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[+] Show/hide bicluster #111 rows and columns.
bicluster 111
Methanococcus maripaludis S2
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[+] Show/hide bicluster #111 rows (genes).
bicluster 111 genes
Methanococcus maripaludis S2
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[+] Show/hide bicluster #111 rows (short gene names).
bicluster 111 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #111 rows (long gene names).
bicluster 111 long names
Methanococcus maripaludis S2
22
long_name
[+] Show/hide bicluster #111 rows (NCBI RefSeq gene IDs).
bicluster 111 NCBI RefSeq IDs
Methanococcus maripaludis S2
42
[+] Show/hide bicluster #111 gene upstream sequences.
bicluster 111 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #111 columns (arrays; conditions).
bicluster 111 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #111 ratios.
bicluster 111 ratios
Methanococcus maripaludis S2
22x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0010m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_minus30m
MMP0078 -1.05862926234252 -1.19707103839698 0.966716755530063 -0.404074351387358 0.0532300269175992 -0.0631397531437817 -0.0605751298917402 0.251242926480432 -0.174731769071747 -0.249277340793379 0.176697354758801 0.272541661258041 0.325788498202064 0.112801150425974 0.0808530482595606 -0.579407729846318 -0.430316586403055 -0.32382291251501 -0.515511525513491 -0.196030503849356 -0.355771014681423 -0.164082401682943 -0.281225442959792 -0.377069749459032 0.155398619981192 0.134099885203583 -0.11083556473892 -0.00434189085087534 0.0382555787043426 -0.153433034294138 -0.32382291251501 -0.142783666905334 -0.281225442959792 -0.164082401682943 0.155398619981192 0.379035335146086 0.4109834373125 0.50682774381174 -0.387719116847837
MMP0079 -0.762747415319885 -0.584587435099182 1.77820637792877 0.267306524218666 0.504625895476501 0.87853799592483 1.20585773175084 0.785017412847473 0.12805248578363 0.0835124907284546 -0.272807469712952 -0.918637398013 -0.0835124907284546 0.150322483311218 0.584587435099182 0.528912441280212 0.462102448697449 -0.384157457350891 -0.116917487019836 -0.807287410375061 -0.417562453642273 -0.428697452406067 0.23940247342157 -0.339617462295715 0.450967449933655 0.0946474894922485 -0.5511824388078 -0.0723774919646606 -0.23940247342157 -0.829557407902649 -1.0967973782337 0.172592480838806 0.306212466004333 0.517777442516418 0.406427454878479 0.150322483311218 0.283942468476746 0.0501074944370728 -0.896367400485412
MMP0131 0.154164612676692 -0.395465745561949 1.11646728360488 -0.205560306174454 0.586001691404054 0.806944958205561 0.70040793415797 0.422276982549199 0.0335140462340634 -0.180975849663943 -0.0335140462340635 0.382060127068323 -0.00670280924681269 0.341843271587447 0.154164612676692 -0.154164612676692 -0.27481517911932 0.0469196647276888 -0.422276982549199 -0.690389352421707 -0.542927548991828 -0.167570231170317 -0.154164612676692 -0.207787086651193 -0.140758994183066 -0.288220797612946 -0.489305075017326 -0.315032034600196 -0.0335140462340635 -0.00670280924681269 -0.154164612676692 0.435682601042825 0.422276982549199 0.636766878447205 0.690389352421707 0.663578115434456 0.784228681877084 0.770823063383459 -0.0603252832213142
