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[+] Show/hide bicluster #108 rows and columns.
bicluster 108
Methanococcus maripaludis S2
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bicluster 108 genes
Methanococcus maripaludis S2
22
[+] Show/hide bicluster #108 rows (short gene names).
bicluster 108 short names
Methanococcus maripaludis S2
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short_name
[+] Show/hide bicluster #108 rows (long gene names).
bicluster 108 long names
Methanococcus maripaludis S2
22
long_name
[+] Show/hide bicluster #108 rows (NCBI RefSeq gene IDs).
bicluster 108 NCBI RefSeq IDs
Methanococcus maripaludis S2
36
[+] Show/hide bicluster #108 gene upstream sequences.
bicluster 108 upstream sequences
Methanococcus maripaludis S2
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upstream
[+] Show/hide bicluster #108 columns (arrays; conditions).
bicluster 108 arrays
Methanococcus maripaludis S2
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[+] Show/hide bicluster #108 ratios.
bicluster 108 ratios
Methanococcus maripaludis S2
22x39
GENES ss_HighFormate_HighH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0005m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0045m ts_HighH2LowN_to_LowH2HighN_0060m ts_HighH2LowN_to_LowH2HighN_0090m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0030m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0060m ts_HighH2LowP_to_LowH2HighP_0090m ts_HighH2LowP_to_LowH2HighP_0180m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0045m ts_HighH2_to_LowH2_0120m ts_HighH2_to_LowH2_0300m ts_LowH2_to_HighH2_0005m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0060m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0180m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0029 -1.20658880931306 -2.37627432051111 -1.10771203219697 -1.50602353631657 -1.61023389899487 0.70830309333832 -0.242407232570796 0.166144282997961 0.351354303389131 0.710879637089638 0.988694667676393 1.23927293055856 1.35366735491782 1.25561499118131 0.988694667676393 -0.378591071093715 -1.15756262744481 -0.694537576466888 -0.182486343620712 0.498432848993884 0.618274626894053 0.836168768530724 0.236959879029879 0.629169333975887 0.574695798566719 0.220617818407129 0.236959879029879 1.26650969826315 2.16532303251442 0.296880767979964 -0.819826707907974 -1.52253531468624 -1.78400828465024 -1.66961386029099 -1.29919381950865 -1.14666792036298 -0.896089657480808 -0.96145789997181 0.716326990630555
MMP0042 -0.323057231245988 -0.328028535774455 0.0584072730935467 -0.343146474685806 -0.693776628871104 1.65914090517826 -0.681357069536994 0.0176213035225085 0.0176213035225085 0.30543592772348 0.422911284540203 0.646114462491977 0.775337354990372 0.769463587149536 0.622619391128632 -0.698978373059502 -1.07489951487302 -0.45815389158522 -0.0117475356816723 0.587376784083615 0.640240694651141 0.616745623287796 0.205581874429265 0.428785052381039 1.01028806862382 0.722473444422847 0.928055318852112 1.83261556634088 2.61970045701292 -0.651988230332813 -1.63878122759329 -1.75625658441001 -1.6564025311158 -1.62115992407078 -1.1865011038489 -0.910434015329604 -0.481648962948565 -0.511017802152745 0.370047373972678
MMP0194 -1.19600055476755 -1.87723313255794 -0.90891988294951 -1.35911715310204 -1.72575240272994 1.86301239871271 -0.0574498083076115 -0.0365589689230255 0.0992314870767833 0.652838730768312 0.840856285229585 0.929642352614076 1.10721448738306 1.2586730729213 1.13855074645994 0.0470043886153185 -0.725956668614363 -0.50660285507621 -0.334253430153376 0.172349424922834 0.631947891383726 1.00276029046013 -0.151458585538248 0.637170601229872 0.720733958768216 0.71551124892207 1.00276029046013 1.95329348245879 2.34499672091978 -0.0731179378460509 -0.992314870767834 -1.20122326461369 -1.22733681384443 -1.20122326461369 -1.32656830092121 -1.14899616615223 -1.03409654953701 -1.14377345630608 0.443930336922452
