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[+] Show/hide bicluster #112 rows and columns.
bicluster 112
Methanococcus maripaludis S2
19x38
[+] Show/hide bicluster #112 rows (genes).
bicluster 112 genes
Methanococcus maripaludis S2
19
[+] Show/hide bicluster #112 rows (short gene names).
bicluster 112 short names
Methanococcus maripaludis S2
19
short_name
[+] Show/hide bicluster #112 rows (long gene names).
bicluster 112 long names
Methanococcus maripaludis S2
19
long_name
[+] Show/hide bicluster #112 rows (NCBI RefSeq gene IDs).
bicluster 112 NCBI RefSeq IDs
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #112 gene upstream sequences.
bicluster 112 upstream sequences
Methanococcus maripaludis S2
19
upstream
[+] Show/hide bicluster #112 columns (arrays; conditions).
bicluster 112 arrays
Methanococcus maripaludis S2
38
[+] Show/hide bicluster #112 ratios.
bicluster 112 ratios
Methanococcus maripaludis S2
19x38
GENES ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0081 1.1850186257392 0.829704431367558 0.904183597759915 1.03889374219131 -2.6299337520766 -1.09453993180259 -0.0242035857155365 -0.190939398422565 -0.422218106371025 -0.147910801594945 -0.0995036301638722 -0.0941250555604196 0.00268928730172627 -0.196317973026018 -0.927804119095564 0.379189509543404 0.416839531767572 0.0672321825431567 0.029582160318989 -0.38994665875031 -0.142532226991492 -0.131775077784587 -0.0457178841293467 -0.997725588940447 -1.27203289371653 -1.64315454135475 -0.0833679063535145 0.0941250555604195 1.29892576673379 1.14832567783712 1.37422581118213 1.58936879532023 1.4333901318201 1.36884723657867 1.06764705878533 1.12681137942331 1.12143280481986 0.164046525405303
MMP0082 1.18031831189592 0.722103262645354 0.80893819190389 0.934607628521017 -1.83920550223946 -1.33546012484507 0.00534184049938027 -0.160255214981408 -0.379270675455999 -0.181622576978929 -0.138887852983887 -0.138887852983887 -0.0694439264919433 -0.20298993897645 -1.52776638282275 0.293801227465914 0.448714601947942 0 0.0213673619975211 -0.454056442447322 -0.224357300973971 -0.0961531289888446 -0.0694439264919433 -1.00960785438287 -1.23396515535684 -1.59186846881532 -0.0961531289888446 0 1.08439362137419 1.137812026368 1.44763877533205 1.67199607630602 1.51708270182399 1.42092957283515 1.10576098337171 1.14315386686738 1.137812026368 0.117520490986366
MMP0083 1.16143680953791 0.696669858639671 0.781061954535875 1.01615421914054 -0.762336687834406 -1.19640678105258 -0.0405561620695791 -0.0811123241391582 -0.334588337074027 -0.182502729313106 -0.101390405173948 -0.00506952025869739 -0.00506952025869739 -0.314310256039238 -1.53099511812661 0.238267452158777 0.395422580178396 0.0709732836217634 0.00506952025869739 -0.456256823282765 -0.111529445691343 -0.243336972417474 -0.0456256823282765 -0.689454755182844 -1.17612870001779 -1.56648175993749 -0.0709732836217634 0.192641769830501 0.846609883202463 1.18626774053519 1.3586314293309 1.44988279398745 1.46509135476354 1.47523039528094 1.20147630131128 1.20147630131128 1.14571157846561 0.197711290089198
MMP0162 1.35412658681443 0.133501672266625 0.790888987251475 0.953638977555318 -2.58444867281986 -0.114579132268686 -0.207939906709838 -0.250376622364907 -0.335250053675045 -0.131553818530714 -0.0212183578275345 0.0976044460066588 0.216427249840852 -0.352224739937073 0.488022230033294 0.666256435784584 0.768104553356749 -0.0466803872205759 -0.649281749522556 -0.742642523963708 -0.810541269011818 -0.598357690736473 0.224914592971866 -1.63381355272016 -1.74414901342334 -1.5998641801961 0.309788024282004 0.224914592971866 0.708693151439653 1.1075982785973 1.4131426313138 1.8459971309955 1.57440215080306 1.27734514121758 0.683231122046611 0.530458945688363 0.980288131632094 0.114579132268686
