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[+] Show/hide bicluster #113 rows and columns.
bicluster 113
Methanococcus maripaludis S2
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[+] Show/hide bicluster #113 rows (genes).
bicluster 113 genes
Methanococcus maripaludis S2
22
[+] Show/hide bicluster #113 rows (short gene names).
bicluster 113 short names
Methanococcus maripaludis S2
22
short_name
[+] Show/hide bicluster #113 rows (long gene names).
bicluster 113 long names
Methanococcus maripaludis S2
22
long_name
[+] Show/hide bicluster #113 rows (NCBI RefSeq gene IDs).
bicluster 113 NCBI RefSeq IDs
Methanococcus maripaludis S2
40
[+] Show/hide bicluster #113 gene upstream sequences.
bicluster 113 upstream sequences
Methanococcus maripaludis S2
22
upstream
[+] Show/hide bicluster #113 columns (arrays; conditions).
bicluster 113 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #113 ratios.
bicluster 113 ratios
Methanococcus maripaludis S2
22x40
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
Antisense_22 -1.90557369039486 -2.03633833814453 -1.74333730700201 -1.78146815852641 -1.57775015759312 -0.000897320547059584 -1.22773952306093 -1.00230157010534 0.136160092320416 0.169975785263756 -0.00755660268877519 0.0600747831979033 0.0347130134903988 -1.08402282805174 -0.991029672457557 -1.21646762541315 -0.137183425638242 1.17035670150421 1.16190277826837 0.85192559295443 1.04354785296669 0.789930155891641 -1.05302510952035 0.271422864093773 0.358780070864066 0.234789196738489 0.21224540144293 0.0572568087859583 0.0318950390784539 0.251697043210159 0.541948407640487 -0.24426645329215 -0.951578030690328 -1.01639144216506 -1.06429700716813 -1.12629244423091 -1.11220257217119 -1.06429700716813 -0.929034235394769 0.525040561168817
MMP0058 -2.40037572723392 -0.895253123566555 -0.920490527366551 -1.34430987793788 -1.17869306121701 -0.572179387800636 -1.38437275415971 -0.607962300428179 0.255576508460254 0.385300948360534 0.604089929087872 0.642813642490941 0.561493844344496 -0.921624378993036 -1.48118203766738 -1.27013779962065 -0.265257436811021 0.209108052376571 0.230406094748259 0.298172593203629 0.511153016920507 0.509216831250354 -1.62833214859904 0.524706316611581 0.406598990732222 0.489854974548819 0.511153016920507 0.62538797145956 0.396918062381454 0.547940544653422 0.369811462999306 -0.540195801972809 -1.24883975724897 -2.42604064470226 -2.44346631573364 -2.34472084655581 -2.27695434810044 -1.86067442901745 -1.32822336972526 0.408535176402375
MMP0372 -2.4607283890366 -1.89935065611017 -1.8932114690861 -2.08806017405859 -1.92557778751403 -1.01218380686388 -1.95363855895764 -0.405716897341628 0.186644185455562 0.242853631268434 0.355272522894179 0.382656611879937 0.356713790735534 -1.87581009552444 -1.52990581359907 -0.926014588071034 -0.0151333123342348 0.0972855792915094 0.172231507042005 0.18087911409014 0.250059970475213 0.245736166951146 -1.65961991932108 0.355272522894179 0.25438377399928 0.251501238316569 0.159260096469804 0.232764756378945 0.0583713475749056 0.381215344038581 0.215469542282676 -0.715589483233102 -1.43045833254553 -2.11794309287219 -2.05308604001119 -2.02570195102543 -2.0689399862661 -2.09200027172779 -2.11794309287219 0.22411714933081