MMP0335 -0.193854380613813 -2.02376444869798 -0.361350732276716 -0.989861932998771 -1.06886208019924 2.27357381918798 -0.784064704449234 0.117059986406632 0.459592763632547 0.485941438803771 0.601875609557157 0.596605874522912 0.786316335755726 0.781046600721481 0.338388857844915 0.106520516338143 -0.620702918387644 -0.188584645579568 -0.304518816332954 -0.151696500339854 0.159217866680591 0.301500712605202 -0.00414391938099883 1.29221089904323 0.622954549694136 0.586066404454422 1.04980308746797 1.44503321503633 1.06034255753646 -1.15294615684637 -1.50601840414078 -1.67991966027086 -1.88016959157216 -2.01718270246253 -1.96975508715432 -1.9908340272913 -1.34265661807919 -0.873650200031396 -0.188584645579568
MMP0542 -0.421255494261775 -1.71077785661865 -0.439470850415778 -1.18401794789357 -1.34375794266139 2.25619671515303 -1.02659085165509 -0.0502435010207118 0.403758017024274 0.584382276891633 0.569737066632118 0.716189169227274 0.765006536758993 0.711307432474102 0.311005018714008 0.130380758846648 -0.308975548938822 -0.0941791317992589 -0.0160713437485086 0.350058912739383 0.599027487151149 0.774770010265337 -0.0502435010207118 0.945630796626353 1.09208289922151 1.04326553168979 1.10184637272785 1.13601853000006 0.950512533379525 -1.33414026710492 -1.5977540517762 -1.86136783644748 -1.90530346722603 -1.85648609969431 -1.7881417851499 -1.77349657489039 -1.42201152866201 -0.836203118281385 -0.0795339215397432
MMP0628 -0.798180009835015 -1.92252590156787 -0.970170130749643 -1.37018383295993 -1.33133779965765 2.40156528734227 -0.0778712204717088 0.180772476095038 0.300360421819448 0.59793972862205 0.711965444312766 0.73421436444754 0.700840984245379 0.659124258992678 0.467227322830253 0.0472789552863947 -0.634094223841057 -0.378231642291157 -0.36710718222377 0 0.258643696566747 0.50338181804926 0.116806830707563 0.570128578453582 0.539536313268268 0.464446207813406 0.940016875694199 1.90784490155687 1.74097800054606 -0.645218683908444 -1.42671200364238 -1.65754455004066 -1.69091793024282 -1.57132998451841 -1.52405102923201 -1.35162189818752 -1.12913269683978 -1.1124460067387 -0.0945579105727892
MMP0634 -0.90207905866998 -2.01899276655847 -0.782930531432126 -1.2210578881377 -2.10989674742984 1.31382178001262 -0.539047242375964 0.143012533691582 0.484042421725355 0.418036636944625 0.51704531411572 0.638055919547059 0.605053027156694 0.682059776067546 0.58305109889645 -0.132011569561461 -0.286025067383164 0 0.0110009641301217 0.264023139122921 0.704061704327789 1.28711280322424 -0.0220019282602434 0.319027959773529 0.561049170636207 0.209018318472312 0.330028923903651 1.13309930540254 1.58413883473753 -0.704061704327789 -1.18810412605314 -1.44112630104594 -1.61714172712789 -1.58413883473753 -1.5731378706074 -1.23210798257363 -0.96808484345071 -0.90207905866998 0.286025067383164
MMP0635 -0.598239660755365 -1.84386415141049 -0.55185230887275 -1.02811138966424 -1.97650687786589 1.75774431211881 -0.57442184490413 0.116294814781686 0.580742223880769 0.747466934839414 0.437835328773359 0.473562052550211 0.521197684252681 0.342564065368419 0.152021538558539 -0.169518975433134 -0.514877305276042 -0.121883343730664 -0.169518975433134 0.545015500103917 0.878464922021207 1.39054796282276 0.0329324593023633 -0.133792251656282 -0.229063515061222 -0.0623388041025767 0.938009461649294 0.830829290318737 1.2833677914922 -0.467241673573572 -0.90787126682142 -0.967415806449508 -1.08650488570568 -0.895962358895803 -0.800691095490863 -0.43151494979672 -0.502968397350425 -0.514877305276042 0.211566078186626