MMP0325 -0.143339135669073 0.346788231457435 0.123317109052939 0.589747983187339 0.764850951100759 0.848783450174683 0.888174663001625 -0.263559055907651 -0.0138715292582974 0.272806742079849 0.439265093179418 -0.319045172940841 0.624218816623383 0.00462384308609914 0.402274348490625 0.00462384308609914 0.16183450801347 -0.282054428252047 -0.143339135669073 -0.707447992173168 0.0601099601192887 0.180329880357866 -1.29929990719386 -0.64271418896778 -0.254311369735453 -0.540989641073599 -0.208072938874461 -0.282054428252047 -0.309797486768642 -0.559485013417996 -0.568732699590194 0.134091449496875 0.208072938874461 0.254311369735452 -0.0693576462914871 -0.346788231457435 -0.152586821841272 -0.300549800596444 -0.614971130451185
MMP0561 -0.213441221991886 -0.213441221991886 0.968699948577401 -0.605232073783417 0.508802399957368 0.827839332031078 1.05049796393902 0.689579332589171 0.131348444302699 -0.114929888764862 -0.229859777529724 0.870183443505382 0.705997888127008 -0.361208221832423 0.0328371110756748 -0.0656742221513495 1.24781022087564 0.673160777051333 0.44330099952161 -0.229859777529724 0.344789666294585 -0.295533999681073 0.558230888286471 -0.886601999043219 -0.476138110597285 -0.673160777051333 -0.75525355474052 -0.459719555059447 0.0656742221513495 -0.591067999362146 -0.262696888605398 -0.246278333067561 -0.180604110916211 -0.229859777529724 0.640323665975658 0.919439110118894 0.935857665656732 1.19855455426213 -0.656742221513496
MMP0564 0.218832475307854 -0.370331881290214 0.195127699919141 0.249348007492108 -0.237114565125171 0.489538885888623 -0.0131390889826321 -0.235665742639227 0.0673330693254936 0.454498217947081 -0.908996435894162 0.252499009970601 0.084166336656867 -0.791163564574549 -0.706997227917682 0.15149940598236 -0.538664554603948 0.370331881290214 -0.235665742639227 0.185165940645107 -0.134666138650987 -0.218832475307854 0.0504998019941202 -1.78432633712558 -1.0773291092079 -0.538664554603948 -0.504998019941201 0.454498217947081 0.454498217947081 1.43082772316674 -0.437664950615708 0.302998811964721 0.370331881290214 0.336665346627468 0.302998811964721 0.488164752609828 0.387165148621588 0.538664554603948 -0.723830495249055
MMP0602 -0.424070200082492 -0.181744371463925 -0.145705085726188 -0.468236540224487 -0.176447180777286 -0.0433182689777815 0.490239431210261 0.45868817559943 0.164435383705456 0.164435383705456 0.649087040942589 0.199053359222394 1.01257578387044 -0.147126395946987 0.354834249048615 0.0778904449131107 0.164435383705456 -0.0086544938792345 -0.510615138874837 -0.770249955251873 -0.216362346980863 -0.250980322497801 -0.0605814571546417 -1.37606452679829 -1.01257578387044 -0.874103881802687 -0.614469065425651 -0.320216273531677 0.337525261290146 0.0432724693961726 -0.372143236807084 -0.112508420430049 -0.181744371463925 0.233671334739332 0.649087040942589 0.752940967493404 0.787558943010342 0.527924126633306 -0.510615138874837
MMP0706 0 -0.0911835781128694 0.636540903886775 0.204468812147869 0.394615469418048 0.382263426929063 0.437286175970804 -0.17407774003366 -0.290129566722766 0.132630659073265 -0.132630659073265 -0.207235404801976 -0.232103653378213 -0.588548549637612 -0.447628474372268 0.455917890564347 0.281840150530687 -0.0331576647683161 -0.182367156225739 -0.455917890564347 -0.207235404801976 -0.215524820994055 0.555390884869295 -0.5139438039089 -0.406181393411873 -0.389602561027715 -0.381313144835636 0.571969717253453 0.804073370631666 0.596837965829691 -0.364734312451478 0.0663153295366323 0.207235404801976 0.331576647683161 0.215524820994055 0.240393069570292 0.34815548006732 0.0828941619207903 -0.34815548006732