MMP0817 -2.01016912169878 -1.74112831521861 -1.67888627318456 -1.72800519721343 -1.63094809364244 -1.22949535589975 -1.07248105441526 -0.908863255100081 0.516628804686976 0.570420957886487 0.794554929551119 0.841623063600692 0.689211962868742 -0.998516843765933 -1.57229981122739 -1.79867512260867 -0.736280096918314 0.303701531605576 0.456112632337525 0.572662297603134 0.718349379185144 0.686970623152096 -1.54988641406093 0.3193909096221 0.368700383388319 0.151290430873627 0.406803158571307 0.42921655573777 0.478526029503988 0.310425550755515 0.0257754067414328 -0.675763924568864 -1.34816583956276 -1.9891889985236 -1.9936716779569 -2.03625713257318 -2.04298115172312 -1.9936716779569 -1.74936564884245 -0.00112066985832303
MMP1297 -1.75668883548405 -1.9161746022008 -1.80259974880099 -1.67539737033726 -1.34906551830078 0.739662382752148 -1.49365662107975 -1.20799781834489 0.142829401367432 0.19124614759368 0.0411542342923108 0.0459959089149356 0.06052093278281 -1.42829401367432 -0.835188872402778 -1.27336042575032 -0.11135851632037 1.05790590504352 0.999805809572021 0.873922269383776 0.953809900657086 0.806138824667029 -1.01675167075121 0.297762989291425 0.387333969809984 0.268712941555676 0.193666984904992 0.0750459566506844 -0.0411542342923108 0.321971362404549 0.532584208488728 -0.213033683395491 -0.963493249902335 -1.14263521093945 -1.19831446909964 -1.20557698103358 -1.25157288994851 -1.04338088117564 -0.840030547025403 0.576159280092351
MMP1298 -1.79164796849702 -1.86448055299899 -1.79105553261918 -1.61606478766215 -1.24382992631674 0.0243160789924162 -1.38471637317265 -0.865648629823592 0.280728471601344 0.288108581696354 0.142966416494484 0.165106746779515 0.167566783477852 -1.3748762263793 -0.754946978398437 -1.12395248314895 0.194627187159557 1.1343612059242 1.09008054535414 0.949858453548945 1.05810006827576 0.876057352598842 -0.993570538137104 0.42833067350155 0.411110416613192 0.187247077064546 0.0322647650693296 -0.11287740013254 0.049485021957687 0.457851113881591 0.642353866256849 -0.309680335999482 -1.01571086842214 -1.15347292352899 -1.20513369419407 -1.19775358409906 -1.22235395108242 -0.968970171153737 -0.73772672151008 0.676794380033564
MMP1299 -1.67628858603993 -1.97969007183876 -2.05626493694472 -1.83922326485683 -1.55985796963697 0.0392475316878101 -1.35529892953508 -0.800337496707917 0.257486948721815 0.307320220240988 0.259752097427232 0.243896056489313 0.185002190148471 -1.43684428293009 -0.72332244072374 -0.822988983762087 0.0672144574667881 0.989129980571501 0.980069385749833 1.05028899561776 1.12503890289652 0.844160463424814 -0.84337532211084 0.36621408658183 0.273342989659734 0.0490932678234522 -0.234050320353671 -0.27255784834576 0.191797636264722 0.388865573636 0.59952440323978 -0.641777087328728 -1.08121593617962 -1.14690524863672 -1.25336723779131 -1.20353396627214 -1.23751119685339 -0.995140285373778 -0.779951158359164 0.633501633821034
MMP1300 -2.31255128199229 -2.08022860553006 -2.15085957692124 -2.10927933549397 -1.79130135973939 -0.0168229237769853 -1.19316588476724 -0.570675447494867 0.300442827149604 0.320701391676219 0.248875571990946 0.234142070517043 0.219408569043141 -1.20053263550419 -0.811936534130016 -0.754844215918645 0.175208064621434 0.847424069368224 0.972658831896394 0.9339833905274 0.987392333370296 0.799540189578042 -0.937171296658185 0.346485019255548 0.223091944411617 0.0407648636720764 -0.202337910647311 -0.288897231806487 0.213883505990428 0.366743583782164 0.58590441820646 -0.603825825811147 -1.0937147498184 -1.19500757245147 -1.2207912000308 -1.28525026897913 -1.24473313992589 -1.01268049171193 -0.727218900655078 0.622738171891215
