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[+] Show/hide bicluster #105 rows and columns.
bicluster 105
Methanococcus maripaludis S2
14x39
[+] Show/hide bicluster #105 rows (genes).
bicluster 105 genes
Methanococcus maripaludis S2
14
[+] Show/hide bicluster #105 rows (short gene names).
bicluster 105 short names
Methanococcus maripaludis S2
14
short_name
[+] Show/hide bicluster #105 rows (long gene names).
bicluster 105 long names
Methanococcus maripaludis S2
14
long_name
[+] Show/hide bicluster #105 rows (NCBI RefSeq gene IDs).
bicluster 105 NCBI RefSeq IDs
Methanococcus maripaludis S2
28
[+] Show/hide bicluster #105 gene upstream sequences.
bicluster 105 upstream sequences
Methanococcus maripaludis S2
14
upstream
[+] Show/hide bicluster #105 columns (arrays; conditions).
bicluster 105 arrays
Methanococcus maripaludis S2
39
[+] Show/hide bicluster #105 ratios.
bicluster 105 ratios
Methanococcus maripaludis S2
14x39
GENES ss_HighFormate_HighH2 ss_HighFormate_LowH2 ts_GrowthCurveInDefinedMedium_0070m ts_GrowthCurveInDefinedMedium_0334m ts_GrowthCurveInDefinedMedium_0649m ts_GrowthCurveInDefinedMedium_0783m ts_GrowthCurveInDefinedMedium_0849m ts_GrowthCurveInDefinedMedium_0912m ts_GrowthCurveInDefinedMedium_1444m ts_HighH2LowN_to_LowH2HighN_0000m ts_HighH2LowN_to_LowH2HighN_0010m ts_HighH2LowN_to_LowH2HighN_0020m ts_HighH2LowN_to_LowH2HighN_0030m ts_HighH2LowN_to_LowH2HighN_0120m ts_HighH2LowN_to_LowH2HighN_0180m ts_HighH2LowN_to_LowH2HighN_0300m ts_HighH2LowN_to_LowH2HighN_minus30m ts_HighH2LowP_to_LowH2HighP_0000m ts_HighH2LowP_to_LowH2HighP_0005m ts_HighH2LowP_to_LowH2HighP_0010m ts_HighH2LowP_to_LowH2HighP_0020m ts_HighH2LowP_to_LowH2HighP_0045m ts_HighH2LowP_to_LowH2HighP_0120m ts_HighH2LowP_to_LowH2HighP_0300m ts_HighH2LowP_to_LowH2HighP_minus30m ts_HighH2_to_LowH2_0000m ts_HighH2_to_LowH2_0005m ts_HighH2_to_LowH2_0010m ts_HighH2_to_LowH2_0020m ts_HighH2_to_LowH2_0030m ts_HighH2_to_LowH2_0060m ts_HighH2_to_LowH2_0120m ts_LowH2_to_HighH2_0020m ts_LowH2_to_HighH2_0030m ts_LowH2_to_HighH2_0045m ts_LowH2_to_HighH2_0090m ts_LowH2_to_HighH2_0120m ts_LowH2_to_HighH2_0300m ts_LowH2_to_HighH2_minus30m
MMP0159 0.00546072003650107 0.285777681910225 1.10691062066789 -0.371559550486817 0.660169562260775 0.68033400637252 0.663128475255433 -0.746355189195906 -2.26104464901287 -0.577016083856952 0.314901522104898 0.791804405292662 0.777242485195326 0.118315600790858 0.198406161326207 0.445958802980925 -0.507846963394604 -0.413194482761918 -0.708073364732979 0.649825684343633 1.14493096765307 1.14129048762873 -0.387711122591579 -0.303980082031896 -0.737197204927651 -0.274856241837223 -0.24573240164255 -1.22502152818842 -1.21410008811542 -1.3196740088211 -1.88030793256855 -1.98588185327424 1.69100297130318 1.98952233329857 1.82934121222787 1.01751416680138 0.413194482761918 0.613420884100292 -0.132877520888194