MMP0881 -0.134702172274453 -0.296344779003797 0.602776498490631 0.453068137834895 0.156895357340831 0.523137492256272 1.1396504872285 0.167030693620322 -0.0592689558007594 0.123925998492497 0.00538808689097814 -0.0808213033646719 0.0269404344548907 0.382554169259448 -0.113149824710541 0.0269404344548907 -0.123925998492497 -0.134702172274453 -0.00538808689097814 -0.0915974771466282 -0.447211211951185 -0.479539733297054 -0.134702172274453 -0.630406166244442 -1.09378163886856 -0.845929641883567 -0.845929641883567 -1.00757224861291 -0.705839382718136 -0.727391730282048 0.210135388748147 0.457987385733142 0.544196775988791 0.738167904064004 0.942915205921173 0.845929641883567 1.10455781265052 1.00757224861291 0.274792431439885
MMP0942 0.0925782960167938 -0.517349301270318 1.55507191394674 0.526711570081469 0.62064596386988 0.575891883816649 0.75507215474604 0.484674608558508 0.430216787372159 0.637156507880286 0.136144552965873 0.637156507880286 -0.550023993982127 -0.277734888050381 -0.0599036033049841 0.571807122456667 0.125252988728603 -0.0925782960167937 -0.36486740194854 -0.310409580762191 -0.168819245677683 -0.245060195338572 -0.36486740194854 -0.996578127710191 -0.658939636354826 -0.550023993982127 -0.724289021778445 -0.419325223134889 -0.0163373463559046 0.321301144999461 -0.430216787372159 0.103469860254064 0.408433658897619 0.495566172795778 0.451999915846699 0.430216787372159 0.179710809914953 0.0163373463559048 -0.451999915846699
MMP0943 -0.232070937636504 -0.639953191664299 1.20424063865559 -0.835892203320573 0.775975748889136 1.15936067912945 1.33866882634415 0.668083002286905 0.682147907598208 1.68075618470074 1.23067921473904 1.10409506693731 -0.189876221702594 0.513369043862569 0.780602244777331 1.16035468818252 1.10409506693731 -0.161746411079988 0.175811316391291 -0.0351622632782582 -0.0210973579669549 0.0632920739008646 -0.766537339466028 -0.161746411079988 -0.443044517306053 -0.780602244777331 -0.935316203201667 -0.34459018012693 -0.161746411079988 0.639953191664298 -0.639953191664299 0.0210973579669547 0.119551695146078 0.0773569792121678 0.00703245265565144 -0.246135842947807 -0.414914706683447 -0.654018096975602 -0.42897961199475
MMP1107 0.220953428761871 -0.372132090546309 1.43406614461524 -0.214421161593955 -0.0631902152507954 0.212316161536396 -0.300013670549999 -0.453535985353314 0 0.0465165113182887 -0.139549533954866 0.453535985353314 0.43027772969417 0.174436917443582 0.453535985353314 0.43027772969417 -0.139549533954866 -0.0465165113182887 0.639602030626469 -0.290728195739304 0.407019474035026 0.290728195739304 -0.290728195739304 -1.51178661784438 -0.418648601864598 0 -0.139549533954866 -0.0465165113182887 0.290728195739304 0.976846737684061 -0.244211684421015 -0.290728195739304 -0.0116291278295722 -0.16280778961401 -0.220953428761871 -0.069774766977433 0.16280778961401 0.220953428761871 -0.0581456391478609
MMP1109 -0.188983320064639 -0.431961874433461 0.242943502462552 -0.587239002454325 -0.119524831569162 -0.181426183068249 -0.295476383836075 -0.206981731499367 -0.224980142934094 -0.0989912628910015 0.260976965803549 0.00899920571736377 -0.0449960285868189 0.503955520172371 0.0449960285868187 0.0809928514562738 0.170984908629911 0.251977760086185 0.458959491585552 0.125988880043093 0.107990468608365 0.0989912628910014 0.035996822869455 -0.242978554368822 -0.341969817259823 -0.377966640129278 -0.386965845846642 0.00899920571736377 0.170984908629911 0.611945988780736 -0.0449960285868189 0.21598093721673 0.0179984114347275 -0.00899920571736377 0.0899920571736376 -0.21598093721673 0.125988880043093 -0.0269976171520913 0.14398729147782