MMP0711 0.156446126166884 -1.98622477409535 -0.693173311732257 -1.11040537189222 -0.86536432270482 0.941463893628384 0.264002837906617 0.381337432531781 0.72356333352184 0.792008513719852 1.00712193719932 0.801786396605283 0.733341216407271 0.479116261386083 0.156446126166884 -0.0586672973125817 -0.635562387552968 -0.616006621782108 0.00977788288543029 0.782230630834422 1.27112477510594 1.24179112644965 0.488894144271514 1.28090265799137 -0.00977788288543029 -1.13423441470991 -0.205335540594036 1.64268432475229 2.81603027100392 -0.743119099292701 -1.43734878415825 -1.53512761301255 -1.27112477510594 -0.948454639886737 -1.21245747779335 -0.909343108345016 -1.45690454992911 -1.36890360396024 -0.33244801810463
MMP0964 -0.702671102640524 -1.30130699115206 -0.743929634146834 -1.03323336423382 -1.74992354989363 -0.00835857001455161 -0.113036739950949 0.0950695057041953 0.413009603232888 0.806099178359271 0.86968719786501 0.863906468819033 0.86968719786501 0.846564281681105 0.360983041819102 0.158657525209934 -0.563933605537095 -0.361608088927927 -0.0783523656750915 0.615335119842055 1.19340802443968 1.37839135391092 -0.442538295571594 0.106630963796148 0.216464815669696 0.343640854681173 0.465036164646674 1.46510228960056 2.12410540084185 -0.824066412606025 -1.61024556285879 -1.80679035042198 -1.85303618278979 -1.83569399565186 -1.60446483381282 -1.32120911055998 -0.951242451617502 -0.957023180663478 0.00835857001455178
MMP0988 -0.673008459862888 -1.86662765884743 -1.30044218421547 -1.67392973943231 -0.941028068164367 0.752734120886769 -0.816857596322131 -0.344210433670332 -0.0359622841148108 -0.11816179066295 0.0873369757073977 0.529159323403645 0.0462372224333281 -0.251735988803676 0.0462372224333281 0.231186112166641 -0.190086358892571 0.00513746915925869 0.0565121607518455 0.436684878536988 0.8579573495962 1.16620549915172 0.282560803759228 0.888782164551753 0.673008459862888 0.755207966411027 1.44362883375169 1.58747797021093 2.62524674038119 -1.0942809309221 -1.50527846366279 -1.44362883375169 -1.36142932720355 -1.08400599260358 -1.17648043747024 -1.19703031410727 -1.18675537578876 -1.1559305608332 -0.097611914025915
MMP1015 0.202916487898861 -0.587389535691593 -0.889182434241543 -1.19059354541951 -2.11639715526267 0.995066527755377 -0.0507291219747154 0.367786134316686 0.190234207405182 0.53265578073451 0.291692451354613 0.558020341721868 0.202916487898861 0.507291219747153 0.0887759634557515 -0.887759634557518 -0.963853317519591 -0.291692451354613 -0.494608939253474 0.266327890367255 0.355103853823007 0.050729121974715 0.367786134316686 1.58528506170985 0.672160866164978 0.050729121974715 0.976535598013269 2.00380031800125 1.9784357570139 -0.507291219747153 -0.558020341721869 -0.913124195544876 -0.710207707646015 -1.24286348838053 -0.672160866164978 -0.659478585671299 -0.456562097772438 -0.570702622215547 0.152187365924146
MMP1156 -0.735287712942861 -2.15915370968737 -0.657319613209128 -0.567913000544815 -0.61959848350886 2.21951055229069 -0.134738586141362 0.142437933920868 0.296424889510996 0.554353040124461 0.862326951304717 0.997065537446079 0.970117820217806 0.846928255745704 0.57745108346298 -0.388817062865073 -0.796882495178912 -0.719889017383848 -0.642895539588784 0.0307973911180256 0.37341836730606 0.735287712942861 0.0307973911180256 0.327222280629022 0.296424889510996 0.30027456340075 1.55526825146029 1.71695455482993 1.3820329264214 -0.920072059651015 -1.60531401202708 -1.75160161983771 -1.90173890153808 -1.76315064150697 -1.49752314311399 -1.3820329264214 -0.716039343494095 -0.238679781164698 -0.558202714014214