MMP0414 2.14102869536193 0.773191859278412 1.35632229819127 1.71226673033736 -0.113364689339954 -0.650802445382381 -0.0392049665893 -0.2352297995358 -0.44693661911802 -0.12545589308576 0.0392049665893001 0.0940919198143202 0.37636767925728 0.10193291313218 0 0.3136397327144 0.588074498839501 -0.25875277948938 -0.14897887303934 -0.776258338468141 -0.501823572343041 -0.509664565660901 -0.04704595990716 -1.176148997679 -1.15262601772542 -1.38001482394336 -0.04704595990716 -0.431254632482301 0.697848405289541 0.776258338468141 1.27808191081118 1.73285952324706 1.70149554997562 1.58388065020772 1.26239992417546 1.23887694422188 1.15262601772542 -0.439095625800161
MMP0540 1.57127181442288 0.658520633170115 0.894065934663102 1.01662095918908 -2.39936400397629 -0.398040871340116 0.0279326927256222 0.0349158659070277 -0.167596156353733 -0.00698317318140555 -0.0349158659070278 -0.0279326927256222 0.0488822122698388 -0.00698317318140555 -0.558653854512444 -0.300276446800438 -0.523737988605416 -0.670384625414932 -0.684350971777743 -1.10334136266208 -0.817031262224449 -0.970661072215371 0.111730770902489 -0.195528849079355 -0.418990390884333 -0.726250010866177 0.104747597721083 0.0279326927256222 0.530721161786821 0.677367798596338 0.803064915861638 0.942728379489749 0.991610591759587 1.01954328448521 1.24998799947159 1.31981973128565 1.22205530674597 -0.0279326927256222
MMP0704 1.49552210369434 1.8803669041082 1.40361241616004 0.899968066616449 -1.25217122813795 -0.899006015291139 -0.020105565837182 0.249883461119262 -0.209672329444898 -0.0660611448935981 0.00861667107307802 -0.0488278027474421 -0.146483408242326 0.0718055922756501 -0.387750198288511 -0.037338907983338 -0.330305724467991 -0.27286125064747 -0.24413901373721 -0.617528093570591 -0.21541677682695 -0.307327934939782 0.726672593829579 -1.24941730559631 -0.985172726021919 -0.807094857178307 0.761139278121891 1.14601725271938 1.45047296396813 1.78365091212715 1.60557304328354 1.29537288465273 1.0713394367527 1.07708388413475 1.6342952801938 2.05363993908359 1.99619546526307 1.14027280533732
MMP0894 2.22123084854259 0.920711595359929 1.10930725867019 1.20995551609117 -3.0661575283665 -0.553263469291775 -0.314444705568707 -0.179114072792301 -0.234838450994351 -0.0199015636435891 0.0597046909307672 -0.123389694590252 0.553263469291775 -0.513460342004597 -0.258720327366658 0.67267285115331 0.346287207398449 -0.402011585600499 -0.378129709228192 -0.895570363961507 -0.601027222036389 -0.593066596578953 -0.139310945505123 -0.768200356642537 -0.983137243993298 -1.38116851686508 -0.171153447334866 0.473657214717419 0.74431848027023 0.784121607557408 1.10254662585483 1.52445977509892 1.47669602235431 1.50057789872661 1.39708976777995 1.37320789140764 0.99905849490817 0.425893461972805
MMP1017 1.12683845281641 0.110089113169978 0.32804725795385 0.470548741797408 -2.95265173596169 -0.879805609974561 -0.116200740940036 -0.138334215404805 -0.171534427101959 0.0166001058485766 0.166001058485766 0.354135591436301 0.724871288721179 -0.409469277598224 -0.348602222820109 -0.0387335803133455 0.22686811326388 -0.193667901566727 -0.354135591436301 -0.536736755770644 -0.409469277598224 -0.536736755770644 0.0110667372323844 -1.44974257744236 -1.30034162480517 -1.2782081503404 0.0442669489295376 0.293268536658187 0.514603281305876 0.630804022245912 0.835538661045024 1.30034162480517 1.26160804449182 1.03473993122794 0.957272770601252 0.996006350914598 0.846605398277408 0.359668960052494