MMP1112 0.245553243729909 -0.149085897978873 1.52359527003669 0.786650319984615 0.490710752098271 0.193847202434807 0.627592697712562 0.0175395174092792 0.350790348185584 0.333250830776305 -0.201704450206711 -0.105237104455675 -0.263092761139188 -0.876975870463961 0.754199248599006 0.543725039687656 0.333250830776305 0.210474208911351 0.043848793523198 -0.105237104455675 0.00876975870463961 -0.149085897978873 -0.727889972485087 -0.236783485025269 -0.43848793523198 -0.420948417822701 -0.578804074506214 -0.841896835645402 -0.622652868029412 -0.43848793523198 -0.236783485025269 0.385869383004143 0.622652868029412 0.587573833210854 0.578804074506214 0.43848793523198 0.464797211345899 0.412178659118062 -0.149085897978873
MMP1344 0.762328664880353 -0.324710470409348 0.272937840105078 0.845400272331366 0.542037536853883 0.782648840900672 0.13992791055277 0.749539969171062 0.27635822792731 0.468188663566669 -0.439808731792963 0.391456489310926 0.26356953221802 -0.235189600444313 -0.00499307767708268 -0.247978296153604 -0.235189600444313 -0.145668730479279 0.0589504008693703 -0.567695688885869 -0.299133078990766 -0.120091339060698 -0.414231340374382 -0.209612209025732 0.00779561803220793 -0.17124612189786 -0.567695688885869 -0.235189600444313 -0.15845742618857 -0.120091339060698 -0.184034817607151 0.186837357962276 -0.145668730479279 0.0333730094507891 0.0973164879972421 0.0973164879972421 0.404245185020216 0.455399967857379 -0.0817252519328262
MMP1345 -0.247292929612645 0.114599162503421 0.393754603915821 -0.355573613007626 0.293347896282683 0.152633237285286 -0.141142632585533 0.114599162503421 0.295545208561454 0.572995812517105 -0.428238975670678 0.0542838138174098 0.44030204540788 -0.0301576743430055 0.802194137523947 0.778067998049542 0.186977580926634 -0.235229859875443 0.102536092766219 -0.428238975670678 -0.247292929612645 -0.247292929612645 -0.729815719100734 -0.560932742779903 -0.440302045407881 -0.838383346735553 -1.27265385727483 -1.28471692701204 -0.404112836196274 -0.355860557247465 -0.585058882254307 0.247292929612645 0.717752649363531 0.76600492831234 0.572995812517105 0.223166790138241 0.355860557247465 0.235229859875443 -0.367923626984667
MMP1470 -0.305274020077824 -0.21646703241882 2.2682158860322 0.108310756086927 0.907644413086247 1.01892288778414 1.26938299270239 0.0499539305581893 -0.316374893535199 0.19426528550407 0.0610548040155647 0.249769652790947 -0.260870526248322 -1.38205874544324 -0.172063538589319 0.172063538589319 0.416282754651578 -0.038853057100814 0.260870526248322 -0.60499760342696 -0.160962665131943 -0.360778387364701 -0.0721556774729401 -1.40426049235799 -1.09343603555148 -1.19334389666786 -0.849216819489219 -0.427383628108953 0.0388530571008139 -0.00555043672868771 -0.560594109597458 0.926922933690846 0.693804591085963 0.105458297845066 0.19426528550407 -0.0832565509303155 0.371879260822076 0.249769652790947 -0.48288799539583
MMP1491 -1.61284056435652 -0.379054694848767 1.10981171330692 -0.0489319847469025 0.242487918035694 0.372927684491012 0.430316713940015 0.334460024866559 -0.126351564949589 -0.141216454943658 0.0520271149792426 -0.156081344937728 0.706082274718292 0.260135574896213 0.654055159739049 0.104054229958485 0.304730244878421 0.185811124925866 0.349324914860629 0.0148648899940693 0.245270684902144 0.170946234931797 -0.401352029839871 -0.810136504676777 -0.869596064653055 -0.86216361965602 -0.564865819774634 -0.304730244878421 -0.341892469863594 -0.133784009946624 -0.0891893399644159 0.11148667495552 -0.0148648899940693 0.0594595599762772 0.0594595599762772 0.156081344937728 0.267568019893248 0.356757359857663 -0.141216454943658