MMP1162 -0.1379859638284 -2.64720809740032 -0.357958912219563 -0.302283536667974 -0.257612057570423 0.0139875984203828 0.225134993614758 0.709296270205636 0.840019814885173 1.10630851701016 1.28544818934878 1.23703206168969 1.25639851275333 1.26608173828515 0.689929819142 -0.505948534037467 -0.898119168076078 -0.704454657439727 -0.554364661696555 0.0605201595738597 0.757712397864723 0.898119168076078 0.17671886595567 0.00242080638295439 -0.196085317019305 -0.530156597867011 1.02400109998971 1.02884271275561 1.16924948296697 -0.433324342548835 -1.14019980637152 -1.60499463189876 -1.75992624040784 -1.69698527445103 -1.48395431275104 -1.03368432552152 -0.384908214889748 0.0508369340420422 -0.273551121273846
MMP1385 -0.602611769360181 -2.47535691278894 -1.66082178345404 -1.68126749459161 -1.51781159023309 -0.660601187445726 -1.05297517944177 0.0355550060590729 0.294468383514884 0.445805075971451 0.47497841427633 0.597141768428016 0.682838449698602 0.730245124444032 0.660958445969942 -1.79142530528405 0.0756683462282831 0.232475039617014 0.237945040549179 0.443981742327395 0.422101738598735 0.447628409615505 0.30358505173516 0.237945040549179 0.181421697583474 0.281705048006499 0.31452505359949 0.0683750116520631 0.341875058260315 -0.103018350889108 -1.18790186910184 -1.72943196138618 -2.25455205087402 -2.41865207883897 -2.46970542087251 -2.46241208629629 -2.2107920434167 -1.70208195672535 0.0811383471604482
MMP1486 -0.341810574331662 -2.4373744018752 -0.829780855750296 -1.10563258152318 -1.48692301457926 0.122635942348052 0.395578529844507 0.64137489790323 0.825722173947272 1.14832990702435 1.48629991310509 1.49398104960693 1.63992264314179 1.5323867321161 1.14832990702435 -0.518476713873869 -0.979344903983974 -0.602969215394055 -0.195868980796795 0.380216256840837 0.62601262489956 1.02543172299498 -0.0806519332692684 0.672099443910571 0.457027621859188 0.856446719954613 0.503114440870199 1.52470559561427 1.77050196367299 -0.549201259881209 -1.48629991310509 -1.54006786861794 -1.47093764010142 -1.27122809105371 -1.32499604656655 -1.28659036405738 -1.20977899903903 -1.071518542006 0.00384056825091755
MMP1660 -0.70290198253011 -1.79838909778254 -0.444013137668198 -2.17857677411373 -2.3917071193867 1.37058103654484 0.0793599012533995 0.249416832510684 0.102034158754371 0.26075396126117 0.52150792252234 0.770924755033024 0.646216338777682 0.396799506266998 0.26075396126117 -0.102034158754371 -1.25842129130391 -0.44214802126894 -0.0793599012533995 0.0906970300038852 0.26075396126117 0.600867823775739 -0.249416832510684 1.05435297379517 0.362788120015541 0.034011386251457 0.498833665021368 1.84795198632916 2.40347129510296 -0.555519308773797 -1.26975842005439 -1.38312970755925 -1.24708416255342 -1.45115248006216 -1.24708416255342 -0.884296042537881 -0.600867823775739 -0.827610398785452 0.453485150019426
MMP1703 -0.282619812161929 -1.61957129039799 -0.520341199025996 -1.13411128237008 -0.569824778943356 1.0061839896346 -0.305690817236372 0.720968908576348 0.824788431411342 0.374903832459701 0.271084309624707 0.236477802013042 0.328761822310815 -0.00576775126861079 -0.0980517715663834 0.640220390815797 -0.0403742588802755 -0.467187852757473 -0.351832827385258 0.213406796938599 0.44411684768303 0.801717426336898 2.20904873587793 1.68995112170296 1.10164049230466 -0.363368329922479 0.155729284252491 0.720968908576348 1.33235054304909 -0.767110918725234 -1.04396297961855 -1.34388604558631 -1.35542154812353 -1.49384757857019 -1.7130221267774 -1.44770556842131 -1.48231207603297 -0.917072451709114 0.22494229947582