MMP1301 -2.35310855692151 -1.80559249120326 -2.14085652540132 -1.92751589123908 -1.57328993348694 -0.211347836112017 -1.39015641424806 -0.540756548313068 0.343964896205357 0.350692815935535 0.35237479586808 0.387696374451515 0.305279357756833 -1.33296909654154 -0.724092360960422 -0.547484468043246 0.180812842748537 0.85696877563144 0.98311727057228 0.984799250504824 1.06385230733442 0.794735518127292 -0.825011156913094 0.402834193844416 0.328827076812456 0.0395265284147966 -0.253137979847952 -0.342282916272813 0.42301795303495 0.439837752360396 0.629901484737928 -0.412926073439683 -1.09580992605276 -1.34810691593444 -1.50284906972854 -1.50957698945872 -1.41875007310131 -1.13954140429892 -0.747640080016045 0.688770782376987
MMP1302 -2.1570786228367 -1.32159040574902 -1.31972761058075 -1.70938647415548 -1.7589177606429 0.408040237851051 -1.091640212544 -0.55534022440465 -0.22213608976186 0.022213608976186 0.253869816870697 0.241176326027162 0.206269226207442 -0.647368033020278 0.203095853496558 0.203095853496558 0.523606497295813 0.847290513805952 0.844117141095068 1.10116033067665 1.228095239112 1.05990648543516 -0.0793343177720929 0.0476005906632558 0.55534022440465 0.336377507353674 -0.152321890122418 -0.368111234462511 0.799689923142696 0.0856810631938604 0.123761535724465 -0.447445552234604 -0.993265658506603 -1.58351298273097 -1.71044789116632 -1.73583487285339 -1.74535499098604 -1.45657807429563 -1.10750707609842 0.168188753676837
MMP1382 -2.65873624290151 -1.83750663768866 -1.66765568630373 -1.74413111533023 -1.57183014851316 -1.04890221668759 -1.14108869804709 -0.488326167723208 0.282365471132468 0.390328739506646 0.591306516018579 0.634491823368251 0.606255276255004 -0.818859866284156 -1.446707796214 -1.32213479424379 -0.287348391211276 0.21758751010796 0.249146003940413 0.280704497772865 0.413582366541085 0.435175020215921 -1.53806133099215 0.250806977300015 0.182707069556303 0.191011936354316 0.186029016275508 0.230875296984782 0.378701925989427 0.274060604334454 0.0116268135172193 -0.739133145023224 -1.3271177143226 -2.36688703743392 -2.4133942915028 -2.44661375869485 -2.43830889189684 -2.21739943506967 -1.70249769359282 0.0282365471132468
MMP1383 -2.54525504999275 -1.78611085350728 -1.63980614121725 -1.70785238435122 -1.54043534623659 -0.900424987453986 -1.13637569038135 -0.616086124483622 0.28914741077762 0.415704332212202 0.623117064563322 0.668818175081365 0.647725354842268 -0.827014326874592 -1.47913401926667 -1.69885089675726 -0.370003221694158 0.231142155120104 0.229384420100179 0.306724760976868 0.428008477351675 0.447343562570847 -1.59690226560163 0.273327795598298 0.192471984681759 0.201260659781383 0.234657625159953 0.245204035279502 0.394611511973105 0.29266288081747 0.0149407476693604 -0.716277020619333 -1.29105637213472 -2.30351174361138 -2.40370263974709 -2.43358413508581 -2.42127998994633 -2.18925896731627 -1.69709316173734 0.0377913029283821
MMP1384 -2.48773171464018 -1.76723698098852 -1.6060561711691 -1.68547512737822 -1.51332528785749 -0.823075254351559 -1.0807676922074 -0.681007465629869 0.318393100813965 0.459901145620171 0.652705856668628 0.691620568990335 0.675700913949636 -0.824284360996153 -1.46991481542447 -1.7830013645582 -0.447519191699628 0.205186664969 0.245870227850784 0.295398043532956 0.426292984978697 0.459901145620171 -1.57250814790897 0.300704595213189 0.229950572810086 0.189267009928301 0.237025975050396 0.244101377290706 0.399760226577534 0.323699652494197 0.0566032179224825 -0.640323902748085 -1.23465769093415 -2.27651067081985 -2.41624986506598 -2.45162687626753 -2.44808917514737 -2.20045009673651 -1.68571458375394 0.0919802291240342
