 -0.759694566752717 -0.606478855810993 -0.542638976251941 -0.440495168957458 -0.070223867514957 0.580942903987372 1.4747012178141 1.8449725192566 1.15550182001884 0.414959217133837 0.874606349959011 0.989518133165304 0.683086711281855 2.828106664466 2.75149880899514 2.41953143528807 1.7172927601385 1.41086133825505 0.00638398795590519 -0.606478855810993 -0.632014807634614 -0.555406952163751 -0.593710879899183 -0.593710879899183 -0.248975530280302 -0.414959217133837 0.17236767480944
MMP1478 0.203354726757081 0.101677363378541 -1.61248019759964 -0.0540771260483496 3.27958625364231 -0.0915096270406866 -0.213522463094936 -0.0101677363378541 0.742244752663347 0.396541717176309 -0.315199826473476 -0.569393234919828 -0.782915698014764 -0.640567389284806 -0.488051344216995 -0.396541717176309 0.305032090135622 0.569393234919828 1.20996062420463 1.77935385912446 1.27096704223176 0.915096270406866 0.82358664336618 0.803251170690472 0.589728707595536 2.37925030305785 2.65377918417991 2.39958577573356 1.89119895884086 1.22012836054249 -0.742244752663347 -1.20996062420463 -0.965934952096137 -0.701573807311931 -0.793083434352618 -0.416877189852017 -0.183019254081373 -0.264361144784206 0.0203354726757082
MMP1528 -0.425658647198638 -0.814832267494536 -0.45426660543978 0.804944375221895 4.0486162121083 0.389173620295898 -0.352688593393158 -0.158101783245209 -0.206748485782196 0.53511372790686 0.0608083781712341 -0.255395188319183 -0.790508916226043 -0.474305349735626 -0.218910161416443 -0.158101783245209 0.0608083781712341 0.425658647198638 0.608083781712341 1.26481426596167 0.790508916226043 0.620245457346588 0.194586810147949 0.401335295930145 0.705377186786315 2.01883815528497 2.03099983091922 1.87289804767401 1.47156275174386 0.547275403541107 -0.559437079175353 -0.717538862420562 -0.912125672568511 -0.863478970031524 -0.741862213689056 -0.510790376638366 -0.449981998467132 -0.291880215221923 -0.170263458879455
MMP1568 -0.325472925201234 0.0843818694966163 -0.0362773870339448 0.362797907117703 3.45442942760973 -0.801627760217854 -0.596700362868929 -0.373691136342157 0.669027679580314 -0.144654633422771 -0.488209387801851 0.235063779312002 -0.0120545527852309 0.0723273167113854 0.0723273167113854 -0.13260008063754 -0.361636583556927 -0.385745689127388 0.192872844563694 1.4043553994794 1.72982832468063 1.28380987162709 1.27175531884186 1.27175531884186 2.47118332097233 2.63391978357295 2.57967429603941 2.59172884882464 1.65750100796925 0.253145608489849 -0.337527477986465 -0.446018453053543 -0.452045729446158 -0.385745689127388 -0.325472925201234 -0.307391096023388 -0.0723273167113852 -0.253145608489849 0.415882071090466
MMP1569 -0.472604696761656 -0.256447804476006 0.0342865540713088 0.225067323708166 2.9074756753474 -0.940944630047233 -0.610704933499711 -0.388543683095014 0.572153615952322 -0.202408581404593 -0.034286554071309 0.109818040785791 -0.274460878833143 -0.208412939523639 0.0737918920715164 -0.316491385666464 -0.526643919833069 -0.442582906166427 0.121826757023883 1.52684655688061 1.4728073338092 0.902393312499844 0.926410744976027 1.15457635349977 2.47553513968986 2.87782713366593 2.60763101830887 2.65566588326123 1.77302523976149 0.235909561285754 -0.562670068547344 -0.904918481332958 -0.826861825785361 -0.718783379642536 -0.724787737761582 -0.598696217261619 -0.412561115571198 -0.592691859142573 0.121826757023883
Unanno_46 -0.0103327932430477 -0.123993518916572 0.0588315872336961 0.110621096886838 3.38191364995017 -0.320316590534478 -0.13432631215962 0.0103327932430477 0.13432631215962 0.53730524863848 -0.0516639662152385 -0.919618598631245 -1.18827122295048 -0.661298767555052 -0.547638041881528 -0.361647763506669 0.196323071617906 0.433977316208003 0.929951391874292 1.49825502024192 0.867954632416006 0.196323071617906 0.40297893647886 1.00228094457563 1.09527608376306 2.56253272427583 1.96323071617906 2.55219993103278 2.54186713778973 0.847289045929911 -0.723295527013338 -1.41559267429753 -1.04361211754782 -0.609634801339814 -0.898953012145149 -0.568303628367623 -0.371980556749717 -0.578636421610671 -0.351314970263622
Unanno_53 -0.340012240832309 -0.60614968419658 0.0172670172857821 0.590492379276678 1.49819933331528 -0.300091624327669 -0.220250391318388 -0.19363664698196 -0.273477879991242 0.604775683110851 0.604775683110851 -0.366625985168736 -1.16503831526155 -0.978742104906558 -0.845673383224423 0.0059664355412423 0.205569518064445 0.33863823974658 0.405172600587648 1.38988114103545 0.272103878905513 0.0725007963823099 0.644696299615491 0.631389427447278 0.897526870811548 1.40318801320366 1.61609796789508 1.56287047922222 1.12374369767118 0.498320705765142 -0.300091624327669 -0.725911533710501 -0.938821488401918 -0.965435232738345 -0.366625985168736 -0.37993285733695 -0.353319113000523 0.0325801798776694 -0.60614968419658
[+] Show/hide bicluster #119 motif PSSM #1. bicluster 119 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0.083333 0 0.916667
2 0.083333 0.75 0.166667 0
3 0 0.75 0.25 0
4 0.666667 0.166667 0 0.166667
5 0.083333 0.083333 0 0.833333
6 0.333333 0.25 0 0.416667
7 0.5 0.5 0 0
8 0.5 0.083333 0 0.416667
9 0 0 0 1
10 0 0 0.083333 0.916667
11 0.166667 0.083333 0.25 0.5
12 0 0.833333 0.083333 0.083333
13 0.583333 0.166667 0.25 0
14 0.25 0.333333 0.416667 0
15 0 0.916667 0 0.083333 [+] Show/hide bicluster #119 motif PSSM #2. bicluster 119 motif PSSM #2 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0.875 0.125 0
2 0.125 0 0.625 0.25
3 0 0 0.625 0.375
4 0 0 0.625 0.375
5 0.375 0 0 0.625
6 0.125 0.125 0.625 0.125
7 0.5 0.125 0.125 0.25
8 0.875 0.125 0 0
9 0.125 0.25 0.375 0.25
10 1 0 0 0
11 0.375 0 0.25 0.375
12 0 0.25 0.25 0.5
13 0 0 0.5 0.5
14 0.375 0 0 0.625
15 0.125 0.625 0.25 0
16 0 0.875 0 0.125
17 0.625 0.125 0.25 0
18 0.875 0.125 0 0
19 0.625 0.125 0 0.25
20 0.875 0 0 0.125
21 0.625 0 0.25 0.125
22 0.75 0.25 0 0
23 0.75 0 0 0.25
24 0 0.75 0 0.25 |