MMP1188 1.52117419548348 0.608602265024687 0.856403935378152 0.998058003502188 -3.18138758953587 -0.632977345702489 0.367435629944372 0.101893914186254 -0.237752466434593 -0.0524908042777674 0.0524908042777674 0.163647801571863 -0.0524908042777674 -0.657678900656733 0.182173967787546 0.534171125885515 0.515644959669832 -0.126595469140498 -0.219226300218911 -0.861466729029241 -0.645328123179611 -1.02202683623182 -0.231577077696033 -1.31844549568275 -1.46665482540821 -1.42960249297684 -0.28715557634308 -0.262454021388837 0.330383297513006 0.787362064166511 1.18258694343441 1.1517099997416 1.12700844478736 0.805888230382193 0.744134342996585 0.92322061641485 0.978799115061898 -0.330383297513006
MMP1306 1.55917804618753 0.0524631714520088 0.33173723817984 0.10900053288547 -1.02857204062106 -0.759565791824984 0.0188946714384325 -0.283420071576487 -0.631082026043643 -0.374114494480962 -0.306093677302606 -0.313651545877978 -0.0340104085891784 0.668871368920508 0.154936305795146 0.865375951880206 1.03920692911378 0.381672363056335 0.21539925439813 -0.192725648672011 -0.1398205686444 -0.177609911521265 -0.200283517247384 -1.53046838651303 -1.68918362659586 -1.87813034098018 -0.1398205686444 0.109589094342908 1.12234348344289 1.50023691221154 1.84034099810332 2.11242426681675 1.7345308380481 1.32640593497796 1.00897545481229 1.1752485634705 1.07699627199065 0.117146962918281
MMP1308 1.24154022020762 0.257490222827139 0.592699690664762 0.676409048771142 -1.32666284941923 -0.963998410242992 0.549973451997604 0.0247179079549485 -0.228640648583274 -0.111230585797268 0.0617947698873713 -0.00617947698873711 0.17302535568464 -0.815690962513301 -1.09376742700647 0.191563786650851 0.772434623592141 0.148307447729691 -0.166845878695902 -0.642665606828661 -0.444922343189073 -0.339871234380542 -0.179204832673377 -1.45835656934196 -1.35948493752217 -1.42745918439828 -0.142127970740954 0.321332803414331 0.939280502288043 1.65609983298155 2.14427851509178 2.31112439378769 2.2307911929341 1.80440728071124 0.908383117344358 0.821870439502038 1.09994690399521 0.444922343189073
MMP1426 1.29306578014996 0.397471927168135 0.696393266599038 0.777772204227041 -1.97560178839239 -0.240297766296586 0.0706758136166429 -0.240297766296586 -0.353379068083215 -0.14841920859495 0 0.0141351627233286 0.183757115403272 -0.14841920859495 0.0565406508933143 0.551271346209815 0.664352647996443 0.0141351627233286 0 -0.530068602124822 -0.353379068083215 -0.416987300338193 -0.431122463061522 -1.20855641284459 -1.53366515548115 -1.52659757411949 -0.332176323998222 -0.162554371318279 0.600744415741465 0.925853158378022 1.27923222646124 1.62554371318279 1.43471901641785 1.00359655335633 0.664352647996443 0.706758136166429 0.530068602124822 -0.120148883148293
MMP1427 1.62770413686611 0.614708122031845 0.824719485956289 0.992394011268809 -0.260210567013105 -0.602742746611474 0.1410674513346 -0.1410674513346 -0.303508758932019 -0.0812206537987093 -0.0384729412730728 0.1410674513346 0.611292289116601 0.406103268993546 -0.1410674513346 0.662589544147365 0.833580394249911 -0.252211503901255 -0.329157386447401 -0.936174904311438 -0.568544576590965 -0.45740052402431 -0.192364706365364 -1.16701255194988 -1.49189516714471 -1.62013830472162 -0.200914248870491 -0.106869281314091 0.765184054208892 1.15846300944475 1.51754379466009 2.00486771745235 1.85097595236006 1.63723738973188 1.09006666940373 0.987472159342202 0.782283139219147 -0.123968366324346
MMP1437 1.93966859973665 1.45048797904516 1.46826289985036 1.37142660639633 -1.97618342937603 -0.898006579340901 -0.774991979431189 -0.811896359404103 -1.03332263924159 -0.676580299503419 -0.59047007956662 -0.516661319620793 -0.172220439873598 -0.332139419756224 -0.147617519891655 0.78729343942216 0.369043799729138 -0.39364671971108 -0.0123014599909712 -0.799594899413132 -0.455154019665936 -0.246029199819425 0.19682335985554 -1.74680731871792 -1.75910877870889 -1.75910877870889 0.258330659810396 0.0615072999548563 0.221426279837483 0.282933579792339 0.615072999548563 1.02102117925061 0.750389059449246 0.455154019665936 0.332139419756224 0.9841167992777 1.52538103888044 0.19682335985554