MMP0625 -0.0388083899623903 0.385801053155527 0.865398104011155 -0.301820035138192 0.442835588876186 0.448814272463004 0.492864128139407 -0.471559732849173 -1.88472863669876 -0.687136786981146 0.171213485128192 0.837804653893955 0.700833865791401 0.157516406317937 0.157516406317937 0.541034613005088 -0.709965251664905 -0.477114911890563 -0.276224422673484 0.64604555055038 1.50439582265972 1.36285934162041 -0.472549218953811 -0.449720754270052 -0.814976189210196 -0.550165998878592 -0.513640455384577 -1.18479731708709 -1.14827177359308 -1.15283746652983 -1.75550893418107 -2.07510743975369 1.65962938250928 2.09793590443745 1.84225709997935 0.924552819692239 0.116425169887171 0.477114911890563 -0.184910563938448
MMP0667 0.0437708230691004 0.412696331794375 0.907375218228471 -0.104284630018528 0.514014688169207 0.571331727447144 0.608037217454311 -1.80464304369766 -1.6344330885612 -0.719092093278078 0.234486552155895 0.372051996087353 0.325154685656174 0.015632436810393 -0.0218854115345502 0.0406443357070218 -0.622170985053641 -0.775368865795493 -0.140691931293537 0.737851017450549 1.09739706408959 0.709712631191842 -0.497111490570497 -0.509617440018812 -1.04424677893425 -0.409569844432296 -1.22870953329689 -1.23496250802105 -1.52885232005644 -1.82274213209182 -1.9571810886612 -2.17916169136878 1.35376902778003 1.55699070631514 1.52885232005644 0.91606079708903 0.431455255966847 0.565894212536226 -0.143818418655616
MMP0668 -0.0253094455426959 0.363823279676255 1.03246801033697 -0.12841460606083 0.561905557695865 0.685093684160112 0.663617904625297 -1.57781553082315 -1.29401141989535 -0.76877440835939 0.332186472747885 0.427096893532995 0.370150641061929 0.0822556980137619 0 0.12654722771348 -0.623245096488888 -0.765610727666553 -0.332186472747885 0.743464962816694 1.14525241080699 0.759283366280879 -0.490370507389734 -0.540989398475127 -1.009214141015 -0.423933212840158 -1.0345235865577 -1.33823693307005 -1.40151054692679 -1.64827764096808 -1.94249994540192 -2.13864814835781 1.37936478207693 1.727369658289 1.65776868304659 1.00288677962933 0.493534188082571 0.591608289560518 -0.170838757413198
MMP0669 -0.0603066485109282 0.403300711916833 0.902456052459292 -0.340646638420113 0.485251910339018 0.543571990003016 0.640923403260526 -1.01683050984856 -0.826609473685102 -0.814139754897531 0.252534090639512 0.459838194895828 0.369378222129436 0.0716141451067274 0.0263841587235311 0.0942291382983255 -0.640758140428613 -0.821678085961397 -0.557836498726086 0.75006394085467 1.23628629447403 0.870677237876527 -0.633219809364747 -0.693526457875675 -1.08551967319671 -0.508837346810957 -0.844293079152995 -1.52651204043287 -1.35689959149589 -1.56797286128413 -1.96750440766903 -1.94488941447744 1.60566451660346 1.97127357320097 1.89212109703037 1.17974881149503 0.557836498726086 0.704833954471474 -0.297764077022708
MMP1207 0.0557675885400524 0.23025253017148 0.931268449440752 -0.537416982415402 0.440157821000657 0.482834545931105 0.446016401221426 -1.07908311943832 -0.698729958494163 -0.494531073528295 0.0893223850076346 0.518823779792686 0.273873765579337 -0.1086509141511 -0.00798652474835369 0.206764172644172 -0.252936538961703 -0.460976277060713 -0.269713937195495 0.23025253017148 1.1362320347962 0.837594346234717 -0.0784515973302762 -0.266358457548736 -0.722703689507854 -0.387155724832032 -1.45084277285439 -1.45084277285439 -1.6823708684807 -1.79981265611724 -2.32662296065828 -2.39373255359345 1.48520191805905 1.56908890922801 1.25031834278598 0.619488169195433 0.183275815116865 0.143010059355766 0.13629910006225
