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[+] Show/hide bicluster #109 rows and columns.
bicluster 109
Methanococcus maripaludis S2
14x39
[+] Show/hide bicluster #109 rows (genes).
bicluster 109 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #109 rows (short gene names).
bicluster 109 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #109 rows (long gene names).
bicluster 109 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #109 rows (NCBI RefSeq gene IDs).
bicluster 109 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #109 gene upstream sequences.
bicluster 109 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #109 columns (arrays; conditions).
bicluster 109 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #109 ratios.
bicluster 109 ratios
Methanococcus maripaludis S2
14x39
GENES ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0492m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0090m ts_HighH2_to_LowH2_0180m ts_HighH2_to_LowH2_0300m ts_HighH2_to_LowH2_minus30m ts_LowH2_to_HighH2_0000m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_minus30m
MMP0033 0.139262901515779 0.98625785555281 0.746252626850011 0.614292627578796 0.630680440155721 0.36961877468611 0.0186147023337444 -5.71473766463057 0.0443109232095662 0.208894352273669 0.329166858128206 0.683654243804735 0.341827121902368 -0.177243692838265 -0.0126602637741618 -0.310176462466963 -0.0253205275483235 0.493750287192309 1.09511281646499 0.816587013433434 0.455769495869824 0.784936353998029 0.443109232095662 0.71530490324014 -0.57604200172436 -0.303846330579882 -0.841907540981757 -1.01282110193294 -1.07612242080375 -1.10777308023915 -0.898878727965485 -0.803926749659272 -0.367147649450691 -0.373477781337772 0.14559303340286 0.810256881546353 0.689984375691816 0.253205275483235 -0.310176462466963
MMP0092 0.0424238700993308 1.02449610467986 0.0219033359213265 0.223696714448629 0.433639288579849 0.483421979304223 0.15866454121659 -5.33736086458585 -0.456111976560763 0.246126689164746 0.26220849066991 0.626729324786968 0.358699299700896 -0.300654562010842 -0.375702969034942 -0.504357381076256 0.117472277123431 1.05557736492468 1.29144378700043 0.937644153886812 0.321175096188846 0.289011493178517 -0.18272135097297 -0.247048556993627 -1.05649923275357 -0.14519714746092 -0.279212160003956 -0.37034236853322 -0.670535996629621 -1.10474463726906 -0.783108607165772 -0.750945004155443 -0.0219033359213265 -0.354260567028056 0.208602485652696 1.09846216893846 0.889398749371319 0.321175096188846 -0.166639549467806
MMP0246 0.23070912426813 0.646190845513671 0.289973604410611 0.406397671124113 0.533176160486202 0.726185043837006 0.575919702860028 -4.79638184085686 -0.260072103720437 0.171983165363515 0.608233145797797 0.532728341491863 0.281045660472085 -0.205540856166152 -0.545312475542852 -0.394302866930985 -0.0125841340509889 1.42620185911207 1.27099753914988 0.826358136014937 0.415276423682633 0.0545312475542852 -0.327187485325711 -0.302019217223733 -0.633401413899774 -0.889278806269882 -0.952199476524826 -0.830552847365267 -0.889278806269882 -1.23743984834724 -1.05706726028307 -1.08223552838504 -0.373329310179337 -0.184567299414504 0.104867783758241 1.0193148581301 0.755048043059334 0.264266815070767 -0.138425474560878
MMP0247 0.281018216436286 0.742784915485219 0.328211500941849 0.413623193112708 0.743543350704417 0.795642151213906 0.756203419036651 -4.79783180408061 -0.424434409652045 0.370168823029866 0.691886229432786 0.618240076159828 0.308151009747375 -0.265513763115663 -0.416682182991734 -0.36629270969971 0.125973683230059 1.36245383554972 1.38183440220049 1.03298420248648 0.447691089632979 0.207372063163328 -0.149230363210993 -0.125973683230059 -0.707390682753409 -0.905072462591347 -0.951585822553215 -0.676381776112163 -0.858559102629479 -1.33144492890847 -1.19190484902287 -1.18802873569271 -0.292646556426753 -0.0368230766364788 0.215124289823639 1.08337367577851 0.792665176016833 0.246133196464885 -0.114345343239592
