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[+] Show/hide bicluster #110 rows and columns.
bicluster 110
Methanococcus maripaludis S2
17x39
[+] Show/hide bicluster #110 rows (genes).
bicluster 110 genes
Methanococcus maripaludis S2
17
[+] Show/hide bicluster #110 rows (short gene names).
bicluster 110 short names
Methanococcus maripaludis S2
17
short_name
[+] Show/hide bicluster #110 rows (long gene names).
bicluster 110 long names
Methanococcus maripaludis S2
17
long_name
[+] Show/hide bicluster #110 rows (NCBI RefSeq gene IDs).
bicluster 110 NCBI RefSeq IDs
Methanococcus maripaludis S2
34
[+] Show/hide bicluster #110 gene upstream sequences.
bicluster 110 upstream sequences
Methanococcus maripaludis S2
17
upstream
[+] Show/hide bicluster #110 columns (arrays; conditions).
bicluster 110 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #110 ratios.
bicluster 110 ratios
Methanococcus maripaludis S2
17x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0180m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m
MMP0090 0.0463417332839966 -0.445270043519561 -0.747458428895423 2.13247588083296 2.53830487777099 -0.106227438827452 -0.377461522581139 0.131102384457024 -0.0723231783582413 -0.513078564457982 -0.750408387742458 -0.682599866804037 0.876996114779662 -0.0384189178890305 0.283671556568473 0.0971981239878128 -0.360509392346534 0.571857770556765 0.910900375248873 1.02956528689111 0.9956610264219 1.01261315665651 1.38556002181783 0.690522682199003 2.14840588237507 -0.0553710481236359 -0.343557262111928 0.402336468210711 1.63984197533691 2.31792718472112 1.9449803195598 0.0463417332839966 -0.530030694692588 -0.919929690088513 -1.24202016454602 -0.81821690868088 -0.902977559853907 -1.24202016454602 -1.12335525290378
MMP0114 -0.145676239576903 -0.350702058240691 -0.277924582931234 1.12764263930996 1.76430112376471 -0.285957062873179 -0.372283723363196 -0.339911225679439 -0.285957062873179 -0.512564546659472 -0.426237886169456 -0.480192048975716 0.329120393118187 0.3938653884857 -0.275166230311927 0.0377679139643822 -1.36504031899838 0.361492890801943 0.318329560556935 1.13843283521209 0.544937044343228 0.620472872271993 1.26792282594712 0.102512909331894 1.6995561283972 0.383074555924448 0.221212067505667 0.588100374588236 1.24634116082461 1.61322946790718 1.21396866314085 0.00539541628062603 -0.480192048975716 -0.868662021180789 -0.847080356058285 -0.329120393118187 -0.415447053608204 -0.857871188619537 -1.01973367703832
MMP0436 0.265675478883803 -0.0683165517129778 -0.855046515049133 1.72544555067997 1.7534581606331 -0.144223831394064 -0.235312567011368 -0.220131111075151 -0.220131111075151 -0.523760229799497 -0.857752260396277 -0.432671494182193 0.67557478916167 -1.38910321816388 -0.614848965416801 -0.614848965416801 -0.690756245097887 0.569304597608149 -0.11386091952163 0.250494022947585 0.326401302628672 0.417490038245976 -0.0075907279681086 0.84257080446006 2.64916406086992 0.660393333225452 0.493397317927062 0.903296628204929 2.23926475059205 2.70988988461479 1.85972835218662 0.235312567011368 -0.326401302628672 -0.903296628204929 -0.67557478916167 -0.387127126373541 -0.356764214501107 -0.918478084141147 -0.933659540077364