MMP1385 -2.47535691278894 -1.7697466468197 -1.60343657620146 -1.68126749459161 -1.51781159023309 -0.672374624178752 -1.05297517944177 -0.808648471138397 0.294468383514884 0.445805075971451 0.682838449698602 0.730245124444032 0.660958445969942 -0.812295138426507 -1.47963525215064 -1.79142530528405 -0.595318434783961 0.232475039617014 0.237945040549179 0.312701719955434 0.422101738598735 0.447628409615505 -1.61638527545477 0.30358505173516 0.237945040549179 0.181421697583474 0.281705048006499 0.305408385379214 0.341875058260315 0.32181838817571 0.0483183415674579 -0.600788435716126 -1.18790186910184 -2.25455205087402 -2.41865207883897 -2.46970542087251 -2.46241208629629 -2.2107920434167 -1.70208195672535 0.0811383471604482
MMP1691 -2.14271905186694 -1.05582210545701 -1.10614859050782 -1.05255199036112 -0.898468691534341 -0.450962013841911 -0.45661763941733 -0.401381634649105 0.0257768022251719 0.2614504225696 0.788033668026683 0.883776076291607 0.880093675973725 -0.139931212079504 -0.500806443231911 -1.1673209007685 -0.872728875337962 0.279862424159009 0.272497623523246 0.452935239099449 0.817492870569737 0.924282479788306 -0.821175270887618 0.765939266119393 0.567089648953781 0.714385661669049 0.835904872159145 0.990565685510176 0.570772049271663 0.769621666437274 0.0846952073112789 -0.471347240688857 -1.09367289441086 -2.43774901043768 -2.63291622728541 -2.4340666101198 -2.41933700884827 -1.67180974431829 -0.950059282013478 0.158343213668913
MMP1692 -2.02417960779254 -1.0366499025583 -1.08851058773781 -0.961226079150388 -0.924276020669578 -0.412144979118758 -0.397702422863426 -0.354316704005598 0.112079773716056 0.300084555433312 0.83879056458468 0.954485814872222 0.882176283442508 -0.0686940548582281 -0.44470361829274 -1.13164416687502 -0.715864361154167 0.256698836575484 0.245852406861027 0.466396477721654 0.824328658298737 0.932792955443308 -0.762865556583481 0.762865556583481 0.611015540581082 0.744788173726052 0.842406041156166 0.925562002300337 0.571245298294739 0.777327462869423 0.0867714377156566 -0.527859579436911 -1.17502988573285 -2.46937049832473 -2.61760503775564 -2.42960025603838 -2.41513834975244 -1.6414263634545 -0.940023908586279 0.180773828574284
MMP1693 -1.92666374361509 -1.01006351245186 -0.961519652001635 -0.985309358447442 -0.839302715937203 -0.171851433856061 -0.334053759038483 -0.27353705713563 0.192797528115766 0.292472095955759 0.837122413081435 0.922557756944286 0.922557756944286 0.0326062583729204 -0.383891042958479 -1.16704836170128 -0.611718626592749 0.263993648001476 0.352988797858612 0.48826142564146 0.801524353138581 1.02579213077856 -0.693594164461314 0.701849785298588 0.587935993481453 0.708969397287159 0.751687069218584 0.765926293195726 0.570136963510025 0.762366487201441 0.0290464523786349 -0.615278432587034 -1.31656021346127 -2.52689425151833 -2.7048845512326 -2.40942065370691 -2.42365987768405 -1.65830158891268 -0.957019808038439 0.167878886155768
MMP1694 -2.07767747176483 -1.01985114615033 -1.13033998072071 -0.972949545296542 -0.924176156928384 -0.456550607136385 -0.342874841518332 -0.339321734352339 0.14390084022272 0.335768627186346 0.822544308927397 0.914925095243218 0.911371988077224 0.0088827679149827 -0.371299698846277 -1.08547423921089 -0.484999128158055 0.264706483866484 0.28247201969645 0.477892913826069 0.818991201761404 0.971774809899107 -0.59514545030384 0.776353915769488 0.598698557469834 0.762141487105515 0.719504201113598 0.779907022935481 0.627123414797778 0.79056634443346 0.126135304392754 -0.676866915121681 -1.2844482405065 -2.49605778411014 -2.63107585641787 -2.40367699779432 -2.34327417597243 -1.61133409977786 -0.939796845405169 0.154560161720699