MMP0248 0.485711067538631 0.829127371663705 0.499421285750097 0.722034280576055 0.777338740535717 0.904522250309633 0.810376317930909 -4.98219356636291 -0.441218450664863 0.292909727752304 0.59694260972305 0.500541939829886 0.292909727752304 -0.255832547024164 -0.385602679572653 -0.411556706082351 0.133477850621303 1.36814796886836 1.23467011824705 0.919514082057865 0.352233216917328 0.144601004839745 -0.255832547024164 -0.218755366296024 -0.667389253106515 -0.819405694091888 -0.889852337475354 -0.656266098888073 -0.86760602903847 -1.49421038334403 -1.1679311929364 -1.20130065559173 -0.322571472334816 -0.140893286766931 0.170555031349443 1.03074562424228 0.737835896489981 0.241001674732908 -0.0444926168737677
MMP0566 -0.0105965036769134 0.737617502838669 -0.110328480947969 0.188163180739572 0.212804889092324 0.499813034973164 0.302200872431111 -5.50702260680973 -0.545719939361042 -0.148351051476788 0.270210843761293 0.466246161784191 0.206631821699812 -0.100666784930678 -0.349684621338144 -0.233123080892096 0.0105965036769134 0.524526932007215 0.964281834599123 0.704667494514744 0.222526577215182 0.185438814345985 -0.132456295961418 -0.137754547799875 -0.407965391561167 -1.53649303315245 -1.48880876660634 -1.51000177396016 -1.44642275189868 -1.54708953682936 -1.27687869306807 -1.16031715262202 -0.233123080892096 -0.196035318022899 0.344386369499687 0.704667494514744 0.376175880530427 0.190737066184442 -0.158947555153702
MMP0568 -0.0967239298437621 0.407684462571045 0.19682244527521 0.215513558445571 0.217955613024999 0.431165756604002 0.605490883504681 -5.82547191058201 -0.358814578452666 0.140405704611913 0.315132803684516 0.502340409833733 0.302652296607901 -0.0842434227671476 -0.271451028916365 -0.102964183382069 0.152886211688527 0.695788269521257 0.976599678745083 0.633385734138185 0.196567986456678 0.115444690458684 -0.00936038030746087 -0.152886211688527 -0.121684943996991 -1.29485260919875 -1.8564754276464 -1.81279365287825 -1.61310553965242 -1.5070212295012 -1.18876829904753 -1.03276196058985 0.152886211688527 -0.265210775378058 0.121684943996991 0.202808239994985 -0.159126465226835 -0.514820916910347 -0.202808239994985
MMP0603 -0.00233154343495048 0.760301592772102 -0.0288748644406249 0.213689513748493 0.437654475157067 0.401789200505208 0.134940314579457 -4.53659967795899 -0.925622743675339 0.827697919407419 0.459314056685244 0.771740876968608 0.375378493027027 -0.14688723640188 -0.496618751644451 -0.762414703228806 0.0862671070931677 0.34273688493772 1.2333864770888 0.920959656805438 0.240148973799899 0.142224149531979 -0.10025636770287 -0.0582885858737617 -0.916296569935537 -0.962927438634547 -1.66705355598959 -1.7043582509488 -1.7043582509488 -1.52249786302266 -1.2147341296092 -1.12147239221118 -0.314758363718314 0.0442993252640591 0.63651135774148 1.28001734578781 0.851013353756924 0.14688723640188 0.137561062662078
MMP0604 0.108926385820312 0.982639581069039 -0.0365729904659721 0.19423738773076 0.339713506905301 0.286769475760546 0.163446677410567 -4.3099240111701 -0.443675766633954 0.794365594153007 0.43304880216368 0.746544254036773 0.411794873223131 -0.18862861934737 -0.401167908752857 -0.587139786982658 0.0239106700581173 1.00159140132336 1.38416212225323 0.874067827680065 0.257703888404153 0.156747725936547 -0.0239106700581173 -0.0611050457040775 -0.597766751452932 -0.502124071220463 -1.15568238614233 -1.32040033543159 -1.46386435578029 -1.67109016295064 -1.32571381766672 -1.01221836579363 -0.363973533106896 -0.0504780812338032 0.804992558623281 1.57013400048303 1.16630935061261 0.496810588985325 -0.0770454924094891