MMP0515 -0.233168628015612 -0.150873818127749 -0.42313634869616 1.60764722973338 2.12594925543646 -0.219452826367635 -0.63092687580695 -0.397758247791338 -0.356610842847406 -0.205737024719658 -0.438905652735269 -0.329179239551452 0.877811305470539 -1.20699054502199 -1.13841153678211 -0.836663900526607 -0.781800693934699 0.0548632065919087 0.233168628015612 1.39901176809367 0.589779470863018 0.589779470863018 1.31671695820581 0.946390313710425 2.55113910652375 0.781800693934699 0.425189851087292 0.864095503822562 1.81048581753299 2.38654948674803 1.48130657798153 0.246884429663589 -0.425189851087292 -1.06983252854222 -1.11097993348615 -0.425189851087292 -0.411474049439315 -0.932674512062448 -1.19327474337401
MMP0551 -0.325845634136173 -0.612589792176005 -0.235651679911708 3.39286806949148 1.83776937652801 -0.260676507308938 -0.508319189252429 -0.508319189252429 -0.37798093559796 -0.782029521926814 -0.860232474119496 -0.703826569734133 0.612589792176005 -0.795063347292261 -0.37798093559796 -0.54742066534877 -0.534386839983323 0.742928045830474 0.0260676507308938 1.34248401264103 0.430116237059748 0.260676507308938 1.72046494823899 0.443150062425195 1.95507380481704 0.286744158039832 0.195507380481704 0.71686039509958 1.75956642433533 2.02024293164427 0.873266299484943 0.0260676507308938 -0.404048586328854 -0.612589792176005 -0.586522141445111 -0.234608856578044 0 -0.456183887790642 -0.742928045830474
MMP0560 -0.159047454047451 -0.361471486471478 -0.0477747899176489 2.0364439775539 2.57367698367693 -0.390389205389197 0.375930345930338 -0.477142362142352 -0.130129735129732 -0.766319551319534 -0.780778410778393 -0.766319551319534 0.592813237813225 -0.621730956730943 -0.694025254025239 -0.260259470259465 -1.35913278913276 0.0433765783765774 0.650648675648661 1.3446739296739 0.751860691860675 0.694025254025239 2.38571181071176 0.216882891882887 2.02424032424028 0.390389205389197 0.231341751341746 0.621730956730943 1.74952199452196 2.13991119991115 1.24346191346189 -0.0289177189177183 -0.636189816189802 -0.997661302661281 -1.17116761616759 -0.534977799977788 -0.607272097272084 -1.04103788103786 -1.25792077292075
MMP0741 -0.117054489597368 -0.338841943571327 -1.19647529937029 1.85077580255929 2.12546310058378 -0.0677683887142655 -0.462057195779083 -0.080089913935041 -0.314198893129776 -0.437414145337532 -0.535986347103736 -0.375806519233654 0.659201599311492 -0.733130750636145 -0.0308038130519389 -0.190983640922021 -0.52366482188296 0.757773801077696 0.314198893129776 1.81742497006439 0.634558548869941 0.437414145337532 1.75581734396051 0.659201599311492 2.31028597889541 0.609915498428389 0.437414145337532 0.794738376740023 1.82974649528517 2.38421513022007 1.9159971718306 0.0554468634934899 -0.338841943571327 -0.548307872324512 -0.646880074090716 -0.203305166142796 -0.301877367909001 -0.708487700194594 -0.954918204610105
MMP0751 -0.384690751725181 -0.795911900121065 0.631822550785027 1.9483880468373 1.7908017752724 -0.583668726755448 -0.0132651983353511 -0.49081233840799 -0.278569165042373 -0.689790313438256 -0.915298685139225 -0.451016743401937 0.769381503450363 -1.03468547015738 -0.716320710108958 -0.795911900121065 -0.0928563883474576 0.0132651983353511 -0.159182380024213 1.02142027182203 0.504077536743341 0.437751545066586 1.8438625686138 0.636729520096852 2.34794010535714 0.570403528420097 0.291834363377724 0.649994718432203 1.7908017752724 2.32140970868644 2.45406169203995 -0.0132651983353511 -0.583668726755448 -1.18060265184625 -1.1938678501816 -0.596933925090799 -0.451016743401937 -1.07448106516344 -1.08774626349879