MMP1583 0.368936478943021 0.205363387204567 0.0206840821644888 0.0366192714193263 -1.02555054962276 -1.38492419162799 0.283772316058989 -0.361270031450265 -0.746893173982971 -0.550575937784503 -0.382304021042958 -0.178975454980259 0.15756837850283 -0.641723226019506 -0.382304021042958 0.543191521035536 1.20225652827325 -0.536553278056041 -0.957233069909902 -1.38492419162799 -1.2727429138003 -1.11849365678722 0.0664210902678271 -1.30779956312145 -1.14653897624414 -1.12550498665145 0.08745507986052 0.311817635515913 1.13915455949517 1.53880036175634 2.06465010157367 2.28901265722906 1.89637818483212 1.4616757332498 0.823644715604777 0.830656045469008 0.816633385740546 0.36089694456553
MMP1585 1.00048431457096 0.232081479482491 -0.00524974885010447 -0.276976795949782 -2.99820286168807 0.0966581272658894 0.0395278907560237 -0.48607028513474 -0.543200521644606 -0.874555893401827 -0.931686129911693 -0.977390319119585 -0.66888704196631 -0.588904710852499 0.0966581272658894 0.0966581272658894 0.930759580309928 -0.314679575605143 -0.394661906718955 -0.154714913377519 -0.840277751495907 -0.646034947362364 0.00524974885010439 -0.714591231174203 -0.280401433699224 -0.0747325822637075 -0.0975846768676538 0.06237998535997 0.987889816819794 1.67345265493818 2.22190292543289 2.0048080266954 1.5820442765224 1.13642843174544 1.09072424253755 0.667960492364546 0.61083025585468 0.0166757961520775
MMP1615 1.72707771580388 1.1377253272938 1.18787701735432 1.03335938475445 -1.55309492229977 -0.679431414790256 -0.577051338588984 -0.325754787913136 -0.614280457207628 -0.36298390653178 -0.0651509575826272 0.232681991366526 0.130301915165254 0.223374711711865 -0.753889652027544 -0.0186145593093221 -0.0930727965466104 -0.381598465841102 -0.381598465841102 -1.33094099061653 -0.921420685811442 -0.846962448574154 1.18202451614195 -0.707353253754239 -0.846962448574154 -1.10756627890466 1.29371187199788 0.00930727965466104 0.7166605334089 1.36817010923517 1.40539922785382 1.39609194819916 1.07964443994068 0.763196931682205 0.893498846847459 1.61015938025636 2.05690880368009 -0.00930727965466104
MMP1616 1.73111810361791 0.71236520380572 0.890953543591155 0.969074581409223 -1.3732849600538 -0.347022511204664 -0.18407281029117 -0.328916988880943 -0.558253604981416 -0.310811466557221 -0.244424551370242 -0.196143158506984 0.0331934575934896 0.419444600499551 -0.129756243320005 0.0211231093776752 0.0814748504567472 -0.509972212118159 -0.666886738923746 -1.04106753361399 -1.02296201129027 -0.860012310376777 0.576359127305138 -1.31868554257772 -1.32472071668563 -1.48163524349122 0.624640520168396 0.347022511204664 1.33075589079354 1.68079598905216 1.72907738191541 1.78942912299449 1.56612768100192 1.23419310506702 1.07124340415353 1.4635297211675 1.76528842656286 0.389268729960015
[+] Show/hide bicluster #112 motif PSSM #1. bicluster 112 motif PSSM #1 Methanococcus maripaludis S2 15x4
POSITION A C G T
1 0 0 0 1
2 0 0 1 0
3 0 0 1 0
4 0 0 0 1
5 0 0 0 1
6 0 0.333333 0.333333 0.333333
7 0 1 0 0
8 1 0 0 0
9 0.333333 0 0.666667 0
10 0.666667 0 0 0.333333
11 1 0 0 0
12 0 0 0.333333 0.666667
13 0 1 0 0
14 0 1 0 0
15 0 1 0 0 [+] Show/hide bicluster #112 motif PSSM #2. bicluster 112 motif PSSM #2 Methanococcus maripaludis S2 14x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 0.285714 0 0 0.714286
4 0.285714 0 0.714286 0
5 0.285714 0.285714 0.428571 0
6 0 0 0.571429 0.428571
7 0 0 0.857143 0.142857
8 0 0.714286 0 0.285714
9 0.285714 0 0.714286 0
10 0.714286 0 0.142857 0.142857
11 0.285714 0 0.714286 0
12 0.714286 0.285714 0 0
13 0.428571 0.428571 0.142857 0
14 0 0.714286 0.285714 0 |