Unanno_18 -1.58704806709384 -1.46135932611552 -1.11681015637946 -1.88889132489938 -2.19451844670658 1.85515540188349 -0.397184553532537 -0.0152113233267778 0.0760566166338904 0.248451614337374 0.299156025426634 0.207888085465966 0.319437789862339 0.136901909941002 -0.143662498086237 0.971834545877485 0.272113672845696 0.255212202482609 0.356621024661129 0.44450867054918 0.373522495024216 0.76225631337521 -0.0997186751422114 0.268733378773078 0.19098661510288 -0.0152113233267778 0.360001318733747 1.26253983612258 1.47211806862485 -0.481691905347971 -1.17465219023452 -1.43493483382606 -1.74254159443424 -1.76958394701518 -1.79662629959612 -1.7932460055235 -1.72225982999853 -1.93183806250081 0.0152113233267782
Unanno_20 -1.87286420092605 -1.76217315686139 -0.964283402138929 -1.26531531880326 -1.64993273519891 0.857683841262751 -0.687289615018733 -0.041237376901124 0.336771911359179 0.687289615018733 0.841929778397947 1.00687928600244 1.15121010515638 1.09622693595488 0.989697045626975 -0.378009288260303 0.0171822403754683 0.0274915846007493 0.134021474928653 0.408937320936146 0.642615790042515 0.969078357176413 -0.0446738249762177 0.216496228730901 0.223369124881088 0.381445736335397 0.890040051449258 1.42268950308878 1.91410157782717 0.250860709481837 -0.718217647694576 -1.16151944938166 -1.69073245294608 -1.85911840862567 -1.75946141444796 -1.85224551247548 -1.58763901069327 -1.45705398383971 0.652925134267796
Unanno_25 -1.80321844507765 -1.67842624797301 -0.702812222409862 -1.23120868980773 -1.60961978582545 0.46430578862596 -0.786268222898722 -0.0877241405713449 0.276168590687568 0.688796955597228 0.864245236739917 0.925977039364197 1.04619160236937 1.09492723602012 0.838252898792853 -0.0389885069205978 -0.0454865914073641 0.0389885069205978 0.0389885069205978 0.207938703576522 0.493854420994239 0.714789293544293 -0.211187745819905 0.191693492359606 0.198191576846372 0.217685830306671 0.708291209057527 1.47181613625257 1.8519540787284 -0.172199238899307 -1.05918777134291 -1.4458237983055 -1.86495024770193 -1.96891959949019 -1.95917247276004 -2.02090427538432 -1.72524143123645 -1.57253644579744 0.344398477798614
Unanno_50 -1.32313968120349 -1.80159923879402 -1.13232897939529 -1.50263407237345 -1.66432213180822 1.50985109715335 0.0550216501094523 0.303929114890307 0.558076736824444 0.867246008868033 0.94322828759061 1.04279127350295 1.1816554380649 1.26287787394076 1.17641528091162 0.40611217937929 0.214846443284528 0.327509822080073 0.220086600437809 0.427072807992415 0.72052160857616 0.896066873211079 -0.749342472919206 -0.445413358028899 -0.455893672335461 -0.461133829488742 -0.267248014817339 0.159824793175076 0.780783415838894 -0.783403494415534 -1.27073810967068 -1.54584636021794 -1.83667508222505 -2.13536403996207 -2.14584435426864 -2.1825254543416 -1.90741720379434 -1.80523413930536 -0.471614143795305
[+] Show/hide bicluster #108 motif PSSM #1. bicluster 108 motif PSSM #1 Methanococcus maripaludis S2 7x4
POSITION A C G T
1 0.055556 0.444444 0.5 0
2 0 0 1 0
3 0 0 1 0
4 0 0 1 0
5 0.166667 0.111111 0.722222 0
6 0.833333 0 0 0.166667
7 0 0 0.388889 0.611111 [+] Show/hide bicluster #108 motif PSSM #2. bicluster 108 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 1 0 0 0
2 0.2 0 0 0.8
3 1 0 0 0
4 0.2 0 0 0.8
5 0 0.2 0 0.8
6 0.2 0 0.8 0
7 0 0.8 0.2 0
8 0 1 0 0
9 0 0.8 0.2 0
10 0 0.2 0.4 0.4
11 0.8 0 0 0.2
12 0 0 0.8 0.2
13 0.2 0 0.8 0
14 0.2 0 0.4 0.4
15 0.2 0 0.8 0
16 0 0 1 0
17 0.2 0 0.6 0.2
18 0.4 0 0.6 0
19 1 0 0 0
20 1 0 0 0
21 0 0 0.2 0.8 |