MMP1289 -0.251995028282553 0.09422422796652 0.836012219697298 -0.485567151447159 0.443265346454913 0.353159159885275 0.385151475756093 -1.87970640928752 -2.13445757512349 -0.84801805169868 0.221317372665547 0.650804551303638 0.436060961984592 -0.0460164834255097 -0.0635465723495135 0.151197016969532 -0.699012295844648 0.0416339611945089 -0.0503990056565107 1.12849947448274 1.61934196435484 1.29941784149178 -0.028486394501506 0.0153388278085033 -0.453591050908596 -0.260760072744555 -0.725307429230654 -0.703394818075649 -1.13288199671374 -1.35639063049479 -2.04882914299293 -2.13647958761295 1.64125457550985 1.68946232005086 1.44404107511481 0.795427784926669 0.146814494738531 0.4711211398326 -0.203787283741543
MMP1321 -0.0104017717496224 0.530490359230743 1.19903594561856 -0.137144708066975 0.588364829077326 0.746570997774964 0.754085986614457 -0.922304469124754 -0.701003706628871 -1.13899400658365 0.0104017717496224 0.858146169343849 0.951762115090451 0.109218603371035 0.249642521990938 0.530490359230743 -0.572097446229233 -0.462878842858197 -1.56026576244336 0.280847837239805 1.67988613756402 1.58106930594261 -0.140423918619903 -0.119620375120658 -0.847744397594227 -0.265245179615372 -0.993369202088941 -1.13899400658365 -0.613704533227722 -0.442075299358953 -1.62787727881591 -1.74749765393657 1.86711802905722 2.38720661653834 2.08035434992448 1.18580197945696 0.353660239487162 0.759329337722436 -0.0728124022473569
MMP1400 0.262739817130104 0.651329798767904 0.959765567762014 -0.0305531125118296 0.693642346235538 0.687195307255523 0.627909114063589 -1.33784024267556 -0.427278768558033 -0.523271736637266 0.240660840900683 0.947188080242139 0.585092870079643 0.0154552833605943 0.125850164507697 0.240660840900683 -0.558598098604338 -0.320145155326597 -0.262739817130104 1.18564102351988 1.88775246761545 1.3181148808964 -0.35547151729367 -0.293650383851292 -0.677824570243209 -0.532103327129034 -1.0134250089304 -1.21213579499518 -1.19888840925753 -0.942772284996255 -1.96723678204137 -2.10412643466377 1.77735758646835 1.96723678204137 1.64929952433771 0.638082413030252 0.0684448263112035 0.426124241227815 -0.37755049352309
MMP1401 -0.0727922074675259 0.219026584927276 0.786176681526693 -0.013841496524681 0.52147134309187 0.59119927313234 0.618994361075331 -1.11740950947043 -0.77460339900209 -0.761302170774013 0.54276305774026 0.930334891389607 0.615717755838961 0.013841496524681 0.105034869148057 0.405972998805197 -0.391969011649341 -0.355491662599991 -0.460364041116873 0.953133234545451 1.78299292541817 1.1355199797922 -0.405648017542847 -0.305335307657134 -0.720265153093494 -0.569796088264924 -1.15343367305453 -1.29934306925193 -1.39965577913764 -1.28110439472725 -2.0197707129766 -2.19759778959218 1.75107524499999 1.96537967066492 1.54589015659739 0.62027742447013 0.0184011651558498 0.351256975231171 -0.255178952714277