MMP1521 0.325206032404174 -0.122611985556478 0.299476104403223 0.49217740341615 0.666222427872329 0.644075619781087 0.459920095978905 0.0773067724616703 0.101297023423848 0.0773067724616703 -0.106618484915026 -0.57043000351713 -0.0826282339528482 0.453154037535789 -0.0746314836321223 -0.27455024165027 -0.0506412326699445 -0.122611985556478 0.0933002731031221 0.261232029838367 -0.0346477320284927 -0.0426444823492186 -0.002660730745589 -0.874306515704715 -0.554436502875678 -0.306537242933174 -0.338524244216078 -0.0426444823492186 -0.0346477320284927 0.221248278234737 0.0533165214994925 0.133284024706752 -0.0186542313870408 -0.0746314836321223 -0.0986217345943001 -0.13860548619793 0.0693100221409443 0.253235279517641 0.0133327698958629
MMP1659 -0.0668650405272514 -0.395111603115576 1.25611628118502 -0.140061543899308 0.407613457001197 0.482454439179981 0.194618566214787 0.334325202636256 0.261381522061073 0.820616406470811 0.261381522061073 0.297853362348665 0.431583443403168 -0.115494160910707 -0.844930966662539 -0.480212563786623 -0.34648248273212 -0.297853362348665 -0.176280561390026 -0.273538802156937 -0.310010642444529 -0.0303932002396597 -1.19749208944259 -1.18533480934673 -0.662571765224581 -0.869245526854267 -0.978661047717042 -0.358639762827984 -0.261381522061073 -0.626099924936989 0.12765144100657 0.334325202636256 0.50452712397835 0.577470804553534 0.322167922540393 -0.139808721102435 0.0303932002396597 0.0911796007189788 0.249224241965209
MMP1722 -0.00863653169924269 -0.276369014375766 0.330129515530046 -0.0615386566044669 0.215085930017343 0.28879181884502 0.439063445788071 0.310915141172737 -0.526828433653804 0.190003697383339 0.215913292481067 0.371370863067435 -0.12954797548864 -0.621830282345473 0.146821038887126 -0.855016638225026 -0.172730633984854 -0.12954797548864 0.431826584962134 0.00863653169924269 0.518191901954561 0.829107043127298 -1.20047790619473 -1.13138565260079 -0.889562765021997 -0.751378257834114 -0.405916989864406 -0.0259095950977281 -0.241822887578795 -0.0777287852931842 0.181367165684096 0.345461267969707 0.0690922535939414 -0.164094102285611 -0.267732482676523 -0.164094102285611 0.112274912090155 0.371370863067435 0.293642077774251
Unanno_61 -0.771417573935672 -0.194268973387223 1.50734202913948 0.603501575326373 0.580620255002714 0.267776426043137 -0.349621718198389 -0.420601757916026 -0.473412740972747 -0.273485447972304 -0.61675683784099 -0.526223724029468 0.541312576331389 0.258396595670385 0.179180121085303 0.0848747941983017 0.209357825689144 -0.0660137288209009 0.167863481858863 -0.175407908009823 -0.0509248765189807 -0.0509248765189807 0.382879627161226 -0.548857002482349 -0.62430126399195 -0.782734213162112 -0.733695443180871 -0.303663152576145 -0.186724547236263 0.231991104142024 0.118824711877622 0.194268973387224 0.499818232501108 0.364018561783826 0.488501593274668 0.537540363255909 0.529995937104949 0.545084789406869 0.111280285726662
[+] Show/hide bicluster #111 motif PSSM #1. bicluster 111 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0.777778 0.055556 0.111111 0.055556
2 0 0.055556 0.277778 0.666667
3 0 0 0.888889 0.111111
4 0 0 1 0
5 0.055556 0 0 0.944444
6 0.055556 0 0.944444 0 [+] Show/hide bicluster #111 motif PSSM #2. bicluster 111 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0.333333 0.666667 0
2 0 1 0 0
3 1 0 0 0
4 0 0 0 1
5 0 1 0 0
6 1 0 0 0
7 1 0 0 0
8 0 0 0 1
9 0 1 0 0
10 1 0 0 0
11 1 0 0 0
12 1 0 0 0
13 1 0 0 0
14 0 0 0 1
15 0 0.666667 0.333333 0
16 0 0 0 1
17 0.666667 0 0 0.333333
18 0 0.333333 0.666667 0
19 0.333333 0.666667 0 0
20 0 0 0.666667 0.333333
21 1 0 0 0 |