MMP0752 -0.464260120016787 -0.271762021473241 -0.95197480850125 2.41240058565827 1.72115946933053 -0.464260120016787 -0.203821516104931 -0.158527845859391 -0.158527845859391 -0.396319614648477 -0.566170878069252 -0.475583537578172 0.588817713192022 -0.249115186350471 0.0113234175613851 0.147204428298006 -0.011323417561385 0.260438603911856 0.498230372700942 0.917196822472188 0.747345559051413 0.520877207823712 1.05307783320881 -0.0452936702455402 1.5173379532256 0.747345559051413 0.769992394174183 0.871903152226648 1.63057212883945 1.82307022738299 1.30219301955928 0.0905873404910803 -0.532200625385097 -0.702051888805873 -0.679405053683103 -0.215144933666316 -0.384996197087091 -0.815286064419723 -1.03043099808604
MMP0781 -0.66031787621113 -0.941340271054411 -0.6505513800243 2.75467945836461 1.6503107036114 -0.270008994484352 -0.504194323520419 -0.129497797062712 -0.301233705022494 -0.566643744596704 -0.707154942018344 -0.394907836636921 0.994591782310409 -0.535419034058561 -0.441744902444135 -0.37929548136785 -0.504194323520419 0.448159347892919 0.354485216278493 1.88449603264746 0.479384058431062 0.463771703161991 1.82204661157118 0.619895255852702 2.89929912513709 0.666732321659915 -0.0202113101792142 0.557445834776417 1.77520954576397 2.49337788814124 1.75959719049489 0.744794098005271 -0.00459895491014319 -0.847666139439984 -0.644705520942059 -0.0358236654482854 -0.0670483759864276 -0.816441428901842 -0.925727915785339
MMP0804 -0.391085103074908 -0.0959265347164868 -1.44063266765354 2.18584468221393 1.67502487543404 -0.14020031997025 -0.302537532567381 -0.00737896420896053 -0.361569246239066 -0.494390602000355 -0.627211957761645 -0.243505818895697 0.951886382955907 -0.671485743015408 -0.922370526120065 -0.863338812448381 -0.774791241940855 0.110684463134408 0.641969886179565 1.89639380170285 0.966644311373829 0.671485743015408 1.97018344379246 0.435358888328671 2.39816336791217 0.538664387254118 0.213989962059855 0.671485743015408 1.52744559125483 2.38340543949425 1.21752909447849 0.14020031997025 -0.479632673582434 -0.922370526120065 -0.966644311373829 -0.346811317821145 0.00737896420896043 -0.730517456687092 -0.996160168209671
MMP0805 -0.110343152032004 -0.0514934709482686 -0.442936538402817 1.34810245328233 2.19950683050462 -0.110343152032004 -0.272179775012277 -0.198617673657608 -0.228042514199475 -0.36045429663788 -0.684127542598426 -0.478153658805351 0.478153658805351 -1.09607531018457 -0.419303977721616 -0.345741876366946 -0.419303977721616 0.860676585849633 0.36045429663788 0.742977223682161 0.816539325036831 0.639990281785624 1.47859823722886 0.43401639799255 2.61145459809077 0.463441238534418 0.507578499347219 0.845964165578699 1.81698390346034 2.31720619267209 1.81698390346034 0.183905253386674 -0.198617673657608 -0.816539325036831 -0.684127542598426 -0.213330093928541 -0.228042514199475 -0.96366352774617 -0.993088368288038
MMP0957 -0.145838946960715 -0.39584857032194 -0.603588441637425 2.8830584468019 2.15980535737059 -0.0208341352801021 -0.312512029201532 0.00694471176003404 -0.118060099920579 -0.256954335121259 -0.340290876241668 -0.46529568792228 0.743084158323642 -0.562521652562757 -0.715305311283506 -0.423627417362076 -0.562521652562757 0.368069723281804 0.39584857032194 0.798641852403914 1.04865147576514 0.743084158323642 2.53481979241242 0.46529568792228 1.85423803992909 0.0347235588001701 0.0763918293603744 0.645858193683165 1.46533418136718 1.90979573400936 1.2847716756063 -0.00694471176003404 -0.562521652562757 -0.923646664084527 -1.15976686392568 -0.618079346643029 -0.659747617203233 -0.868088970004255 -1.15976686392568