MMP1402 0.201133236834879 0.510568985811615 1.10021035904406 -0.137163541901503 0.703219080267765 0.751074606873323 0.714164139880715 -1.78579223209549 -1.67855393524946 -0.707834275784285 0.382926739358712 0.738777850681959 0.460285676602896 -0.0386794686220921 0.19726528997267 0.259152439768017 -0.727174010095331 -0.468021570327314 -0.444813889154059 0.881891884583699 1.67095304447438 1.06755333396974 -0.309435748976737 -0.259152439768017 -0.742645797544168 -0.522172826398243 -1.05981744024532 -1.16425200552497 -1.17972379297381 -1.17198789924939 -1.70963251309647 -1.9726528997267 1.73284019426972 1.86048244072263 1.64774536330112 0.723306063233122 0.166321715074996 0.448681836016268 -0.247548599181389
MMP1403 -0.0232800541793787 0.395760921049437 0.818298187935129 -0.147461869426163 0.560754382356654 0.636849526851932 0.656355112127036 -1.49982963105473 -0.972886834667352 -0.624681453813328 0.314280731421612 0.807041878218461 0.64408149896281 0.0271600632092751 0.0737201715680324 0.279360650152544 -0.547081273215399 -0.372480866870059 -0.485001128737056 0.919562140085458 1.60632373837713 1.18728276314831 -0.29488068627213 -0.252200586943269 -0.667361553142189 -0.58976137254426 -1.10580257352049 -1.33472310628438 -1.17564273605862 -0.989402302623594 -1.8585243253204 -2.16892504771211 1.83136426211112 1.87016435241009 1.59080370225754 0.845841968517425 0.217280505674201 0.430681002318505 -0.318160740451508
MMP1404 -0.00579804283401062 0.222258308637074 0.772316065699366 -0.0637814359066859 0.531394784866466 0.555015659624293 0.535409168052726 -1.48836451835367 -1.08564606144642 -0.709293906693965 0.237719756194435 0.724755354251327 0.577871602456391 0.00579804283401062 0.0367209379487339 0.257046565641137 -0.608794497571115 -0.206796861079712 -0.767274335034071 0.778870420702093 1.59446177935292 1.12675299074273 -0.229989032415754 -0.199066137301031 -0.604929135681774 -0.616525221349795 -1.06877256240262 -1.54034671290215 -1.15767588585745 -0.798197230148795 -1.89982536861081 -2.30568836699155 1.66017293147171 1.83797957838137 1.55194279857017 0.817524039595497 0.210662222969052 0.369142060432009 -0.392334231768052
MMP1433 -0.0411202984538035 0.583160596253941 0.553243452087906 -0.291641567371666 0.426195613573695 0.416855515339017 0.418543484899501 -1.0575858751835 -1.0362611949385 -0.665401193161548 0.631757312608436 1.02426925239474 0.785023879572613 0.164481193815214 0.242983581772475 0.355129850282849 -0.246721790722821 -0.403726566637344 -0.340177014481465 0.908384774934023 1.39061372952863 0.986887162891284 -0.16821940276556 -0.0336438805531119 -0.69904507371466 -0.609328058906361 -1.08408059560027 -1.43921044588312 -1.70836149030802 -1.79807850511632 -2.02237104213706 -2.17563760910124 1.49528358013831 1.71583790820871 1.39061372952863 0.523349253048408 -0.0747641790069155 0.317747760779391 -0.441108656140801
[+] Show/hide bicluster #105 motif PSSM #1. bicluster 105 motif PSSM #1 Methanococcus maripaludis S2 8x4
POSITION A C G T
1 0.125 0 0 0.875
2 0.125 0.125 0 0.75
3 0 0 0 1
4 0.375 0 0.625 0
5 0 0 1 0
6 1 0 0 0
7 0 0 0.875 0.125
8 0 0.125 0.875 0 [+] Show/hide bicluster #105 motif PSSM #2. bicluster 105 motif PSSM #2 Methanococcus maripaludis S2 21x4
POSITION A C G T
1 0 0.4 0.6 0
2 0 0.2 0.8 0
3 0.4 0.4 0.2 0
4 0.2 0 0.8 0
5 0.4 0 0 0.6
6 1 0 0 0
7 0 0.4 0 0.6
8 0 0 1 0
9 0.4 0 0.4 0.2
10 0.2 0.2 0.4 0.2
11 0 0 0 1
12 0 0 0.4 0.6
13 0.2 0 0.8 0
14 0.8 0.2 0 0
15 1 0 0 0
16 1 0 0 0
17 0.6 0.4 0 0
18 0.4 0.2 0 0.4
19 0.2 0 0.6 0.2
20 0 0.2 0.6 0.2
21 0.8 0 0.2 0 |