MMP0694 0.203221170986045 0.810855459340039 0.380546417335273 0.044018541234872 -0.00167799488233095 0.15283825859872 -0.116629307462462 -4.24764774692756 -0.70157904513914 0.0574239797620817 0.284696071964142 0.357594667576124 0.164627796838525 -0.349950525128404 -1.32336118418251 -0.817359167581699 0.00167799488233101 0.923630821739747 1.21093705150462 1.02654648613313 0.464798484652568 0.404764347089759 0.0917292012265438 -0.221305944636672 -0.778765793434179 -1.21615736710607 -1.3448019475978 -1.29763226808417 -1.06178387051599 -1.25903889393665 -1.10037724466351 -1.06178387051599 -0.6243922968441 -0.39712020464204 0.198933018302987 0.923630821739747 0.623460133925705 0.15605149147241 -0.341374219762289
MMP0707 -0.00461756147482637 1.00102419644187 0.487132141270004 0.560664434330015 0.59624906231765 0.342847594976391 -0.106130319226221 -4.36085634542257 -0.217025389316839 0.401727848309894 0.346317110611977 0.651076167950517 0.383257602410588 0.133909282769965 -0.0969687909713537 -0.115439036870659 0.595665430252601 0.928129856440099 0.771132766296003 0.429433217158852 0.0230878073741317 -0.115439036870659 -0.0138526844244791 -0.161614651618923 -0.521784446655379 -0.789603012195308 -1.57458846291579 -1.74082067600954 -1.5930587088151 -1.55611821701649 -0.992775717087669 -0.531019569605032 -0.106203913921006 -0.383257602410588 0.00461756147482624 1.14053768428211 1.03895133183593 0.521784446655379 -0.337081987662325
MMP1114 0.115008744640572 1.62381585489208 0.452325000774933 0.562679700922228 0.825908114444253 1.05473182733212 0.93388260798856 -5.47826632794314 -1.09258307408543 0.208453349661037 0.0718804654003575 -0.0575043723202859 -0.1006326515605 -0.258769675441287 -0.495975211262466 -0.510351304342538 0.0431282792402145 0.769120979783825 0.704428560923503 0.654112235143253 0.107820698100536 -0.136572884260679 -0.309086001221537 -0.194077256580965 -0.646924188603217 -0.920069957124575 -0.718804654003574 -0.495975211262466 -0.876941677884361 -1.14289939986568 -1.02070260868508 -1.25790814450626 -0.790685119403932 -0.345026233921716 0.0143760930800715 0.999138469064969 0.733180747083646 0.57504372320286 -0.33783818738168
MMP1115 0.00742045180744206 1.80866116842084 0.380271456345803 0.655584666021572 0.977695533816216 1.12467816619592 0.791398405363305 -5.35205112483768 -0.808829247011185 0.230034006030704 0 0.148409036148841 -0.0222613554223262 -0.274556716875356 -0.408124849409313 -0.549113433750713 0.28939762049024 0.378443042179545 0.920136024122816 0.704942921706996 0.133568132533957 0.0519431626520944 -0.207772650608378 -0.185511295186052 -0.46748846386885 -0.986920090389794 -1.2169540964205 -1.51377216871818 -1.53603352414051 -1.29857906630236 -0.526852078328386 -0.541692981943271 -0.823670150626069 -0.393283945794429 -0.0445227108446524 0.808829247011185 0.50459072290606 0.311658975912567 -0.393283945794429
MMP1361 -0.133159908665283 0.763273445733706 -0.0305456786904197 0.165960520208149 0.247689639401496 0.300022998570802 0.255483968231346 -4.16875600640773 -0.461621016706313 0.588862707208694 0.53263963466113 0.517844089253877 0.28703358090072 -0.0651003997919159 -0.28407447181927 -0.372847744262791 0.378765962425693 0.781204797502991 0.476416562113567 0.458661907624862 0.115405254176578 0.147955454072536 -0.109487036013677 -0.144996344991085 -0.547435180068384 -1.06232016024081 -0.887732724435217 -1.25762135961656 -1.4470043408294 -1.73995613989303 -1.72220148540432 -1.66597841285676 -0.289992689982171 -0.133159908665283 0.130200799583832 1.0268108512634 0.85814163362071 0.710186179548174 -0.106527926932226
[+] Show/hide bicluster #109 motif PSSM #1. bicluster 109 motif PSSM #1 Methanococcus maripaludis S2 6x4
POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0.8 0 0.2 0
4 0 0 1 0
5 0.2 0 0.8 0
6 0 0.8 0.2 0 [+] Show/hide bicluster #109 motif PSSM #2. bicluster 109 motif PSSM #2 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0 0 1 0
2 0 1 0 0
3 0 0 1 0
4 1 0 0 0
5 0 0 1 0
6 1 0 0 0
7 0.5 0 0 0.5
8 0 0 1 0 |