MMP1179 -0.254331135300125 0.635827838250313 -0.427366340526107 2.0610885983629 1.85096548468424 -0.0423885225500209 -0.438014733016882 -0.409755717983535 -0.353237687916841 0.113036060133389 -0.0989065526167154 -0.141295075166736 0.777122913417049 -1.4977277967674 -0.918417988583786 -0.81951143596707 -0.635827838250313 0.353237687916841 -0.0706475375833681 0.62169833073364 0.438014733016882 0.494532763083577 1.4977277967674 1.27165567650063 2.75525396575136 1.04558355623385 0.565180300666945 0.777122913417049 1.89335400723427 2.19007366508441 1.85096548468424 0.31084916536682 -0.226072120266778 -1.00319503368383 -0.81951143596707 -0.423885225500209 -0.31084916536682 -0.890158973550438 -0.989065526167154
MMP1309 0.0530849076351342 -0.49293128518339 0.500233068727253 2.76233737119822 2.54049200825285 -0.432262819314665 -0.417095702847484 -0.235090305241309 -0.0682520241023155 -0.659769566322383 -1.00861324506755 -0.674936682789564 0.659769566322383 -0.386761469913121 -0.219923188774128 -0.219923188774128 -0.477764168716208 0.174421839372584 0.62943533338802 0.856942080395739 0.781106498059833 0.811440730994195 1.29678845794399 0.462597052249027 1.96414158249997 0.00758355823359062 -0.159254722905403 0.295758771110034 1.63046502022198 2.13097986363896 1.3726240402799 0.037917791167953 -0.401928586380302 -0.932777662731645 -1.19061864267373 -0.62943533338802 -0.644602449855202 -0.902443429797282 -1.16028440973936
MMP1572 -0.4347380527875 -0.662139495784038 -0.0909069773408455 2.01890576645604 1.95966537641135 -0.153830387909423 -0.207336609790961 -0.274219387142884 -0.167206943379808 -0.6086332739025 -0.541750496550577 -0.514997385609807 0.862787827839807 -0.341102164494808 -0.769151939547115 -0.207336609790961 -0.2608428316725 -0.514997385609807 0.541750496550577 0.00668827773519231 0.688892606724807 0.916294049721346 1.91953571000019 0.635386384843269 2.37433859599327 0.581880162961731 0.180583498850192 0.555127052020961 1.78577015529635 2.26732615223019 1.94628882094096 0.127077276968654 -0.421361497317115 -1.25070793648096 -1.10356582630673 -0.581880162961731 -0.514997385609807 -0.983176827073269 -1.11694238177711
MMP1631 -0.182514218780114 -0.533503101049564 -0.347051769779257 3.68613234430176 1.61454885843947 0.336949326978672 -0.238672439943226 0 -0.042118665872334 -0.379067992851006 -0.547542656340342 -0.379067992851006 0.870452428028236 -1.29163908675158 -0.294830661106338 -0.322909771687894 -0.477344879886452 0.926610649191348 0.14039555290778 0.42118665872334 0.336949326978672 0.547542656340342 0.828333762155902 0.449265769304896 2.26036840181526 0.07019777645389 0.182514218780114 0.800254651574346 1.2775995314608 2.03573551716281 1.36183686320547 0.084237331744668 -0.112316442326224 -0.393107548141784 -0.505423990468008 -0.365028437560228 -0.35098888226945 -0.84237331744668 -1.02488753622679
[+] Show/hide bicluster #110 motif PSSM #1. bicluster 110 motif PSSM #1 Methanococcus maripaludis S2 24x4
POSITION A C G T
1 0 0 0 1
2 0 0 0.222222 0.777778
3 0 0 0 1
4 0.222222 0 0.444444 0.333333
5 0.333333 0 0.666667 0
6 0.333333 0.222222 0 0.444444
7 0.444444 0 0.111111 0.444444
8 0.333333 0 0.666667 0
9 0.111111 0.111111 0.555556 0.222222
10 0.222222 0 0 0.777778
11 0.888889 0.111111 0 0
12 0.111111 0.555556 0 0.333333
13 0.222222 0.222222 0 0.555556
14 0.333333 0 0.111111 0.555556
15 0 0 0 1
16 0.888889 0 0.111111 0
17 1 0 0 0
18 0 0.111111 0.111111 0.777778
19 0.111111 0 0.111111 0.777778
20 0.222222 0.222222 0.111111 0.444444
21 0 0.555556 0 0.444444
22 0.555556 0 0 0.444444
23 0 0.444444 0.555556 0
24 0.111111 0 0.444444 0.444444 [+] Show/hide bicluster #110 motif PSSM #2. bicluster 110 motif PSSM #2 Methanococcus maripaludis S2 9x4
POSITION A C G T
1 0 1 0 0
2 0 0.5 0.5 0
3 0 1 0 0
4 0 1 0 0
5 0 0.5 0 0.5
6 0 1 0 0
7 0 0.5 0.5 0
8 0 1 0 0
9 0 0 1 0 |