MMP1695 -1.94332902321112 -1.04739152402066 -1.10185108107883 -0.985152030239892 -0.896357022558583 -0.50253663082966 -0.360098500708131 -0.34976074470694 0.118884194013689 0.349760744706941 0.852864870098205 0.952796511443045 0.873540382100585 0.0155066340017856 -0.325639314037496 -0.959688348777172 -0.33942298870575 0.284288290032735 0.256720940696227 0.522056678060113 0.821851602094634 0.925229162106537 -0.62888015673908 0.79773017142519 0.653001587408524 0.81840568342757 0.777054659422809 0.814959764760507 0.659893424742651 0.825297520761697 0.0740872513418643 -0.790838334091063 -1.31461797148471 -2.52413542362398 -2.61372930896763 -2.35183949027081 -2.31048846626605 -1.5420486035109 -0.876986300767649 0.143005624683133
MMP1696 -2.10248674781855 -1.11302625782267 -1.21602121159355 -1.02231281594496 -1.03149898412536 -0.535795205477313 -0.403007585884873 -0.363204367525873 0.124385057371875 0.286914865671124 0.761236551115872 0.787772030021872 0.771187355705622 0.0215600766111249 -0.346619693209623 -0.940351033731371 -0.339985823483123 0.220576168406124 0.286914865671124 0.499198696919123 0.771187355705622 0.907181685098871 -0.645143830902122 0.738018007073122 0.598706742816622 0.747968811662872 0.711482528167122 0.757919616252622 0.658411570355122 0.747968811662872 0.0414616857906249 -0.820941378654371 -1.41467271917612 -2.58555072590336 -2.63198781398886 -2.32682980656987 -2.29034352307412 -1.55066704856937 -0.883963141056121 0.0580463601068748
MMP1697 -1.9440803252477 -1.10502770449025 -1.25149524028934 -1.05905429800689 -0.904949817097263 -0.59800525212212 -0.383060953917696 -0.329298013016966 0.154568455089597 0.312497093985489 0.793003378285756 0.84340613538019 0.829965400155008 0.0873647789636851 -0.309136910179193 -0.745960804997618 -0.34945911585474 0.248653601665873 0.211691579796621 0.473785916687676 0.749320988803914 0.947571833375353 -0.608193268939499 0.776202459254278 0.594752533714317 0.725799702159845 0.692197864096889 0.766121907835392 0.702278415515776 0.799723745898347 0.0537629409007293 -0.93413109815017 -1.47176050715746 -2.55709987659093 -2.54701932517205 -2.30172590731247 -2.23452223118656 -1.48520124238265 -0.863567238217963 0.127686984639232
Unanno_63 -0.910822796248381 -0.879100233567332 -1.29738695304427 -1.57255835201703 -1.43002509688315 -1.8524590345404 -1.6604612056618 -0.887029494145384 0.00241697409848879 0.132933575416883 0.505147586584156 0.41813651903856 0.485811793796246 -1.13839480038822 -0.79518447840281 -1.29791509088848 -0.959538717100048 0.466476001008336 0.413302570841582 0.485811793796246 0.785516582008855 0.969206613494003 -1.25440955711568 1.04654978464564 0.461642052811358 0.843523960372586 0.326291503295986 0.287619917720166 0.751678944630012 1.11905900760031 0.39880072625065 -0.703339462660237 -1.15773059317613 -2.26470473028399 -2.44839476176914 -1.9601659938744 -2.08101469879884 -1.31241693547941 -0.920867131524227 0.432638363629493
[+] Show/hide bicluster #113 motif PSSM #1. bicluster 113 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.363636 0.272727 0.363636 0
2 0.181818 0.727273 0 0.090909
3 0 1 0 0
4 0.636364 0 0 0.363636
5 0 1 0 0
6 0 1 0 0 [+] Show/hide bicluster #113 motif PSSM #2. bicluster 113 motif PSSM #2 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.125 0 0 0.875
2 0 0 0.875 0.125
3 0 0.125 0.875 0
4 0 0 1 0
5 0 0 1 0
6 0 0.5 0 0.5 |